Interaction network for c4_17684
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Show the eQTL profiles of traits with a LOD score above the threshold at the selected locus.
Trait (count=31) Type Name LOD score Position Description
AT4G37150 gene MES9 13.65 4:17492871 Encodes a protein shown to have carboxylesterase activity%2C methyl salicylate esterase activity%2C methyl jasmonate esterase activity%2C and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4%2C or MEGA9 in vitro.
AT4G39210 gene APL3 10.60 4:18259547 Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first%2C rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences%2C fruits and roots.
AT4G36670 gene PMT6 9.10 4:17287496 Major facilitator superfamily protein%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%2C sugar:hydrogen symporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: integral to membrane%2C membrane%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G18480.1)%3B Has 44203 Blast hits to 43606 proteins in 2595 species: Archae - 767%3B Bacteria - 24504%3B Metazoa - 5461%3B Fungi - 8681%3B Plants - 2771%3B Viruses - 2%3B Other Eukaryotes - 2017 (source: NCBI BLink).
AT4G34250 gene KCS16 8.03 4:16394600 Encodes KCS16%2C a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
AT4G35160 gene 7.37 4:16730703 O-methyltransferase family protein%3B FUNCTIONS IN: methyltransferase activity%2C O-methyltransferase activity%2C protein dimerization activity%3B LOCATED IN: cytosol%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C Plant methyltransferase dimerisation (InterPro:IPR012967)%2C O-methyltransferase%2C family 2 (InterPro:IPR001077)%2C O-methyltransferase%2C COMT%2C eukaryota (InterPro:IPR016461)%3B BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT4G35150.1)%3B Has 3345 Blast hits to 3334 proteins in 568 species: Archae - 3%3B Bacteria - 935%3B Metazoa - 112%3B Fungi - 688%3B Plants - 1514%3B Viruses - 0%3B Other Eukaryotes - 93 (source: NCBI BLink).
AT4G37120 gene SMP2 7.10 4:17486516 Encodes a zinc finger containing protein similar to step II splicing factors that is similar to SMP1. SMP2 is also reduced in SMP1 epigenetic alleles%3B plants make smaller organs having reduced cell numbers but increased cell size.
AT4G38495 gene 5.95 4:18007357 CONTAINS InterPro DOMAIN/s: YL1 nuclear%2C C-terminal (InterPro:IPR013272)%3B Has 279 Blast hits to 279 proteins in 147 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 94%3B Fungi - 133%3B Plants - 35%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).
AT4G37310 gene CYP81H1 5.67 4:17555899 member of CYP81H
AT4G38950 gene 5.60 4:18154395 ATP binding microtubule motor family protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based process%2C microtubule-based movement%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3490 (InterPro:IPR021881)%2C Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT2G21300.2)%3B Has 9938 Blast hits to 9516 proteins in 306 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4372%3B Fungi - 1331%3B Plants - 1857%3B Viruses - 0%3B Other Eukaryotes - 2378 (source: NCBI BLink).
AT4G33270 gene CDC20.1 4.85 4:16044169 Encodes a CDC20 protein that interacts with APC subunits%2C components of the mitochondrial checkpoint complex and mitotic cyclin substrates and is indispensable for normal plant development and fertility.
AT4G39180 gene SEC14 4.83 4:18243726 encodes a protein that complements the function of a sec14(ts) mutant of S. cerevisiae
AT4G37925 gene NdhM 4.26 4:17830533 Encodes subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.
AT4G39710 gene PnsL4 4.14 4:18426492 FK506-binding protein 16-2 (FKBP16-2)%3B FUNCTIONS IN: FK506 binding%2C peptidyl-prolyl cis-trans isomerase activity%3B INVOLVED IN: protein folding%3B LOCATED IN: thylakoid%2C chloroplast thylakoid membrane%2C chloroplast thylakoid lumen%2C chloroplast%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (InterPro:IPR001179)%3B BEST Arabidopsis thaliana protein match is: FK506-binding protein 13 (TAIR:AT5G45680.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G37820 gene 4.03 4:17785254 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22795.1)%3B Has 433572 Blast hits to 177005 proteins in 4263 species: Archae - 2016%3B Bacteria - 67591%3B Metazoa - 157995%3B Fungi - 49745%3B Plants - 22011%3B Viruses - 2192%3B Other Eukaryotes - 132022 (source: NCBI BLink).
AT4G35180 gene LHT7 3.86 4:16737835 LYS/HIS transporter 7 (LHT7)%3B CONTAINS InterPro DOMAIN/s: Amino acid transporter%2C transmembrane (InterPro:IPR013057)%3B BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT1G47670.1)%3B Has 1572 Blast hits to 1571 proteins in 189 species: Archae - 0%3B Bacteria - 36%3B Metazoa - 144%3B Fungi - 199%3B Plants - 1047%3B Viruses - 0%3B Other Eukaryotes - 146 (source: NCBI BLink).
AT4G36970 gene 3.84 4:17429744 Remorin family protein%3B FUNCTIONS IN: DNA binding%3B LOCATED IN: plasma membrane%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Remorin%2C C-terminal (InterPro:IPR005516)%3B BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT1G45207.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G38740 gene ROC1 3.61 4:18083395 Encodes cytosolic cyclophilin ROC1.
AT3G54880 gene 3.45 3:20336687 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.2)%3B Has 137 Blast hits to 137 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 136%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
AT4G39900 gene 3.42 4:18508254 unknown protein%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G36870 gene GSL09 3.38 5:14518008 encodes a gene similar to callose synthase
AT4G37180 gene 3.35 4:17504428 myb family transcription factor%2C contains Pfam domain%2C PF00249: Myb-like DNA-binding domain l%3B also isolated as a putative cytoskeletal protein in a yeast screen
AT4G26310 gene 3.32 4:13313417 elongation factor P (EF-P) family protein%3B FUNCTIONS IN: translation elongation factor activity%3B INVOLVED IN: translational elongation%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Translation elongation factor P/YeiP%2C conserved site (InterPro:IPR013852)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Translation elongation factor%2C KOW-like (InterPro:IPR013185)%2C Translation protein SH3-like%2C subgroup (InterPro:IPR014722)%2C Elongation factor P%2C C-terminal (InterPro:IPR015365)%2C Translation protein SH3-like (InterPro:IPR008991)%2C Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Translation elongation factor P/YeiP%2C central (InterPro:IPR001059)%3B BEST Arabidopsis thaliana protein match is: elongation factor P (EF-P) family protein (TAIR:AT3G08740.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G33160 gene 3.26 4:15993957 F-box family protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G27340.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G33920 gene 3.24 4:16260481 Protein phosphatase 2C family protein%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C catalytic activity%3B INVOLVED IN: protein amino acid dephosphorylation%3B LOCATED IN: mitochondrion%2C protein serine/threonine phosphatase complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (InterPro:IPR000222)%2C Protein phosphatase 2C-related (InterPro:IPR001932)%2C Protein phosphatase 2C (InterPro:IPR015655)%2C Protein phosphatase 2C%2C N-terminal (InterPro:IPR014045)%3B BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1)%3B Has 5306 Blast hits to 5302 proteins in 304 species: Archae - 0%3B Bacteria - 42%3B Metazoa - 1364%3B Fungi - 564%3B Plants - 2405%3B Viruses - 3%3B Other Eukaryotes - 928 (source: NCBI BLink).
AT4G13575 gene 3.21 4:07890249 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G36390 gene 3.20 4:17194573 Methylthiotransferase%3B FUNCTIONS IN: 4 iron%2C 4 sulfur cluster binding%2C iron-sulfur cluster binding%2C transferase activity%2C catalytic activity%3B INVOLVED IN: RNA modification%2C tRNA modification%3B LOCATED IN: chloroplast%2C cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Methylthiotransferase (InterPro:IPR005839)%2C tRNA-i(6)A37 modification enzyme MiaB (InterPro:IPR006463)%2C Methylthiotransferase%2C conserved site (InterPro:IPR020612)%2C Elongator protein 3/MiaB/NifB (InterPro:IPR006638)%2C Methylthiotransferase%2C N-terminal (InterPro:IPR013848)%2C Radical SAM (InterPro:IPR007197)%2C Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792)%3B BEST Arabidopsis thaliana protein match is: Methylthiotransferase (TAIR:AT1G72090.1)%3B Has 15610 Blast hits to 15591 proteins in 2425 species: Archae - 356%3B Bacteria - 9631%3B Metazoa - 288%3B Fungi - 1%3B Plants - 108%3B Viruses - 0%3B Other Eukaryotes - 5226 (source: NCBI BLink).
AT4G09820 gene TT8 3.18 4:06181881 TT8 is a regulation factor that acts in a concerted action with TT1%2C PAP1 and TTG1 on the regulation of flavonoid pathways%2C namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2%2C TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development. It binds the promoter of both AT3G26790 and AT1G28300.
AT2G20495 gene 3.18 2:08832957 CONTAINS InterPro DOMAIN/s: Serine-threonine protein kinase 19 (InterPro:IPR018865)%3B Has 155 Blast hits to 154 proteins in 53 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 95%3B Fungi - 5%3B Plants - 34%3B Viruses - 0%3B Other Eukaryotes - 21 (source: NCBI BLink).
AT4G36515 gene 3.05 4:17229550 unknown protein%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).
AT4G39770 gene TPPH 3.05 4:18448865 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein%3B FUNCTIONS IN: catalytic activity%2C trehalose-phosphatase activity%3B INVOLVED IN: trehalose biosynthetic process%2C metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase%2C subfamily IIB (InterPro:IPR006379)%2C Trehalose-phosphatase (InterPro:IPR003337)%3B BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT2G22190.1)%3B Has 2411 Blast hits to 2406 proteins in 857 species: Archae - 41%3B Bacteria - 1356%3B Metazoa - 219%3B Fungi - 156%3B Plants - 489%3B Viruses - 0%3B Other Eukaryotes - 150 (source: NCBI BLink).
AT3G55900 gene 3.01 3:20742166 F-box family protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%3B Has 37 Blast hits to 37 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 37%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
GO domain Definition P-value
protein peptidyl-prolyl isomerization biological_process "The modification of a protein by cis-trans isomerization of a proline residue." [GOC:krc, PMID:16959570] 8.24e-04
peptidyl-prolyl cis-trans isomerase activity molecular_function "Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0)." [EC:5.2.1.8] 8.24e-04