Interaction network for RSM_5_22.05
Layout:
Zoom

Total candidates:
Total candidates with interaction:
legend
Please select a peak in the plot
?
Show the eQTL profiles of traits with a LOD score above the threshold at the selected locus.
Trait (count=40) Type Name LOD score Position Description
AT3G03010 gene 4.49 3:00678182 Peptidyl-tRNA hydrolase II (PTH2) family protein%3B FUNCTIONS IN: aminoacyl-tRNA hydrolase activity%3B INVOLVED IN: translation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase%2C PTH2 (InterPro:IPR002833)%3B BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase II (PTH2) family protein (TAIR:AT5G16870.1)%3B Has 884 Blast hits to 884 proteins in 331 species: Archae - 257%3B Bacteria - 13%3B Metazoa - 196%3B Fungi - 135%3B Plants - 86%3B Viruses - 8%3B Other Eukaryotes - 189 (source: NCBI BLink).
AT5G46760 gene MYC3 4.43 5:18974022 MYC3 is a JAZ-interacting transcription factor that act together with MYC2 and MYC4 to activate JA-responses.
AT5G48540 gene 4.33 5:19668964 receptor-like protein kinase-related family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to karrikin%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902)%3B BEST Arabidopsis thaliana protein match is: Receptor-like protein kinase-related family protein (TAIR:AT3G22060.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G46150 gene 4.01 5:18707546 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284%2C transmembrane eukaryotic (InterPro:IPR005045)%3B BEST Arabidopsis thaliana protein match is: ALA-interacting subunit 1 (TAIR:AT3G12740.1)%3B Has 857 Blast hits to 857 proteins in 216 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 252%3B Fungi - 234%3B Plants - 162%3B Viruses - 0%3B Other Eukaryotes - 209 (source: NCBI BLink).
AT1G77885 gene 3.84 1:29289873 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22065.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).
AT5G49690 gene 3.55 5:20189655 UDP-Glycosyltransferase superfamily protein%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: metabolic process%3B CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213)%3B BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT5G65550.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G48300 gene ADG1 3.45 5:19570238 Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS1 is the major small subunit isoform present in all plant tissues tested.
AT5G07190 gene ATS3 3.35 5:02237474 Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function.
AT2G23580 gene MES4 3.32 2:10033043 Encodes a protein shown to have carboxylesterase activity and methyl salicylate esterase activity in vitro. This protein does not act on methyl IAA%2C methyl JA%2C MeGA4%2C or MEGA9 in vitro.
AT5G48610 gene 3.22 5:19711541 unknown protein%3B Has 43043 Blast hits to 23768 proteins in 1327 species: Archae - 108%3B Bacteria - 3952%3B Metazoa - 17076%3B Fungi - 3614%3B Plants - 1643%3B Viruses - 204%3B Other Eukaryotes - 16446 (source: NCBI BLink).
AT4G27710 gene CYP709B3 3.20 4:13828189 member of CYP709B
AT2G39415 gene 3.15 2:16458607 F-box family protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT3G18150.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).
AT1G29010 gene 3.09 1:10117715 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34010.1)%3B Has 18 Blast hits to 17 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 18%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G56700 gene FAR6 3.06 3:20999409 Encodes a fatty-acyl-CoA reductase that is expressed in response to wounding.
AT5G54170 gene 3.05 5:21984878 Polyketide cyclase/dehydrase and lipid transport superfamily protein%3B CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913)%3B BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G64720.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G54100 gene 3.03 5:21953700 SPFH/Band 7/PHB domain-containing membrane-associated protein family%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: callus%3B CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107)%3B BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT4G27585.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT3G01572 gene -3.02 3:00222968 unknown protein%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT1G29785 gene -3.03 1:10426779 Potential natural antisense gene%2C locus overlaps with AT1G29780
AT1G62530 gene -3.04 1:23146200 Plant protein of unknown function (DUF863)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863%2C plant (InterPro:IPR008581)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G12120.1)%3B Has 96 Blast hits to 90 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 96%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT5G45800 gene MEE62 -3.15 5:18575520 maternal effect embryo arrest 62 (MEE62)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C transmembrane receptor protein tyrosine kinase signaling pathway%2C embryo development ending in seed dormancy%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G24230.1)%3B Has 86435 Blast hits to 54726 proteins in 1691 species: Archae - 65%3B Bacteria - 6179%3B Metazoa - 19674%3B Fungi - 1594%3B Plants - 54067%3B Viruses - 116%3B Other Eukaryotes - 4740 (source: NCBI BLink).
AT5G65360 gene -3.18 5:26119859 Histone superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: chloroplast%2C nucleosome%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT2G16835 gene -3.25 2:07295851 Aquaporin-like superfamily protein%3B FUNCTIONS IN: water channel activity%2C transporter activity%3B INVOLVED IN: transport%3B LOCATED IN: membrane%3B CONTAINS InterPro DOMAIN/s: Major intrinsic protein (InterPro:IPR000425)%3B Has 833 Blast hits to 833 proteins in 126 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 833%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT5G51910 gene -3.31 5:21094547 TCP family transcription factor %3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C TCP (InterPro:IPR005333)%2C Transcription factor TCP subgroup (InterPro:IPR017887)%3B BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT2G45680.1)%3B Has 731 Blast hits to 731 proteins in 79 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 731%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G64220 gene TOM7-2 -3.39 1:23833088 translocase of outer membrane 7 kDa subunit 2 (TOM7-2)%3B FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity%3B INVOLVED IN: intracellular protein transport%3B LOCATED IN: mitochondrial outer membrane%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Mitochondrial outer membrane translocase complex%2C subunit Tom7 (InterPro:IPR012621)%3B BEST Arabidopsis thaliana protein match is: Mitochondrial outer membrane translocase complex%2C subunit Tom7 (TAIR:AT5G41685.1)%3B Has 49 Blast hits to 49 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 49%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT5G45530 gene -3.40 5:18454188 Protein of unknown function (DUF594)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: C globular stage%2C F mature embryo stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF594) (TAIR:AT5G45470.1)%3B Has 1338 Blast hits to 867 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1338%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT5G54520 gene -3.50 5:22146504 Transducin/WD40 repeat-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G10580.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).
AT5G54970 gene -3.56 5:22312976 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26960.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT4G28570 gene -3.77 4:14119353 Long-chain fatty alcohol dehydrogenase family protein%3B FUNCTIONS IN: electron carrier activity%2C oxidoreductase activity%2C acting on CH-OH group of donors%2C FAD binding%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase%2C N-terminal (InterPro:IPR000172)%2C Glucose-methanol-choline oxidoreductase%2C C-terminal (InterPro:IPR007867)%2C Long-chain fatty alcohol dehydrogenase (InterPro:IPR012400)%3B BEST Arabidopsis thaliana protein match is: Long-chain fatty alcohol dehydrogenase family protein (TAIR:AT1G03990.1)%3B Has 3734 Blast hits to 3404 proteins in 773 species: Archae - 46%3B Bacteria - 2451%3B Metazoa - 41%3B Fungi - 246%3B Plants - 166%3B Viruses - 0%3B Other Eukaryotes - 784 (source: NCBI BLink).
AT5G25300 gene -3.94 5:08780258 CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%3B BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT5G25290.1)%3B Has 285 Blast hits to 224 proteins in 5 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 282%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).
AT5G56100 gene -3.95 5:22716917 glycine-rich protein / oleosin%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: lipid storage%3B LOCATED IN: monolayer-surrounded lipid storage body%2C integral to membrane%2C membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT4G29460 gene PLA2-GAMMA -4.12 4:14482815 Encodes one of the four Arabidopsis phospholipase PLA2 parologs: AT2G06925 (PLA2-ALPHA)%2C AT2G19690 (PLA2-BETA)%2C AT4G29460 (PLA2-GAMMA) and AT4G29470 (PLA2-DELTA). Involved in pollen development and germination and tube growth.
AT5G55400 gene -4.75 5:22455369 Actin binding Calponin homology (CH) domain-containing protein%3B FUNCTIONS IN: actin binding%3B LOCATED IN: vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Actinin-type%2C actin-binding%2C conserved site (InterPro:IPR001589)%2C Calponin-homology (InterPro:IPR016146)%2C Calponin-like actin-binding (InterPro:IPR001715)%3B BEST Arabidopsis thaliana protein match is: fimbrin 1 (TAIR:AT4G26700.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G54300 gene -4.95 5:22053969 Protein of unknown function (DUF761)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761%2C plant (InterPro:IPR008480)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G61260.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G53970 gene TAT7 -5.06 5:21910471 encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment
AT5G54390 gene HL -5.10 5:22085998 Encodes a 3'-phosphoadenosine-5'-phosphate (PAP) phosphatase that is sensitive to physiological concentrations of Na+. It does not also act as inositol polyphosphate 1-phosphatases%2C which other members of the HAL2-like family do. It is proposed that AHL acts in concert with sulphotransferases to prevent both the toxicity of PAP on RNA processing enzymes as well as the product inhibition of PAP on sulphate conjugation.
AT5G44910 gene -5.19 5:18137349 Toll-Interleukin-Resistance (TIR) domain family protein%3B FUNCTIONS IN: transmembrane receptor activity%3B INVOLVED IN: signal transduction%2C defense response%2C innate immune response%3B LOCATED IN: intrinsic to membrane%3B EXPRESSED IN: hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45000.1)%3B Has 1558 Blast hits to 1491 proteins in 44 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1558%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT5G45500 gene -5.45 5:18432446 RNI-like superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G45520.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G54960 gene PDC2 -6.36 5:22310553 pyruvate decarboxylase-2
AT5G54290 gene CcdA -8.04 5:22051034 Encodes CcdA%2C a thylakoid membrane protein required for the transfer of reducing equivalents from stroma to thylakoid lumen.
AT5G53940 gene -8.58 5:21896987 Yippee family putative zinc-binding protein%3B CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910)%3B BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT2G40110.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).