Interaction network for T1G11
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Show the eQTL profiles of traits with a LOD score above the threshold at the selected locus.
Trait (count=23) Type Name LOD score Position Description
AT1G02770 gene 33.97 1:00604873 Protein of unknown function (DUF626)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626%2C Arabidopsis thaliana (InterPro:IPR006462)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G19060.1)%3B Has 209 Blast hits to 208 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 209%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G05780 gene 24.83 1:01726558 Vacuolar ATPase assembly integral membrane protein VMA21-like domain%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (InterPro:IPR019013)%3B BEST Arabidopsis thaliana protein match is: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (TAIR:AT2G31710.1)%3B Has 33 Blast hits to 33 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 33%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G05070 gene 20.45 1:01457007 Protein of unknown function (DUF1068)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1068) (TAIR:AT2G32580.1)%3B Has 119 Blast hits to 119 proteins in 15 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 116%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
AT1G04790 gene 19.47 1:01344989 RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G55530.1)%3B Has 9425 Blast hits to 9403 proteins in 278 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2591%3B Fungi - 765%3B Plants - 4746%3B Viruses - 72%3B Other Eukaryotes - 1251 (source: NCBI BLink).
AT1G03430 gene AHP5 12.44 1:00847793 Encodes AHP5%2C one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1)%2C AT3G29350 (AHP2)%2C AT5G39340 (AHP3)%2C AT3G16360 (AHP4)%2C AT1G03430 (AHP5) and AT1G80100 (AHP6).
AT1G04590 gene 12.10 1:01258556 BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1)%3B Has 111 Blast hits to 111 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 109%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).
AT1G04640 gene LIP2 9.98 1:01292023 Lipoyltransferase%2C located in mitochondria but not found in chloroplasts
AT1G07360 gene MAC5A 7.69 1:02260317 Encodes MAC5A%2C a component of the MOS4-associated complex (MAC) that contributes to snc1- mediated autoimmunity. MAC is a highly conserved nuclear protein complex associated with the spliceosome. Homologues include AT1G07360 (MAC5A)%2C AT2G29580 (MAC5B) and AT5G07060 (MAC5C).
AT1G07750 gene 7.28 1:02403992 RmlC-like cupins superfamily protein%3B FUNCTIONS IN: copper ion binding%2C zinc ion binding%2C nutrient reservoir activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C 11-S seed storage protein%2C plant (InterPro:IPR006044)%3B BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT2G28680.1)%3B Has 920 Blast hits to 832 proteins in 102 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 3%3B Fungi - 0%3B Plants - 914%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
AT1G04400 gene CRY2 6.97 1:01185512 Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a closed conformation to suppress the NC80 motif in the absence of light. In response to blue light%2C the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an open conformation%2C resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.
AT1G05830 gene ATX2 6.03 1:01754130 Encodes a homolog of trithorax%2C a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4%2C ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1.
AT1G02300 gene 5.00 1:00453107 Cysteine proteinases superfamily protein%3B FUNCTIONS IN: cysteine-type endopeptidase activity%2C cysteine-type peptidase activity%3B INVOLVED IN: proteolysis%2C regulation of catalytic activity%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase C1A%2C papain (InterPro:IPR013128)%2C Peptidase C1A%2C cathepsin B (InterPro:IPR015643)%2C Peptidase C1A%2C papain C-terminal (InterPro:IPR000668)%2C Peptidase%2C cysteine peptidase active site (InterPro:IPR000169)%2C Peptidase C1A%2C propeptide (InterPro:IPR012599)%3B BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02305.1)%3B Has 7127 Blast hits to 7085 proteins in 649 species: Archae - 51%3B Bacteria - 96%3B Metazoa - 3215%3B Fungi - 4%3B Plants - 1554%3B Viruses - 146%3B Other Eukaryotes - 2061 (source: NCBI BLink).
AT5G33256 gene 4.90 5:12523691 transposable element gene [Source:TAIR;Acc:AT5G33256]
AT1G02660 gene -4.12 1:00571826 alpha/beta-Hydrolases superfamily protein%3B FUNCTIONS IN: triglyceride lipase activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Lipase%2C class 3 (InterPro:IPR002921)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G62590.1)%3B Has 747 Blast hits to 737 proteins in 148 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 209%3B Fungi - 146%3B Plants - 175%3B Viruses - 15%3B Other Eukaryotes - 175 (source: NCBI BLink).
AT1G03080 gene NET1D -4.80 1:00731554 kinase interacting (KIP1-like) family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053)%2C KIP1-like (InterPro:IPR011684)%3B BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT3G22790.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT3G61113 gene -5.90 3:22614385 Ubiquitin related modifier 1%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Ubiquitin related modifier 1 (InterPro:IPR015221)%2C Ubiquitin-related modifier 1 (InterPro:IPR017188)%2C Molybdopterin synthase/thiamin biosynthesis sulphur carrier%2C beta-grasp (InterPro:IPR016155)%3B BEST Arabidopsis thaliana protein match is: Ubiquitin related modifier 1 (TAIR:AT2G45695.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT1G02690 gene IMPA-6 -6.06 1:00584134 Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.
AT1G03950 gene VPS2.3 -7.57 1:01011151 vacuolar protein sorting-associated protein 2.3 (VPS2.3)%3B CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024)%3B BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G44560.1)%3B Has 1693 Blast hits to 1691 proteins in 237 species: Archae - 2%3B Bacteria - 12%3B Metazoa - 754%3B Fungi - 334%3B Plants - 366%3B Viruses - 0%3B Other Eukaryotes - 225 (source: NCBI BLink).
AT1G04570 gene -7.64 1:01246601 Major facilitator superfamily protein%3B FUNCTIONS IN: transporter activity%3B INVOLVED IN: transport%3B LOCATED IN: chloroplast%2C membrane%3B CONTAINS InterPro DOMAIN/s: Biopterin transport-related protein BT1 (InterPro:IPR004324)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G33280.1)%3B Has 816 Blast hits to 814 proteins in 271 species: Archae - 6%3B Bacteria - 387%3B Metazoa - 0%3B Fungi - 18%3B Plants - 232%3B Viruses - 0%3B Other Eukaryotes - 173 (source: NCBI BLink).
AT1G02816 gene -7.80 1:00621453 Protein of unknown function%2C DUF538%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF538 (TAIR:AT4G02370.1)%3B Has 559 Blast hits to 558 proteins in 20 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 558%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
AT1G03120 gene RAB28 -8.17 1:00752191 Atrab28 plays a role in the ion cell balance during late embryogenesis and germination.
AT1G02930 gene GSTF6 -12.46 1:00661088 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).
AT1G03220 gene -13.50 1:00786832 Eukaryotic aspartyl protease family protein%3B FUNCTIONS IN: aspartic-type endopeptidase activity%3B INVOLVED IN: response to salt stress%3B LOCATED IN: cell wall%2C plasma membrane%2C membrane%2C plant-type cell wall%3B EXPRESSED IN: 6 plant structures%3B CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109)%2C Peptidase aspartic%2C catalytic (InterPro:IPR009007)%2C Peptidase A1 (InterPro:IPR001461)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G03230.1)%3B Has 1398 Blast hits to 1391 proteins in 46 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1396%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).