eQTL visualization and investigation

Show the eQTL profiles of traits with a LOD score above the threshold at the selected locus.

Trait (count=21)	Type	Name	LOD score	Position	Description
AT2G42170	gene		25.43	2:17577714	Actin family protein%3B FUNCTIONS IN: structural constituent of cytoskeleton%2C ATP binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: actin cytoskeleton%3B EXPRESSED IN: vascular bundle%3B CONTAINS InterPro DOMAIN/s: Actin%2C conserved site (InterPro:IPR004001)%2C Actin/actin-like (InterPro:IPR004000)%3B BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT2G42100.1)%3B Has 13233 Blast hits to 12851 proteins in 2620 species: Archae - 6%3B Bacteria - 13%3B Metazoa - 5650%3B Fungi - 3392%3B Plants - 1602%3B Viruses - 2%3B Other Eukaryotes - 2568 (source: NCBI BLink).
AT2G43590	gene		14.28	2:18081304	Chitinase family protein%3B FUNCTIONS IN: chitin binding%2C chitinase activity%3B INVOLVED IN: carbohydrate metabolic process%2C cell wall macromolecule catabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C 4 anthesis%2C C globular stage%2C LP.02 two leaves visible%3B CONTAINS InterPro DOMAIN/s: Chitin-binding%2C type 1%2C conserved site (InterPro:IPR018371)%2C Glycoside hydrolase%2C family 19 (InterPro:IPR016283)%2C Chitin-binding%2C type 1 (InterPro:IPR001002)%2C Glycoside hydrolase%2C family 19%2C catalytic (InterPro:IPR000726)%3B BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43580.1)%3B Has 2744 Blast hits to 2502 proteins in 524 species: Archae - 0%3B Bacteria - 615%3B Metazoa - 34%3B Fungi - 202%3B Plants - 1760%3B Viruses - 20%3B Other Eukaryotes - 113 (source: NCBI BLink).
AT2G44525	gene		12.89	2:18382070	Protein of unknown function (DUF498/DUF598)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF498 (InterPro:IPR007523)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF498/DUF598) (TAIR:AT3G60150.1)%3B Has 933 Blast hits to 933 proteins in 412 species: Archae - 2%3B Bacteria - 549%3B Metazoa - 118%3B Fungi - 87%3B Plants - 61%3B Viruses - 0%3B Other Eukaryotes - 116 (source: NCBI BLink).
AT2G43580	gene		11.50	2:18078649	Chitinase family protein%3B FUNCTIONS IN: chitin binding%2C chitinase activity%3B INVOLVED IN: carbohydrate metabolic process%2C cell wall macromolecule catabolic process%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Chitin-binding%2C type 1%2C conserved site (InterPro:IPR018371)%2C Glycoside hydrolase%2C family 19 (InterPro:IPR016283)%2C Chitin-binding%2C type 1 (InterPro:IPR001002)%2C Glycoside hydrolase%2C family 19%2C catalytic (InterPro:IPR000726)%3B BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1)%3B Has 2596 Blast hits to 2382 proteins in 484 species: Archae - 0%3B Bacteria - 530%3B Metazoa - 33%3B Fungi - 193%3B Plants - 1749%3B Viruses - 5%3B Other Eukaryotes - 86 (source: NCBI BLink).
AT2G42880	gene	MPK20	9.59	2:17840168	member of MAP Kinase
AT2G46690	gene		5.31	2:19180705	SAUR-like auxin-responsive protein family %3B CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676)%3B BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT3G61900.1)%3B Has 1291 Blast hits to 1280 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1290%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
AT2G41880	gene	GK-1	4.41	2:17474527	Guanylate kinase. Involved in nucleotide metabolism.
AT2G42365	gene		4.11	2:17640621	Potential natural antisense gene%2C locus overlaps with AT2G42360 and AT2G42370
AT2G46870	gene	NGA1	4.01	2:19260906	NGATHA1 (NGA1)%3B CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340)%3B BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G61970.1)%3B Has 1372 Blast hits to 1367 proteins in 72 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1372%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT2G46080	gene	BPS2	-3.90	2:18948116	Encodes a protein related to BYPASS1 (BPS1). Regulates production of mobile compound: bps signal.
AT2G43260	gene		-3.92	2:17983506	F-box and associated interaction domains-containing protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated domain%2C type 1 (InterPro:IPR006527)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G43445.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).
AT2G43810	gene	LSM6B	-3.96	2:18149197	Small nuclear ribonucleoprotein family protein%3B CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163)%2C Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (InterPro:IPR006649)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G59810.1)%3B Has 1180 Blast hits to 1180 proteins in 300 species: Archae - 305%3B Bacteria - 0%3B Metazoa - 337%3B Fungi - 255%3B Plants - 126%3B Viruses - 0%3B Other Eukaryotes - 157 (source: NCBI BLink).
AT2G41780	gene		-4.03	2:17427922	unknown protein%3B Has 6 Blast hits to 6 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 6%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT2G40290	gene		-4.36	2:16828766	Encodes an eIF2alpha homolog that can be phosphorylated by GCN2 in vitro.
AT2G46950	gene	CYP709B2	-4.47	2:19289087	member of CYP709B
AT2G46580	gene		-4.50	2:19129230	Pyridoxamine 5'-phosphate oxidase family protein%3B FUNCTIONS IN: FMN binding%2C pyridoxamine-phosphate oxidase activity%3B INVOLVED IN: oxidation reduction%2C pyridoxine biosynthetic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Pyridoxamine 5%26apos%3B-phosphate oxidase (InterPro:IPR000659)%2C FMN-binding split barrel (InterPro:IPR012349)%2C Pyridoxamine 5%26apos%3B-phosphate oxidase-like%2C FMN-binding domain (InterPro:IPR011576)%2C FMN-binding split barrel%2C related (InterPro:IPR009002)%3B Has 1290 Blast hits to 1290 proteins in 309 species: Archae - 0%3B Bacteria - 510%3B Metazoa - 56%3B Fungi - 60%3B Plants - 40%3B Viruses - 0%3B Other Eukaryotes - 624 (source: NCBI BLink).
AT2G45690	gene	SSE1	-5.59	2:18823167	Encodes a protein with similarity to yeast Pep16p%2C a membrane localized protein involved in peroxisome assembly and protein-trafficking. SSE1 mutant seeds do not accumulate oils and dessicated seeds have a shrunken appearance. Involved in protein and oil body biogenesis. SSE is expressed during seed development%2C reaching the highest peak in mature siliques. Expression in leaves and roots is low compared to cotyledons and flowers. Located in peroxisomes and endoplasmic reticulum. Homologous to the peroxin PEX16 and complements the pex16 mutants of the yeast Yarrowia lipolytica.
AT2G41640	gene		-6.58	2:17360374	Glycosyltransferase family 61 protein%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyltransferase AER61%2C uncharacterised (InterPro:IPR007657)%3B BEST Arabidopsis thaliana protein match is: Glycosyltransferase family 61 protein (TAIR:AT3G57380.1)%3B Has 674 Blast hits to 674 proteins in 105 species: Archae - 0%3B Bacteria - 55%3B Metazoa - 158%3B Fungi - 12%3B Plants - 386%3B Viruses - 0%3B Other Eukaryotes - 63 (source: NCBI BLink).
AT2G45150	gene	CDS4	-6.72	2:18613305	cytidinediphosphate diacylglycerol synthase 4 (CDS4)%3B CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374)%3B BEST Arabidopsis thaliana protein match is: cytidinediphosphate diacylglycerol synthase 5 (TAIR:AT3G60620.1)%3B Has 7499 Blast hits to 7494 proteins in 2620 species: Archae - 2%3B Bacteria - 5196%3B Metazoa - 180%3B Fungi - 137%3B Plants - 143%3B Viruses - 0%3B Other Eukaryotes - 1841 (source: NCBI BLink).
AT2G41830	gene		-12.82	2:17450109	Uncharacterized protein%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 7 growth stages%3B BEST Arabidopsis thaliana protein match is: Uncharacterized protein (TAIR:AT5G21080.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).
AT2G43540	gene		-15.21	2:18072127	unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 27 Blast hits to 27 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 27%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).

GO	domain	Definition	P-value
chitinase activity	molecular_function	"Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins." [EC:3.2.1.14, GOC:bf, GOC:kah, GOC:pde, PMID:11468293]	1.05e-02
MAP kinase activity	molecular_function	"Catalysis of the reaction: protein + ATP = protein phosphate + ADP. This reaction is the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli." [GOC:ma, ISBN:0198547684]	1.05e-02
chitin catabolic process	biological_process	"The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues." [GOC:jl, ISBN:0198506732]	1.05e-02
cell wall macromolecule catabolic process	biological_process	"The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall." [GOC:go_curators]	1.05e-02

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