Interaction network for RSM_5_2.35
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Show the eQTL profiles of traits with a LOD score above the threshold at the selected locus.
Trait (count=25) Type Name LOD score Position Description
AT5G07330 gene 20.32 5:02315947 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63060.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G10530 gene 10.01 5:03324824 Concanavalin A-like lectin protein kinase family protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Legume lectin%2C beta chain (InterPro:IPR001220)%2C Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Concanavalin A-like lectin/glucanase%2C subgroup (InterPro:IPR013320)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%3B BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT5G65600.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G05110 gene 9.47 5:01507418 Cystatin/monellin family protein%3B FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25%2C cystatin%2C conserved site (InterPro:IPR018073)%2C Proteinase inhibitor I25%2C cystatin (InterPro:IPR000010)%2C Proteinase inhibitor I25%2C cystatin%2C conserved region (InterPro:IPR020381)%3B BEST Arabidopsis thaliana protein match is: cystatin B (TAIR:AT3G12490.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G07440 gene GDH2 8.02 5:02355759 Encodes the beta-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells.
AT5G03970 gene 7.85 5:01071498 F-box associated ubiquitination effector family protein%3B CONTAINS InterPro DOMAIN/s: F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G07610.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G04310 gene 7.69 5:01202967 Pectin lyase-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C AmbAllergen (InterPro:IPR018082)%2C Pectate lyase/Amb allergen (InterPro:IPR002022)%2C Pectin lyase fold (InterPro:IPR012334)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G54920.1)%3B Has 1753 Blast hits to 1747 proteins in 285 species: Archae - 0%3B Bacteria - 762%3B Metazoa - 0%3B Fungi - 280%3B Plants - 694%3B Viruses - 0%3B Other Eukaryotes - 17 (source: NCBI BLink).
AT5G06130 gene 7.65 5:01853432 chaperone protein dnaJ-related%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61670.2)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).
AT3G30805 gene 7.61 3:12488978 Class II aminoacyl-tRNA and biotin synthetases superfamily protein%3B FUNCTIONS IN: aminoacyl-tRNA ligase activity%2C nucleotide binding%2C lysine-tRNA ligase activity%2C ATP binding%3B INVOLVED IN: lysyl-tRNA aminoacylation%2C translation%2C tRNA aminoacylation for protein translation%3B LOCATED IN: cytoplasm%3B CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase%2C class II (D/K/N) (InterPro:IPR004364)%2C Aminoacyl-tRNA synthetase%2C class II (D/K/N)-like (InterPro:IPR018150)%2C Lysyl-tRNA synthetase%2C class II%2C C-terminal (InterPro:IPR018149)%3B BEST Arabidopsis thaliana protein match is: lysyl-tRNA synthetase 1 (TAIR:AT3G11710.1)%3B Has 6554 Blast hits to 6554 proteins in 2476 species: Archae - 109%3B Bacteria - 4905%3B Metazoa - 156%3B Fungi - 228%3B Plants - 111%3B Viruses - 0%3B Other Eukaryotes - 1045 (source: NCBI BLink).
AT5G06960 gene OBF5 7.38 5:02154746 Encodes a basic leucine zipper (B-ZIP) containing protein that interacts with NPR1 to promote expression of salicylic acid induced genes. Binds the ocs-element.
AT5G11970 gene 7.13 5:03862849 Protein of unknown function (DUF3511)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3511 (InterPro:IPR021899)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3511) (TAIR:AT2G19460.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G10400 gene 6.89 5:03270172 Histone superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: chloroplast%2C nucleosome%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10390.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G05250 gene 6.68 5:01556987 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56360.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G04170 gene 6.58 5:01145431 Calcium-binding EF-hand family protein%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT3G10300.3)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G06265 gene 5.71 5:01905042 hyaluronan mediated motility receptor-related%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22280.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G09230 gene SRT2 5.69 5:02871365 Encodes SRT2%2C a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760%2C SRT2/AT5G09230).
AT5G03650 gene SBE2.2 5.64 5:00931762 Encodes starch branching enzyme (E.C.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout the plant and highest in seedlings and cauline leaves.
AT1G74370 gene 5.54 1:27958086 RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G29270.2)%3B Has 323 Blast hits to 323 proteins in 56 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 171%3B Fungi - 2%3B Plants - 134%3B Viruses - 3%3B Other Eukaryotes - 13 (source: NCBI BLink).
AT5G10770 gene 5.51 5:03403021 Eukaryotic aspartyl protease family protein%3B FUNCTIONS IN: DNA binding%2C aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109)%2C Peptidase aspartic%2C catalytic (InterPro:IPR009007)%2C Peptidase A1 (InterPro:IPR001461)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G10760.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G05360 gene 5.39 5:01588277 unknown protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1)%3B Has 84 Blast hits to 84 proteins in 24 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 0%3B Fungi - 0%3B Plants - 73%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).
AT3G07310 gene 5.26 3:02327818 Protein of unknown function (DUF760)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF760) (TAIR:AT5G48590.1)%3B Has 147 Blast hits to 143 proteins in 27 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 0%3B Fungi - 0%3B Plants - 134%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).
AT1G50480 gene THFS 5.19 1:18701882 10-formyltetrahydrofolate synthetase (THFS) mRNA%2C complete
AT5G03795 gene 5.13 5:01007390 Exostosin family protein%3B LOCATED IN: membrane%3B EXPRESSED IN: embryo%2C sepal%2C flower%3B EXPRESSED DURING: C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263)%3B BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT3G07620.1)%3B Has 1413 Blast hits to 1401 proteins in 109 species: Archae - 0%3B Bacteria - 9%3B Metazoa - 310%3B Fungi - 4%3B Plants - 989%3B Viruses - 0%3B Other Eukaryotes - 101 (source: NCBI BLink).
AT5G08000 gene E13L3 5.10 5:02563366 Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and binds callose.
AT5G10070 gene 5.08 5:03148424 RNase L inhibitor protein-related%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cytosol%2C nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF367 (InterPro:IPR007177)%2C RNase L inhibitor RLI%2C possible metal-binding domain (InterPro:IPR007209)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G06740 gene 5.07 5:02083964 Concanavalin A-like lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Legume lectin%2C beta chain (InterPro:IPR001220)%2C Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Concanavalin A-like lectin/glucanase%2C subgroup (InterPro:IPR013320)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%2C Legume lectin%2C beta chain%2C Mn/Ca-binding site (InterPro:IPR019825)%3B BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT5G55830.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).