Interaction network for CH.238C
Layout:
Zoom

Total candidates:
Total candidates with interaction:
legend
Please select a peak in the plot
?
Show the eQTL profiles of traits with a LOD score above the threshold at the selected locus.
Trait (count=176) Type Name LOD score Position Description
AT4G13010 gene 15.61 4:07600510 Oxidoreductase%2C zinc-binding dehydrogenase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C zinc ion binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: chloroplast thylakoid membrane%2C chloroplast%2C plasma membrane%2C vacuole%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032)%2C Alcohol dehydrogenase GroES-like (InterPro:IPR013154)%2C Alcohol dehydrogenase%2C C-terminal (InterPro:IPR013149)%2C Alcohol dehydrogenase superfamily%2C zinc-containing (InterPro:IPR002085)%3B BEST Arabidopsis thaliana protein match is: Oxidoreductase%2C zinc-binding dehydrogenase family protein (TAIR:AT1G23740.1)%3B Has 34133 Blast hits to 33976 proteins in 2527 species: Archae - 549%3B Bacteria - 21108%3B Metazoa - 1143%3B Fungi - 3531%3B Plants - 1393%3B Viruses - 3%3B Other Eukaryotes - 6406 (source: NCBI BLink).
AT4G12240 gene 14.41 4:07287803 zinc finger (C2H2 type) family protein%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G52010.1)%3B Has 77 Blast hits to 77 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 4%3B Plants - 71%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).
AT1G67623 gene 12.27 1:25342101 F-box family protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74875.1)%3B Has 68 Blast hits to 68 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 68%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G13180 gene 11.89 4:07657094 NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C binding%2C catalytic activity%3B INVOLVED IN: response to arsenic%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040)%2C Glucose/ribitol dehydrogenase (InterPro:IPR002347)%2C Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G03980.1)%3B Has 120427 Blast hits to 120218 proteins in 3552 species: Archae - 981%3B Bacteria - 79077%3B Metazoa - 5738%3B Fungi - 6213%3B Plants - 2676%3B Viruses - 2%3B Other Eukaryotes - 25740 (source: NCBI BLink).
AT4G11800 gene 11.17 4:07093488 Calcineurin-like metallo-phosphoesterase superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C protein serine/threonine phosphatase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843)%3B BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT4G23000.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT1G56030 gene 10.85 1:20957098 RING/U-box superfamily protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C RNA binding%3B INVOLVED IN: translation%2C protein ubiquitination%3B LOCATED IN: ubiquitin ligase complex%3B EXPRESSED IN: flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613)%3B BEST Arabidopsis thaliana protein match is: HEAT/U-box domain-containing protein (TAIR:AT1G56040.1)%3B Has 1736 Blast hits to 1665 proteins in 160 species: Archae - 8%3B Bacteria - 71%3B Metazoa - 346%3B Fungi - 21%3B Plants - 1033%3B Viruses - 3%3B Other Eukaryotes - 254 (source: NCBI BLink).
AT4G12120 gene SEC1B 10.62 4:07256522 member of KEULE Gene Family
AT4G13070 gene 10.23 4:07621346 RNA-binding CRS1 / YhbY (CRM) domain protein%3B FUNCTIONS IN: RNA binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA-binding%2C CRM domain (InterPro:IPR001890)%3B BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT2G28480.1)%3B Has 317 Blast hits to 276 proteins in 27 species: Archae - 2%3B Bacteria - 4%3B Metazoa - 5%3B Fungi - 0%3B Plants - 270%3B Viruses - 0%3B Other Eukaryotes - 36 (source: NCBI BLink).
AT4G11790 gene 8.67 4:07090313 Pleckstrin homology (PH) domain superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: intracellular transport%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156)%2C Pleckstrin homology-type (InterPro:IPR011993)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G14400 gene ACD6 8.57 4:08294165 encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.
AT4G11670 gene 8.54 4:07044401 FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770)%2C Protein of unknown function DUF810 (InterPro:IPR008528)%2C Mammalian uncoordinated homology 13%2C domain 2 (InterPro:IPR014772)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF810) (TAIR:AT5G06970.1)%3B Has 193 Blast hits to 179 proteins in 33 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 6%3B Fungi - 8%3B Plants - 166%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).
AT4G13270 gene 8.40 4:07731189 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein%2C group 2 (InterPro:IPR004864)%3B BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G52330.1)%3B Has 193 Blast hits to 193 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 193%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G22460 gene 8.33 4:11838960 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein%3B FUNCTIONS IN: lipid binding%3B INVOLVED IN: lipid transport%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140)%2C Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612)%2C Plant lipid transfer protein/hydrophobic protein%2C helical domain (InterPro:IPR013770)%3B BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT4G12510.1)%3B Has 751 Blast hits to 745 proteins in 61 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 751%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G12040 gene SAP7 7.79 4:07214577 A20/AN1-like zinc finger family protein%3B FUNCTIONS IN: DNA binding%2C zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C AN1-type (InterPro:IPR000058)%2C Zinc finger%2C A20-type (InterPro:IPR002653)%3B BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT4G22820.2)%3B Has 1062 Blast hits to 1055 proteins in 152 species: Archae - 6%3B Bacteria - 0%3B Metazoa - 438%3B Fungi - 9%3B Plants - 479%3B Viruses - 6%3B Other Eukaryotes - 124 (source: NCBI BLink).
AT4G11450 gene 7.36 4:06958472 Protein of unknown function (DUF3527)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT1G63520.1)%3B Has 132 Blast hits to 129 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4%3B Fungi - 0%3B Plants - 125%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).
AT4G13040 gene 7.30 4:07613213 Integrase-type DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B Has 251 Blast hits to 241 proteins in 58 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 0%3B Plants - 219%3B Viruses - 2%3B Other Eukaryotes - 26 (source: NCBI BLink).
AT4G10790 gene 7.08 4:06640546 UBX domain-containing protein%3B CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577)%2C UBX (InterPro:IPR001012)%3B BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G23040.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT4G11600 gene GPX6 7.04 4:07009769 Encodes glutathione peroxidase.
AT4G13830 gene J20 6.98 4:08010967 DnaJ-like protein (J20)%3B nuclear gene
AT4G13195 gene CLE44 6.98 4:07661792 Belongs to a large gene family%2C called CLE for CLAVATA3/ESR-related%2C encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE44 is identical to that of a dodeca peptide (TDIF%2C tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE41 (At3g24770). The protein is expressed in the vascular system and is involved in axillary bud formation.
AT4G17140 gene 6.80 4:09613330 pleckstrin homology (PH) domain-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291)%2C Pleckstrin homology (InterPro:IPR001849)%3B BEST Arabidopsis thaliana protein match is: calcium-dependent lipid-binding family protein (TAIR:AT1G48090.1)%3B Has 2762 Blast hits to 1565 proteins in 213 species: Archae - 0%3B Bacteria - 36%3B Metazoa - 1081%3B Fungi - 437%3B Plants - 621%3B Viruses - 0%3B Other Eukaryotes - 587 (source: NCBI BLink).
AT4G11900 gene 6.70 4:07149903 S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C PAN-2 domain (InterPro:IPR013227)%2C Apple-like (InterPro:IPR003609)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61550.1)%3B Has 124676 Blast hits to 123050 proteins in 4525 species: Archae - 110%3B Bacteria - 13929%3B Metazoa - 45657%3B Fungi - 10878%3B Plants - 35196%3B Viruses - 465%3B Other Eukaryotes - 18441 (source: NCBI BLink).
AT4G12110 gene SMO1-1 6.60 4:07254029 Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4%2C4-dimethyl-9beta%2C19-cyclopropylsterol-4alpha- methyl oxidase.
AT4G11570 gene 6.24 4:07004265 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C catalytic activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834)%3B BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT3G10970.1)%3B Has 9886 Blast hits to 9886 proteins in 1971 species: Archae - 106%3B Bacteria - 8631%3B Metazoa - 63%3B Fungi - 26%3B Plants - 330%3B Viruses - 0%3B Other Eukaryotes - 730 (source: NCBI BLink).
AT4G17070 gene 6.20 4:09595337 peptidyl-prolyl cis-trans isomerases%3B FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity%3B INVOLVED IN: response to oxidative stress%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891)%2C Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (InterPro:IPR002130)%3B Has 214 Blast hits to 208 proteins in 48 species: Archae - 0%3B Bacteria - 43%3B Metazoa - 9%3B Fungi - 0%3B Plants - 153%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).
AT4G04220 gene RLP46 6.15 4:02033168 receptor like protein 46 (RLP46)%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: signal transduction%2C defense response%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat%2C typical subtype (InterPro:IPR003591)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: receptor like protein 12 (TAIR:AT1G71400.1)%3B Has 134299 Blast hits to 33174 proteins in 1147 species: Archae - 55%3B Bacteria - 10381%3B Metazoa - 36724%3B Fungi - 1470%3B Plants - 75311%3B Viruses - 4%3B Other Eukaryotes - 10354 (source: NCBI BLink).
AT4G15470 gene 6.03 4:08843519 Bax inhibitor-1 family protein%3B CONTAINS InterPro DOMAIN/s: Inhibitor of apoptosis-promoting Bax1 related (InterPro:IPR006214)%3B BEST Arabidopsis thaliana protein match is: Bax inhibitor-1 family protein (TAIR:AT1G03070.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G29560 gene 6.01 4:14503873 CONTAINS InterPro DOMAIN/s: Fanconi Anaemia group E protein%2C C-terminal (InterPro:IPR021025)%3B Has 41 Blast hits to 41 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 10%3B Fungi - 0%3B Plants - 27%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).
AT4G17910 gene 5.99 4:09951173 transferases%2C transferring acyl groups%3B FUNCTIONS IN: transferase activity%2C transferring acyl groups%3B INVOLVED IN: GPI anchor biosynthetic process%3B LOCATED IN: integral to membrane%2C endoplasmic reticulum membrane%3B CONTAINS InterPro DOMAIN/s: GWT1 (InterPro:IPR009447)%3B Has 62 Blast hits to 62 proteins in 39 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 17%3B Fungi - 21%3B Plants - 15%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).
AT4G14220 gene RHF1A 5.88 4:08195881 encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. RHF1a can interact with the cell cycle inhibitor ICK4/KRP6 in vitro. It apppears to target ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF1a is expressed in the carpels throughout floral development. It is expressed in various tissues of the anthers during the early stages of anther development but not in stage 12 flowers and beyond.
AT4G16563 gene 5.75 4:09329620 Eukaryotic aspartyl protease family protein%3B FUNCTIONS IN: aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: plant-type cell wall%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109)%2C Peptidase aspartic%2C catalytic (InterPro:IPR009007)%2C Peptidase A1 (InterPro:IPR001461)%2C Peptidase aspartic%2C active site (InterPro:IPR001969)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G45120.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G13170 gene 5.72 4:07653594 Ribosomal protein L13 family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C cytosolic large ribosomal subunit%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L13 (InterPro:IPR005822)%2C Ribosomal protein L13%2C eukaryotic/archaeal (InterPro:IPR005755)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT5G48760.2)%3B Has 1983 Blast hits to 1983 proteins in 630 species: Archae - 297%3B Bacteria - 430%3B Metazoa - 343%3B Fungi - 199%3B Plants - 322%3B Viruses - 0%3B Other Eukaryotes - 392 (source: NCBI BLink).
AT4G14150 gene PAKRP1 5.66 4:08158436 Microtubule motor kinesin PAKRP1/Kinesin-12A. Together with PAKRP1L/Kinesin-12B%2C serve as linkers of the plus ends of antiparallel microtubules in the phragmoplast.
AT4G14210 gene PDS3 5.41 4:08190190 Encodes phytoene desaturase (phytoene dehydrogenase)%2C an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid.
AT5G62800 gene 5.37 5:25218634 Protein with RING/U-box and TRAF-like domains%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C zinc ion binding%3B INVOLVED IN: multicellular organismal development%2C protein ubiquitination%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: nucleus%3B EXPRESSED IN: stem%3B CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974)%2C Seven-in-absentia protein%2C TRAF-like domain (InterPro:IPR018121)%2C Zinc finger%2C SIAH-type (InterPro:IPR013010)%2C Seven In Absentia Homolog-type (InterPro:IPR013323)%2C Seven-in-absentia protein%2C sina (InterPro:IPR004162)%3B BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT5G37890.1)%3B Has 1629 Blast hits to 1618 proteins in 698 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 1073%3B Fungi - 14%3B Plants - 491%3B Viruses - 0%3B Other Eukaryotes - 49 (source: NCBI BLink).
AT4G18440 gene 5.22 4:10186073 L-Aspartase-like family protein%3B FUNCTIONS IN: N6-(1%2C2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity%2C catalytic activity%3B INVOLVED IN: purine ribonucleotide biosynthetic process%2C purine base biosynthetic process%2C IMP biosynthetic process%3B LOCATED IN: chloroplast%2C chloroplast stroma%3B CONTAINS InterPro DOMAIN/s: Adenylosuccinate lyase C-terminal/plant (InterPro:IPR013539)%2C L-Aspartase-like (InterPro:IPR008948)%2C Adenylosuccinate lyase (InterPro:IPR004769)%2C Fumarate lyase%2C conserved site (InterPro:IPR020557)%2C Lyase 1%2C N-terminal (InterPro:IPR022761)%2C Fumarate lyase (InterPro:IPR000362)%3B BEST Arabidopsis thaliana protein match is: L-Aspartase-like family protein (TAIR:AT1G36280.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G17720 gene 5.17 4:09862365 RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: oxidoreductase activity%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: oxidation reduction%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G46870.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT3G52470 gene 5.11 3:19450506 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein%2C group 2 (InterPro:IPR004864)%3B BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 12 (TAIR:AT2G35960.1)%3B Has 921 Blast hits to 921 proteins in 29 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 921%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G16150 gene 5.09 4:09148059 calmodulin binding%3Btranscription regulators%3B FUNCTIONS IN: calmodulin binding%2C transcription regulator activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683)%2C CG-1 (InterPro:IPR005559)%2C Ankyrin repeat (InterPro:IPR002110)%2C IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: calmodulin binding%3Btranscription regulators (TAIR:AT3G16940.1)%3B Has 3526 Blast hits to 2387 proteins in 249 species: Archae - 2%3B Bacteria - 65%3B Metazoa - 2447%3B Fungi - 177%3B Plants - 543%3B Viruses - 8%3B Other Eukaryotes - 284 (source: NCBI BLink).
AT1G44160 gene 5.05 1:16794820 HSP40/DnaJ peptide-binding protein%3B FUNCTIONS IN: unfolded protein binding%2C heat shock protein binding%3B INVOLVED IN: protein folding%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%2C HSP40/DnaJ peptide-binding (InterPro:IPR008971)%2C Chaperone DnaJ%2C C-terminal (InterPro:IPR002939)%2C Heat shock protein DnaJ (InterPro:IPR003095)%3B BEST Arabidopsis thaliana protein match is: HSP40/DnaJ peptide-binding protein (TAIR:AT1G11040.1)%3B Has 12682 Blast hits to 12678 proteins in 3092 species: Archae - 108%3B Bacteria - 7085%3B Metazoa - 1071%3B Fungi - 625%3B Plants - 733%3B Viruses - 2%3B Other Eukaryotes - 3058 (source: NCBI BLink).
AT1G08860 gene BON3 4.97 1:02841969 Encodes a copine-like protein%2C which is a member of a newly identified class of calcium-dependent%2C phospholipid binding proteins that are present in a wide range of organisms. Overexpression of this gene suppresses bon1-1 phenotypes. Double mutant analyses with bon1-1 suggest that BON1 and BON3 have overlapping functions in maintaining cellular homeostasis and inhibiting cell death.
AT4G16845 gene VRN2 4.95 4:09476069 The VERNALIZATION2 (VRN2) gene mediates vernalization and encodes a nuclear-localized zinc finger protein with similarity to Polycomb group (PcG) proteins of plants and animals. In wild-type Arabidopsis%2C vernalization results in the stable reduction of the levels of the floral repressor FLC. In vrn2 mutants%2C FLC expression is downregulated normally in response to vernalization%2C but instead of remaining low%2C FLC mRNA levels increase when plants are returned to normal temperatures. VRN2 maintains FLC repression after a cold treatment%2C serving as a mechanism for the cellular memory of vernalization. Required for complete repression of FLC. Required for the methylation of histone H3
AT3G28170 gene 4.92 3:10498177 unknown protein%3B Has 2 Blast hits to 1 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G18230 gene 4.88 4:10079998 FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Oligosaccharide biosynthesis protein Alg14 like (InterPro:IPR013969)%3B Has 640 Blast hits to 640 proteins in 277 species: Archae - 4%3B Bacteria - 281%3B Metazoa - 94%3B Fungi - 127%3B Plants - 57%3B Viruses - 0%3B Other Eukaryotes - 77 (source: NCBI BLink).
AT1G67590 gene 4.75 1:25333058 Remorin family protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Remorin%2C C-terminal (InterPro:IPR005516)%3B BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT2G02170.2)%3B Has 1722 Blast hits to 1339 proteins in 252 species: Archae - 3%3B Bacteria - 266%3B Metazoa - 184%3B Fungi - 142%3B Plants - 510%3B Viruses - 4%3B Other Eukaryotes - 613 (source: NCBI BLink).
AT4G15440 gene HPL1 4.74 4:08835368 Encodes a hydroperoxide lyase. Also a member of the CYP74B cytochrome p450 family. In the ecotype Columbia (Col) the gene contains a 10-nucleotide deletion in its first exon that causes it to code for a truncated protein that results in a non-functional hydroperoxide lyase.
AT4G00980 gene 4.70 4:00422478 zinc knuckle (CCHC-type) family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCHC-type (InterPro:IPR001878)%2C DEK%2C C-terminal (InterPro:IPR014876)%3B BEST Arabidopsis thaliana protein match is: transcriptional coactivator p15 (PC4) family protein (KELP) (TAIR:AT4G10920.2)%3B Has 580 Blast hits to 578 proteins in 41 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 36%3B Fungi - 5%3B Plants - 539%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G20400 gene JMJ14 4.69 4:11008558 Encodes a histone H3K4 demethylase repressing floral transition.
AT1G05890 gene ARI5 4.66 1:01779256 ARIADNE 5 (ARI5)%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C6HC-type (InterPro:IPR002867)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%3B BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1)%3B Has 3031 Blast hits to 3006 proteins in 232 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1283%3B Fungi - 592%3B Plants - 643%3B Viruses - 7%3B Other Eukaryotes - 506 (source: NCBI BLink).
AT4G05310 gene 4.63 4:02714765 Ubiquitin-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626)%2C Ubiquitin supergroup (InterPro:IPR019955)%3B BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G05270.1)%3B Has 183 Blast hits to 148 proteins in 39 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 12%3B Fungi - 9%3B Plants - 130%3B Viruses - 2%3B Other Eukaryotes - 24 (source: NCBI BLink).
AT4G39940 gene AKN2 4.61 4:18519599 adenosine-5'-phosphosulfate-kinase (akn2) mRNA%2C complete
AT4G12420 gene SKU5 4.58 4:07349187 Encodes a protein of unknown function involved in directed root tip growth. It is a member of 19-member gene family and is distantly related structurally to the multiple-copper oxidases ascorbate oxidase and laccase%2C though it lacks the copper-binding domains. The protein is glycosylated and GPI-anchored. It is localized to the plasma membrane and the cell wall. The gene is expressed most strongly in expanding tissues.
AT4G13530 gene 4.49 4:07866328 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10080.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G20110 gene VSR7 4.41 4:10875233 VACUOLAR SORTING RECEPTOR 7 (VSR7)%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: intracellular protein transport%2C N-terminal protein myristoylation%2C protein targeting to vacuole%3B LOCATED IN: trans-Golgi network%2C integral to plasma membrane%2C Golgi transport complex%2C membrane%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C EGF-like calcium-binding%2C conserved site (InterPro:IPR018097)%2C Growth factor%2C receptor (InterPro:IPR009030)%3B BEST Arabidopsis thaliana protein match is: VACUOLAR SORTING RECEPTOR 6 (TAIR:AT1G30900.1)%3B Has 14212 Blast hits to 6790 proteins in 278 species: Archae - 2%3B Bacteria - 151%3B Metazoa - 12853%3B Fungi - 13%3B Plants - 489%3B Viruses - 0%3B Other Eukaryotes - 704 (source: NCBI BLink).
AT2G37980 gene 4.39 2:15893800 O-fucosyltransferase family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378)%3B BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT3G54100.1)%3B Has 844 Blast hits to 822 proteins in 31 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 0%3B Plants - 842%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT5G49760 gene 4.37 5:20216332 Leucine-rich repeat protein kinase family protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G49770.1)%3B Has 176974 Blast hits to 136078 proteins in 4850 species: Archae - 147%3B Bacteria - 18062%3B Metazoa - 52743%3B Fungi - 11116%3B Plants - 72814%3B Viruses - 462%3B Other Eukaryotes - 21630 (source: NCBI BLink).
AT2G05320 gene 4.31 2:01935540 beta-1%2C2-N-acetylglucosaminyltransferase II%3B FUNCTIONS IN: acetylglucosaminyltransferase activity%2C alpha-1%2C6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity%3B INVOLVED IN: oligosaccharide biosynthetic process%3B LOCATED IN: Golgi stack%2C integral to membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyltransferase II (InterPro:IPR007754)%3B Has 211 Blast hits to 180 proteins in 71 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 183%3B Fungi - 0%3B Plants - 25%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).
AT4G13110 gene 4.30 4:07641378 BSD domain-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607)%3B BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT1G03350.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G10930 gene 4.23 4:06704911 unknown protein%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT1G49570 gene 4.22 1:18346958 Peroxidase superfamily protein%3B FUNCTIONS IN: peroxidase activity%2C heme binding%3B INVOLVED IN: oxidation reduction%2C response to oxidative stress%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: leaf lamina base%2C leaf whorl%2C hypocotyl%2C sepal%2C root%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255)%2C Plant peroxidase (InterPro:IPR000823)%2C Peroxidases heam-ligand binding site (InterPro:IPR019793)%2C Haem peroxidase%2C plant/fungal/bacterial (InterPro:IPR002016)%2C Peroxidase%2C active site (InterPro:IPR019794)%3B BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G06730.1)%3B Has 4743 Blast hits to 4717 proteins in 317 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 5%3B Fungi - 358%3B Plants - 4305%3B Viruses - 0%3B Other Eukaryotes - 71 (source: NCBI BLink).
AT1G08070 gene OTP82 4.22 1:02514150 Encodes a chloroplast RNA editing factor.
AT4G17620 gene 4.20 4:09821874 glycine-rich protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RAI1 like (InterPro:IPR013961)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT2G47220 gene DUF5 4.18 2:19383743 Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
AT4G33050 gene EDA39 4.17 4:15944199 Encodes a calmodulin-binding protein involved in stomatal movement.
AT1G68940 gene 4.14 1:25921453 Armadillo/beta-catenin-like repeat family protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C binding%3B INVOLVED IN: protein ubiquitination%3B LOCATED IN: ubiquitin ligase complex%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: senescence-associated E3 ubiquitin ligase 1 (TAIR:AT1G20780.1)%3B Has 1977 Blast hits to 1849 proteins in 171 species: Archae - 0%3B Bacteria - 125%3B Metazoa - 104%3B Fungi - 38%3B Plants - 1549%3B Viruses - 3%3B Other Eukaryotes - 158 (source: NCBI BLink).
AT4G17940 gene 4.12 4:09965742 Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G20190.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G10500 gene 4.11 4:06491017 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors%2C oxidoreductase activity%3B INVOLVED IN: secondary metabolic process%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G10490.1)%3B Has 8560 Blast hits to 8509 proteins in 1005 species: Archae - 0%3B Bacteria - 1116%3B Metazoa - 115%3B Fungi - 958%3B Plants - 4983%3B Viruses - 0%3B Other Eukaryotes - 1388 (source: NCBI BLink).
AT4G21570 gene 4.11 4:11470761 Protein of unknown function (DUF300)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT1G11200.1)%3B Has 836 Blast hits to 835 proteins in 194 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 284%3B Fungi - 192%3B Plants - 240%3B Viruses - 0%3B Other Eukaryotes - 120 (source: NCBI BLink).
AT4G12730 gene FLA2 4.08 4:07491227 AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA%2C complete cds
AT4G02820 gene 4.08 4:01258532 Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G02150.1)%3B Has 15018 Blast hits to 7498 proteins in 232 species: Archae - 0%3B Bacteria - 55%3B Metazoa - 87%3B Fungi - 92%3B Plants - 14442%3B Viruses - 0%3B Other Eukaryotes - 342 (source: NCBI BLink).
AT5G44720 gene 4.07 5:18042935 Molybdenum cofactor sulfurase family protein%3B FUNCTIONS IN: molybdenum ion binding%2C Mo-molybdopterin cofactor sulfurase activity%2C pyridoxal phosphate binding%2C catalytic activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pyruvate kinase%2C beta-barrel-like (InterPro:IPR011037)%2C MOSC%2C N-terminal beta barrel (InterPro:IPR005303)%2C Molybdenum cofactor sulfurase%2C C-terminal (InterPro:IPR005302)%3B BEST Arabidopsis thaliana protein match is: Molybdenum cofactor sulfurase family protein (TAIR:AT1G30910.1)%3B Has 1899 Blast hits to 1878 proteins in 681 species: Archae - 4%3B Bacteria - 1056%3B Metazoa - 332%3B Fungi - 289%3B Plants - 100%3B Viruses - 0%3B Other Eukaryotes - 118 (source: NCBI BLink).
AT3G02610 gene 4.07 3:00555626 Plant stearoyl-acyl-carrier-protein desaturase family protein%3B FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity%2C oxidoreductase activity%2C transition metal ion binding%3B INVOLVED IN: oxidation reduction%2C fatty acid metabolic process%2C fatty acid biosynthetic process%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348)%2C Fatty acid desaturase%2C type 2 (InterPro:IPR005067)%2C Ferritin/ribonucleotide reductase-like (InterPro:IPR009078)%3B BEST Arabidopsis thaliana protein match is: Plant stearoyl-acyl-carrier-protein desaturase family protein (TAIR:AT3G02620.1)%3B Has 952 Blast hits to 943 proteins in 217 species: Archae - 0%3B Bacteria - 445%3B Metazoa - 2%3B Fungi - 0%3B Plants - 446%3B Viruses - 0%3B Other Eukaryotes - 59 (source: NCBI BLink).
AT4G14450 gene 4.06 4:08309384 unknown protein%3B LOCATED IN: chloroplast%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1)%3B Has 74 Blast hits to 74 proteins in 6 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 74%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G12860 gene UNE14 4.04 4:07538444 unfertilized embryo sac 14 (UNE14)%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: double fertilization forming a zygote and endosperm%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: leaf whorl%2C male gametophyte%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Parvalbumin (InterPro:IPR008080)%2C EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%2C EF-hand (InterPro:IPR018248)%3B BEST Arabidopsis thaliana protein match is: ARF-GAP domain 11 (TAIR:AT3G07490.1)%3B Has 24675 Blast hits to 17481 proteins in 1590 species: Archae - 2%3B Bacteria - 226%3B Metazoa - 10763%3B Fungi - 4223%3B Plants - 5412%3B Viruses - 0%3B Other Eukaryotes - 4049 (source: NCBI BLink).
AT4G17565 gene 4.04 4:09782508 CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C Protein of unknown function DUF295 (InterPro:IPR005174)%3B BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT2G05970.1)%3B Has 496 Blast hits to 483 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 496%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G12340 gene 4.03 4:07321148 copper ion binding%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G18280 gene 4.00 4:10103866 glycine-rich cell wall protein-related%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G11010 gene NDPK3 4.00 4:06732420 nucleoside diphosphate kinase 3 (ndpk3)%2C located to the inter-membrane space in mitochondria
AT5G04810 gene 3.99 5:01389979 pentatricopeptide (PPR) repeat-containing protein%3B FUNCTIONS IN: nucleotide binding%2C nucleic acid binding%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Pentatricopeptide repeat (InterPro:IPR002885)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G05670.2)%3B Has 66261 Blast hits to 20285 proteins in 585 species: Archae - 7%3B Bacteria - 408%3B Metazoa - 3695%3B Fungi - 2485%3B Plants - 56206%3B Viruses - 140%3B Other Eukaryotes - 3320 (source: NCBI BLink).
AT4G38600 gene KAK 3.98 4:18040623 encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.
AT4G30530 gene GGP1 3.97 4:14920376 Encodes a gamma-glutamyl peptidase%2C outside the GGT family%2C that can hydrolyze gamma-glutamyl peptide bonds.
AT4G12940 gene 3.95 4:07574077 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12930.1)%3B Has 12 Blast hits to 12 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 12%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G12130 gene 3.93 4:07263576 Encodes a mitochondrial COG0354 protein that requires folate for its function in Fe/S cluster biogenesis.
AT1G05450 gene 3.91 1:01599876 Encodes a Protease inhibitor/seed storage/LTP family protein
AT2G16600 gene ROC3 3.91 2:07200423 Encodes cytosolic cyclophilin ROC3.
AT4G19985 gene 3.88 4:10830232 Acyl-CoA N-acyltransferases (NAT) superfamily protein%3B FUNCTIONS IN: N-acetyltransferase activity%3B INVOLVED IN: N-terminal protein myristoylation%2C metabolic process%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase%2C C-terminal (InterPro:IPR022610)%2C GCN5-related N-acetyltransferase (InterPro:IPR000182)%2C Acyl-CoA N-acyltransferase (InterPro:IPR016181)%3B BEST Arabidopsis thaliana protein match is: nuclear shuttle interacting (TAIR:AT1G32070.3)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G16280 gene FCA 3.86 4:09206597 Involved in the promotion of the transition of the vegetative meristem to reproductive development. Four forms of the protein (alpha%2C beta%2C delta and gamma) are produced by alternative splicing. Involved in RNA-mediated chromatin silencing. At one point it was believed to act as an abscisic acid receptor but the paper describing that function was retracted.
ATCG01000 gene YCF1.1 3.84 C:00109405 YCF1.1%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: guard cell%3B CONTAINS InterPro DOMAIN/s: Ycf1 (InterPro:IPR008896)%3B BEST Arabidopsis thaliana protein match is: Ycf1 protein (TAIR:ATCG01130.1).
ATCG01130 gene YCF1.2 3.84 C:00123884 YCF1.2%3B FUNCTIONS IN: protein binding%3B LOCATED IN: chloroplast%2C membrane%3B EXPRESSED IN: cultured cell%2C leaf%3B CONTAINS InterPro DOMAIN/s: Ycf1 (InterPro:IPR008896)%3B BEST Arabidopsis thaliana protein match is: Ycf1 protein (TAIR:ATCG01000.1).
ATMG00370 gene ORF199 3.84 M:00104954 Ycf1 protein%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Ycf1 (InterPro:IPR008896)%3B BEST Arabidopsis thaliana protein match is: Ycf1 protein (TAIR:AT2G07739.1).
AT4G15000 gene 3.84 4:08571816 Ribosomal L27e protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic ribosome%2C ribosome%2C cytosolic large ribosomal subunit%2C intracellular%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L27e%2C conserved site (InterPro:IPR018262)%2C Ribosomal protein L27e (InterPro:IPR001141)%3B BEST Arabidopsis thaliana protein match is: Ribosomal L27e protein family (TAIR:AT3G22230.1)%3B Has 764 Blast hits to 764 proteins in 292 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 341%3B Fungi - 149%3B Plants - 139%3B Viruses - 0%3B Other Eukaryotes - 135 (source: NCBI BLink).
AT4G14520 gene 3.82 4:08341244 Protein of unknown function homologous to the DNA-directed RNA polymerase II subunit%2C NRPB7 (At5g59180)
AT5G22260 gene MS1 3.81 5:07367635 Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen%3Bpollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors.
AT4G36690 gene ATU2AF65A 3.79 4:17293938 ATU2AF65A%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C defense response to bacterium%3B LOCATED IN: nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C U2 snRNP auxilliary factor%2C large subunit%2C splicing factor (InterPro:IPR006529)%3B BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor%2C large subunit%2C splicing factor (TAIR:AT1G60900.1)%3B Has 66106 Blast hits to 34639 proteins in 1663 species: Archae - 71%3B Bacteria - 4965%3B Metazoa - 34951%3B Fungi - 7331%3B Plants - 6616%3B Viruses - 285%3B Other Eukaryotes - 11887 (source: NCBI BLink).
AT1G20670 gene 3.78 1:07164082 DNA-binding bromodomain-containing protein%3B CONTAINS InterPro DOMAIN/s: Bromodomain%2C conserved site (InterPro:IPR018359)%2C Bromodomain (InterPro:IPR001487)%3B BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G76380.2)%3B Has 11096 Blast hits to 8233 proteins in 323 species: Archae - 0%3B Bacteria - 121%3B Metazoa - 4363%3B Fungi - 1457%3B Plants - 677%3B Viruses - 7%3B Other Eukaryotes - 4471 (source: NCBI BLink).
AT3G10525 gene LGO 3.76 3:03281306 Encodes LGO (loss of giant cells from organs) required for endoreduplication in sepal giant cell formation. Giant cells in both leaves and sepals are absent in lgo mutants. LGO is a member of a plant specific cell cycle inhibitor family SIAMESE and was originally named as SMR1(SIAMESE RELATED 1).
AT2G16940 gene 3.73 2:07342607 Splicing factor%2C CC1-like%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: mRNA processing%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Splicing factor%2C CC1-like (InterPro:IPR006509)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: Splicing factor%2C CC1-like (TAIR:AT5G09880.1)%3B Has 101521 Blast hits to 50249 proteins in 1917 species: Archae - 88%3B Bacteria - 8818%3B Metazoa - 50214%3B Fungi - 11566%3B Plants - 10292%3B Viruses - 445%3B Other Eukaryotes - 20098 (source: NCBI BLink).
AT4G15500 gene UGT84A4 3.71 4:08856962 Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.
AT4G23010 gene UTR2 3.70 4:12060131 UDP-galactose transporter 2 (UTR2)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: transmembrane transport%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657)%3B BEST Arabidopsis thaliana protein match is: UDP-N-acetylglucosamine (UAA) transporter family (TAIR:AT1G12600.1)%3B Has 1195 Blast hits to 1195 proteins in 229 species: Archae - 2%3B Bacteria - 6%3B Metazoa - 571%3B Fungi - 199%3B Plants - 234%3B Viruses - 0%3B Other Eukaryotes - 183 (source: NCBI BLink).
AT5G66740 gene 3.68 5:26646900 Protein of unknown function (DUF620)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF620) (TAIR:AT1G75160.1)%3B Has 213 Blast hits to 212 proteins in 19 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 211%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT2G43110 gene 3.68 2:17922019 unknown protein%3B Has 212 Blast hits to 211 proteins in 96 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 62%3B Fungi - 91%3B Plants - 31%3B Viruses - 0%3B Other Eukaryotes - 22 (source: NCBI BLink).
AT3G55830 gene EPC1 3.65 3:20714946 A member of the Glycosyltransferase Family 64%2C homologous to Poplar cambium-expressed GT64 gene. The EPC1 protein plays a critical role during plant development in maintaining the integrity of organs via cell-cell adhesion%2C thereby providing mechanical strength and facilitating the movement of metabolites throughout the plant.
AT4G09670 gene 3.65 4:06107112 Oxidoreductase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C binding%2C catalytic activity%3B INVOLVED IN: oxidation reduction%2C metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Oxidoreductase%2C N-terminal (InterPro:IPR000683)%2C Oxidoreductase%2C C-terminal (InterPro:IPR004104)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: Glyceraldehyde-3-phosphate dehydrogenase-like family protein (TAIR:AT1G34200.1)%3B Has 17148 Blast hits to 17147 proteins in 2160 species: Archae - 344%3B Bacteria - 12203%3B Metazoa - 250%3B Fungi - 605%3B Plants - 99%3B Viruses - 0%3B Other Eukaryotes - 3647 (source: NCBI BLink).
AT4G12080 gene AHL1 3.64 4:07239200 AT-hook motif nuclear-localized protein 1 (AHL1)%3B FUNCTIONS IN: DNA binding%3B LOCATED IN: mitochondrion%2C nucleolus%2C nucleus%2C cytoplasm%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175)%2C AT hook%2C DNA-binding motif (InterPro:IPR017956)%3B BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT4G22770.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT1G11020 gene 3.63 1:03676691 RING/FYVE/PHD zinc finger superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C Zinc finger%2C RING-CH-type (InterPro:IPR011016)%3B BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G22120.2)%3B Has 1259 Blast hits to 1258 proteins in 177 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 590%3B Fungi - 144%3B Plants - 311%3B Viruses - 11%3B Other Eukaryotes - 203 (source: NCBI BLink).
AT3G49350 gene 3.62 3:18296990 Ypt/Rab-GAP domain of gyp1p superfamily protein%3B FUNCTIONS IN: RAB GTPase activator activity%3B INVOLVED IN: regulation of Rab GTPase activity%3B LOCATED IN: intracellular%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195)%3B BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT5G24390.1)%3B Has 4289 Blast hits to 3657 proteins in 225 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2316%3B Fungi - 775%3B Plants - 693%3B Viruses - 0%3B Other Eukaryotes - 505 (source: NCBI BLink).
AT2G37710 gene RLK 3.61 2:15814531 Induced in response to Salicylic acid.
AT4G18270 gene TRANS11 3.60 4:10098673 Encodes protein similar to similar to bacterial translocase I (mra Y). Expressed during flower bud development.
AT1G74850 gene PTAC2 3.59 1:28118664 Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.
AT2G42320 gene 3.58 2:17627331 nucleolar protein gar2-related%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57780.1)%3B Has 15829 Blast hits to 1361 proteins in 222 species: Archae - 4%3B Bacteria - 14530%3B Metazoa - 601%3B Fungi - 195%3B Plants - 122%3B Viruses - 6%3B Other Eukaryotes - 371 (source: NCBI BLink).
AT4G19490 gene VPS54 3.58 4:10615696 Putative homolog of yeast Vps54. Thought to associate with POK and ATVPS53 in a plant GARP-like complex involved in the membrane trafficking system.
AT3G20660 gene OCT4 3.57 3:07225037 organic cation/carnitine transporter4 (4-Oct)%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%2C sugar:hydrogen symporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: chloroplast thylakoid membrane%2C membrane%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: pseudogene (TAIR:AT1G73220.1)%3B Has 27723 Blast hits to 27519 proteins in 2032 species: Archae - 544%3B Bacteria - 15020%3B Metazoa - 4940%3B Fungi - 4480%3B Plants - 1745%3B Viruses - 0%3B Other Eukaryotes - 994 (source: NCBI BLink).
AT5G35100 gene 3.57 5:13359502 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein%3B FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity%3B INVOLVED IN: protein folding%2C peptidyl-cysteine S-nitrosylation%3B LOCATED IN: thylakoid lumen%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891)%2C Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (InterPro:IPR002130)%3B BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT4G34960.1)%3B Has 4654 Blast hits to 4654 proteins in 798 species: Archae - 9%3B Bacteria - 741%3B Metazoa - 1669%3B Fungi - 839%3B Plants - 784%3B Viruses - 0%3B Other Eukaryotes - 612 (source: NCBI BLink).
AT4G17330 gene G2484-1 3.54 4:09688851 gene of unknown function expressed in seedlings%2C flower buds and stems
AT4G08940 gene 3.54 4:05730797 Ubiquitin carboxyl-terminal hydrolase family protein%3B CONTAINS InterPro DOMAIN/s: RNA recognition domain%2C plant (InterPro:IPR021099)%3B BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT4G01037.1)%3B Has 405 Blast hits to 399 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 405%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G12880 gene ENODL19 3.53 4:07544381 early nodulin-like protein 19 (ENODL19)%3B FUNCTIONS IN: electron carrier activity%2C copper ion binding%3B LOCATED IN: apoplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245)%2C Cupredoxin (InterPro:IPR008972)%3B BEST Arabidopsis thaliana protein match is: early nodulin-like protein 17 (TAIR:AT5G15350.1)%3B Has 1342 Blast hits to 1299 proteins in 61 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1342%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G20510 gene OPCL1 3.52 1:07103362 OPC-8:0 CoA ligase1 (OPCL1)%3B FUNCTIONS IN: 4-coumarate-CoA ligase activity%3B INVOLVED IN: phenylpropanoid metabolic process%2C jasmonic acid biosynthetic process%2C response to wounding%3B LOCATED IN: peroxisome%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: AMP-binding%2C conserved site (InterPro:IPR020845)%2C AMP-dependent synthetase/ligase (InterPro:IPR000873)%3B BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1)%3B Has 85702 Blast hits to 78184 proteins in 3819 species: Archae - 1213%3B Bacteria - 55131%3B Metazoa - 3605%3B Fungi - 4761%3B Plants - 2762%3B Viruses - 1%3B Other Eukaryotes - 18229 (source: NCBI BLink).
AT1G07720 gene KCS3 3.51 1:02390531 Encodes KCS3%2C a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
AT3G48360 gene BT2 3.48 3:17907767 encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development. BT2 also mediates multiple responses to nutrients%2C stresses%2C and hormones.
AT4G26220 gene 3.48 4:13283526 Encodes a caffeoyl-coenzyme A O-methyltransferase (CCoAOMT)-like protein with a strong preference for methylating the para position of flavanones and dihydroflavonols%2C whereas flavones and flavonols are methylated in the meta-position.
AT1G14790 gene RDR1 3.47 1:05093961 Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS)%2C it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie%2C et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs.
AT3G09010 gene 3.47 3:02749908 Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G16670.1)%3B Has 118495 Blast hits to 117144 proteins in 4669 species: Archae - 109%3B Bacteria - 13491%3B Metazoa - 44039%3B Fungi - 9996%3B Plants - 33355%3B Viruses - 385%3B Other Eukaryotes - 17120 (source: NCBI BLink).
AT5G59870 gene HTA6 3.46 5:24115354 Encodes HTA6%2C a histone H2A protein.
AT4G26960 gene 3.44 4:13538669 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54970.1)%3B Has 22 Blast hits to 22 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 22%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G14230 gene 3.44 4:08200334 FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550)%2C Cystathionine beta-synthase%2C core (InterPro:IPR000644)%3B BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT4G14240.1)%3B Has 10651 Blast hits to 10438 proteins in 2476 species: Archae - 104%3B Bacteria - 7995%3B Metazoa - 296%3B Fungi - 275%3B Plants - 231%3B Viruses - 0%3B Other Eukaryotes - 1750 (source: NCBI BLink).
AT1G65710 gene 3.43 1:24436901 unknown protein%3B INVOLVED IN: N-terminal protein myristoylation%3B EXPRESSED IN: cultured cell%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37010.1)%3B Has 2241 Blast hits to 1776 proteins in 164 species: Archae - 0%3B Bacteria - 29%3B Metazoa - 1759%3B Fungi - 94%3B Plants - 93%3B Viruses - 17%3B Other Eukaryotes - 249 (source: NCBI BLink).
AT4G14010 gene RALFL32 3.43 4:08092687 Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF)%2C and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
AT3G63420 gene GG1 3.42 3:23417249 heterotrimeric G protein gamma-subunit (AGG1) mRNA%2C
AT1G23000 gene 3.42 1:08143227 Heavy metal transport/detoxification superfamily protein %3B FUNCTIONS IN: metal ion binding%3B INVOLVED IN: metal ion transport%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121)%3B BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT3G06130.1)%3B Has 2286 Blast hits to 2008 proteins in 133 species: Archae - 0%3B Bacteria - 60%3B Metazoa - 111%3B Fungi - 41%3B Plants - 1285%3B Viruses - 0%3B Other Eukaryotes - 789 (source: NCBI BLink).
AT1G78580 gene TPS1 3.41 1:29552340 Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain but no trehalose phosphatase (TPP)-like domain. ATTPS1 is able to complement yeast tps1 mutants in vivo. The gene product modulates cell growth but not cell differentiation by determining cell wall deposition and cell division.
AT4G14190 gene 3.40 4:08183227 Pentatricopeptide repeat (PPR) superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G42630.1)%3B Has 17113 Blast hits to 6259 proteins in 178 species: Archae - 1%3B Bacteria - 6%3B Metazoa - 71%3B Fungi - 33%3B Plants - 16698%3B Viruses - 0%3B Other Eukaryotes - 304 (source: NCBI BLink).
AT5G38610 gene 3.39 5:15460691 Plant invertase/pectin methylesterase inhibitor superfamily protein%3B FUNCTIONS IN: enzyme inhibitor activity%2C pectinesterase inhibitor activity%2C pectinesterase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501)%3B BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT5G46940.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT2G34490 gene CYP710A2 3.38 2:14535506 Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze the conversion of both 24-%3Ci%3Eepi%3C/i%3E-campesterol and %26beta%3B-sitosterol to brassicasterol and stigmasterol%2C respectively%2C in the presence of NADPH.
AT5G56660 gene ILL2 3.38 5:22933267 encodes IAA-amino acid hydrolase that has a broad range of substrate specificity. It is most active on IAA-Ala among the IAA-conjugate hydrolases tested.
AT1G05700 gene 3.37 1:01709673 Leucine-rich repeat transmembrane protein kinase protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: shoot%2C stem%2C hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase protein (TAIR:AT4G29990.1)%3B Has 163331 Blast hits to 124125 proteins in 4749 species: Archae - 121%3B Bacteria - 14440%3B Metazoa - 44652%3B Fungi - 9862%3B Plants - 74464%3B Viruses - 498%3B Other Eukaryotes - 19294 (source: NCBI BLink).
AT5G66750 gene CHR1 3.36 5:26648897 Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants%2C and can cause several phenotypic abnormalities%2C but some loci%2C such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations%2C leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1 shows some resistance to agrobacterium-mediated root transformation.
AT4G18180 gene 3.36 4:10065291 Pectin lyase-like superfamily protein%3B FUNCTIONS IN: polygalacturonase activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Pectin lyase fold (InterPro:IPR012334)%2C Glycoside hydrolase%2C family 28 (InterPro:IPR000743)%2C Parallel beta-helix repeat (InterPro:IPR006626)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G07840.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT4G16745 gene 3.36 4:09411823 Exostosin family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: membrane%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263)%3B BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G19670.1)%3B Has 1386 Blast hits to 1374 proteins in 112 species: Archae - 0%3B Bacteria - 12%3B Metazoa - 318%3B Fungi - 4%3B Plants - 948%3B Viruses - 0%3B Other Eukaryotes - 104 (source: NCBI BLink).
AT1G11470 gene 3.35 1:03859662 Pentatricopeptide repeat (PPR) superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G02370.1)%3B Has 31 Blast hits to 31 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 31%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G53880 gene AKR4C11 3.33 3:19953117 NAD(P)-linked oxidoreductase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%3B INVOLVED IN: response to cadmium ion%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395)%2C Aldo/keto reductase subgroup (InterPro:IPR020471)%2C Aldo/keto reductase%2C conserved site (InterPro:IPR018170)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT2G37770.2)%3B Has 24440 Blast hits to 24411 proteins in 2487 species: Archae - 380%3B Bacteria - 16102%3B Metazoa - 2117%3B Fungi - 1777%3B Plants - 1502%3B Viruses - 0%3B Other Eukaryotes - 2562 (source: NCBI BLink).
AT3G07800 gene TK1a 3.32 3:02489387 Encodes a thymidine kinase that salvages DNA precursors.
AT4G19150 gene 3.32 4:10471331 Ankyrin repeat family protein%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683)%2C Ankyrin repeat (InterPro:IPR002110)%3B BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT2G03430.1)%3B Has 81213 Blast hits to 28344 proteins in 1181 species: Archae - 93%3B Bacteria - 6443%3B Metazoa - 41453%3B Fungi - 7183%3B Plants - 4369%3B Viruses - 872%3B Other Eukaryotes - 20800 (source: NCBI BLink).
AT5G57910 gene 3.32 5:23451066 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30630.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT3G18680 gene 3.31 3:06427403 Amino acid kinase family protein%3B FUNCTIONS IN: uridylate kinase activity%2C UMP kinase activity%3B INVOLVED IN: cellular amino acid biosynthetic process%2C pyrimidine nucleotide biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aspartate/glutamate/uridylate kinase (InterPro:IPR001048)%2C Uridylate kinase%2C bacteria (InterPro:IPR015963)%3B BEST Arabidopsis thaliana protein match is: aspartate/glutamate/uridylate kinase family protein (TAIR:AT3G10030.1)%3B Has 10647 Blast hits to 10647 proteins in 2814 species: Archae - 356%3B Bacteria - 8071%3B Metazoa - 2%3B Fungi - 40%3B Plants - 182%3B Viruses - 0%3B Other Eukaryotes - 1996 (source: NCBI BLink).
AT5G38630 gene CYB-1 3.28 5:15465992 Encodes for cytochrome b561.
AT5G19080 gene LUL3 3.28 5:06378149 Paralog of LOG2 (At3g09770)%2C a ubiquitin ligase that regulates amino acid export.
AT5G41370 gene XPB1 3.26 5:16551119 Encodes XPB1%2C a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2%2C with high similarity to each other). XPB proteins are involved in both DNA repair and transcription%2C they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle%2C Northern blot analyses suggest that light modulates the expression level of both XPB copies.
AT5G39370 gene 3.26 5:15757717 Curculin-like (mannose-binding) lectin family protein%3B FUNCTIONS IN: sugar binding%3B INVOLVED IN: biological_process unknown%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%3B BEST Arabidopsis thaliana protein match is: receptor kinase 2 (TAIR:AT1G65800.1)%3B Has 2365 Blast hits to 2316 proteins in 78 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2365%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G65780 gene 3.26 1:24462958 P-loop containing nucleoside triphosphate hydrolases superfamily protein%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G65810.1)%3B Has 5699 Blast hits to 4991 proteins in 919 species: Archae - 198%3B Bacteria - 1488%3B Metazoa - 1292%3B Fungi - 1154%3B Plants - 656%3B Viruses - 49%3B Other Eukaryotes - 862 (source: NCBI BLink).
AT2G32380 gene 3.26 2:13746566 Transmembrane protein 97%2C predicted%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Transmembrane protein 97%2C predicted (InterPro:IPR016964)%3B BEST Arabidopsis thaliana protein match is: Transmembrane protein 97%2C predicted (TAIR:AT1G05210.1)%3B Has 585 Blast hits to 585 proteins in 19 species: Archae - 0%3B Bacteria - 1%3B Metazoa - 0%3B Fungi - 0%3B Plants - 558%3B Viruses - 0%3B Other Eukaryotes - 26 (source: NCBI BLink).
AT4G13820 gene 3.25 4:08007950 Leucine-rich repeat (LRR) family protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: signal transduction%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: stem%2C leaf whorl%2C hypocotyl%2C root%2C leaf%3B EXPRESSED DURING: LP.06 six leaves visible%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: receptor like protein 47 (TAIR:AT4G13810.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT3G01720 gene 3.25 3:00262142 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1)%3B Has 374 Blast hits to 211 proteins in 23 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 316%3B Viruses - 0%3B Other Eukaryotes - 58 (source: NCBI BLink).
AT5G61790 gene CNX1 3.24 5:24827063 calnexin 1 (CNX1)%3B FUNCTIONS IN: unfolded protein binding%2C calcium ion binding%3B INVOLVED IN: protein folding%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin%2C P (InterPro:IPR009033)%2C Calreticulin/calnexin (InterPro:IPR001580)%2C Calreticulin/calnexin%2C conserved site (InterPro:IPR018124)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%2C Concanavalin A-like lectin/glucanase%2C subgroup (InterPro:IPR013320)%3B BEST Arabidopsis thaliana protein match is: Calreticulin family protein (TAIR:AT5G07340.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT3G25882 gene NIMIN-2 3.24 3:09470357 encodes a kinase that physically interacts with NPR1/NIM1
AT4G10050 gene 3.23 4:06284308 esterase/lipase/thioesterase family protein%3B FUNCTIONS IN: hydrolase activity%3B LOCATED IN: vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073)%2C Protein phosphatase methylesterase%2C eukaryotic (InterPro:IPR016812)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G04330 gene RbcX1 3.23 4:02116553 Encodes a chloroplast thylakoid localized RbcX protein that acts as a chaperone in the folding of Rubisco.
AT1G73810 gene 3.23 1:27752342 Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein%3B CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141)%3B BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein (TAIR:AT1G68390.1)%3B Has 580 Blast hits to 580 proteins in 21 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 0%3B Fungi - 0%3B Plants - 553%3B Viruses - 0%3B Other Eukaryotes - 22 (source: NCBI BLink).
AT4G10910 gene 3.22 4:06696712 unknown protein%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G12640 gene 3.20 4:07462532 RNA recognition motif (RRM)-containing protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC%2C C-terminal (InterPro:IPR012921)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT2G43410.4)%3B Has 8554 Blast hits to 7148 proteins in 405 species: Archae - 8%3B Bacteria - 199%3B Metazoa - 4614%3B Fungi - 1472%3B Plants - 1436%3B Viruses - 0%3B Other Eukaryotes - 825 (source: NCBI BLink).
AT2G40580 gene 3.19 2:16943864 Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G40560.1)%3B Has 67471 Blast hits to 66791 proteins in 2860 species: Archae - 103%3B Bacteria - 6809%3B Metazoa - 27953%3B Fungi - 8894%3B Plants - 10477%3B Viruses - 285%3B Other Eukaryotes - 12950 (source: NCBI BLink).
AT1G22290 gene 3.19 1:07876640 14-3-3 family protein%3B CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308)%3B BEST Arabidopsis thaliana protein match is: general regulatory factor 10 (TAIR:AT1G22300.2)%3B Has 2461 Blast hits to 2459 proteins in 362 species: Archae - 2%3B Bacteria - 2%3B Metazoa - 1174%3B Fungi - 281%3B Plants - 702%3B Viruses - 0%3B Other Eukaryotes - 300 (source: NCBI BLink).
AT4G34540 gene 3.18 4:16498391 encodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine.
AT5G35580 gene 3.16 5:13761823 Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: root%2C stamen%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G05940.1)%3B Has 116021 Blast hits to 114684 proteins in 3463 species: Archae - 93%3B Bacteria - 13781%3B Metazoa - 42325%3B Fungi - 9577%3B Plants - 32686%3B Viruses - 372%3B Other Eukaryotes - 17187 (source: NCBI BLink).
AT2G36830 gene GAMMA-TIP 3.16 2:15445294 Encodes a tonoplast intrinsic protein%2C which functions as water channel. It has also been shown to be able to facilitate the transport of urea and hydrogen peroxide. Highly expressed in vascular tissues of the root%2C stem%2C cauline leaves and flowers but not in the apical meristems.
AT3G42060 gene 3.16 3:14251600 myosin heavy chain-related%3B BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT2G15420.1)%3B Has 60 Blast hits to 60 proteins in 5 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 1%3B Plants - 59%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G11980 gene NUDX14 3.15 4:07183650 nudix hydrolase homolog 14 (NUDX14)%3B FUNCTIONS IN: hydrolase activity%2C ADP-sugar diphosphatase activity%2C ADP-ribose pyrophosphohydrolase activity%2C ADP-glucose pyrophosphohydrolase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797)%2C NUDIX hydrolase domain (InterPro:IPR000086)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G38530 gene TSBtype2 3.14 5:15423980 TSBtype2 encodes a type 2 tryptophan synthase beta subunit that catalyzes a condensation reaction between serine and indole to generate tryptophan.It appears to form a homodimer. Its biological role has not yet been determined%2C but it has a very high affinity for indole which may be involved in allowing TSBtype2 to carefully limit free indole build-up. But%2C to date no overall change in plant morphology or seedling root growth have been observed in tsbtype2 mutants%2C indicating that this gene is not essential under optimum conditions. n most organs%2C TSBtype2 is transcripts are expressed at a lower level than TSB1 but in dry seeds they are expressed at comparable levels.
AT2G14870 gene 3.13 2:06391172 RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G12190.1)%3B Has 494 Blast hits to 494 proteins in 198 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 198%3B Fungi - 117%3B Plants - 81%3B Viruses - 0%3B Other Eukaryotes - 94 (source: NCBI BLink).
AT5G40942 gene RNR2B 3.13 5:16408166 pseudogene of ribonucleoside-diphosphate reductase small chain/ ribonucleotide reductase [Source:TAIR;Acc:AT5G40942]
AT2G38500 gene 3.12 2:16117395 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B Has 51 Blast hits to 51 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 51%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT5G33330 gene 3.12 5:12591683 Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein%3B FUNCTIONS IN: ribonuclease H activity%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%2C Ribonuclease H (InterPro:IPR002156)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1)%3B Has 45 Blast hits to 45 proteins in 4 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 45%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G30470 gene 3.11 1:10779111 SIT4 phosphatase-associated family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: guard cell%2C cultured cell%3B CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587)%3B BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT3G45190.1)%3B Has 14427 Blast hits to 7672 proteins in 774 species: Archae - 138%3B Bacteria - 5542%3B Metazoa - 3700%3B Fungi - 2195%3B Plants - 440%3B Viruses - 108%3B Other Eukaryotes - 2304 (source: NCBI BLink).
AT1G09630 gene RAB11c 3.10 1:03118155 Encodes a putative GTP-binding protein. Associates with organelles on a pathway from the Golgi to the plasma membrane in interphase. In dividing cells acts at the cell plate.
AT5G27330 gene 3.10 5:09632703 Prefoldin chaperone subunit family protein%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05130.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G37850 gene SOS4 3.09 5:15065300 Encodes a pyridoxal kinase required for root hair development. Mutants are hypersensitive to Na+%2C K+ and Li+.
AT5G51150 gene 3.09 5:20788913 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein%3B FUNCTIONS IN: protein transporter activity%3B INVOLVED IN: protein transport%3B LOCATED IN: mitochondrial inner membrane%2C chloroplast%3B CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex%2C subunit Tim17/22 (InterPro:IPR003397)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34630.1)%3B Has 522 Blast hits to 429 proteins in 135 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 235%3B Fungi - 150%3B Plants - 73%3B Viruses - 0%3B Other Eukaryotes - 64 (source: NCBI BLink).
GO domain Definition P-value
tryptophan catabolic process biological_process "The chemical reactions and pathways resulting in the breakdown of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid." [ISBN:0198547684] 4.40e-02