Interaction network for MSAT4.18
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Trait (count=203) Type Name LOD score Position Description
AT4G20480 gene 115.03 4:11033849 Putative endonuclease or glycosyl hydrolase%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06810.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G20820 gene 75.03 4:11150049 FAD-binding Berberine family protein%3B FUNCTIONS IN: electron carrier activity%2C oxidoreductase activity%2C FAD binding%2C catalytic activity%3B INVOLVED IN: oxidation reduction%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C LP.08 eight leaves visible%3B CONTAINS InterPro DOMAIN/s: FAD-binding%2C type 2 (InterPro:IPR016166)%2C Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093)%2C Berberine/berberine-like (InterPro:IPR012951)%2C FAD linked oxidase%2C N-terminal (InterPro:IPR006094)%3B BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT5G44440.1)%3B Has 4739 Blast hits to 4596 proteins in 725 species: Archae - 60%3B Bacteria - 2023%3B Metazoa - 34%3B Fungi - 1711%3B Plants - 692%3B Viruses - 0%3B Other Eukaryotes - 219 (source: NCBI BLink).
AT4G20850 gene TPP2 74.94 4:11160721 Tripeptidyl Peptidase II. Ser protease that assembles into a large oligomeric complex containing two proteins of 153 and 142 kD that are derived from a single TPP2 gene%2C with the smaller version missing part of the C-terminal end. Not essential%2C based on the lack of phenotype of a T-DNA disruption mutant.
AT4G20210 gene 72.16 4:10913470 Terpenoid cyclases/Protein prenyltransferases superfamily protein%3B FUNCTIONS IN: lyase activity%2C magnesium ion binding%3B INVOLVED IN: metabolic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Terpene synthase%2C metal-binding domain (InterPro:IPR005630)%2C Terpenoid synthase (InterPro:IPR008949)%2C Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930)%2C Terpene synthase-like (InterPro:IPR001906)%3B BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT4G20200.1)%3B Has 1635 Blast hits to 1609 proteins in 176 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1631%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).
AT4G19010 gene 62.28 4:10411466 Encodes for a 4-coumarate-CoA ligase involved in the biosynthesis of the benzenoid ring of ubiquinone from phenylalanine.
AT4G20930 gene 60.24 4:11198251 6-phosphogluconate dehydrogenase family protein%3B FUNCTIONS IN: in 7 functions%3B INVOLVED IN: oxidation reduction%2C pentose-phosphate shunt%2C valine metabolic process%2C valine catabolic process%2C metabolic process%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase%2C NAD-binding (InterPro:IPR006115)%2C 6-phosphogluconate dehydrogenase%2C C-terminal-like (InterPro:IPR008927)%2C Dehydrogenase%2C multihelical (InterPro:IPR013328)%2C 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C 3-hydroxyisobutyrate dehydrogenase (InterPro:IPR011548)%2C 3-hydroxyisobutyrate dehydrogenase-related%2C conserved site (InterPro:IPR002204)%3B BEST Arabidopsis thaliana protein match is: glyoxylate reductase 2 (TAIR:AT1G17650.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G20830 gene 59.85 4:11155453 FAD-binding Berberine family protein%3B FUNCTIONS IN: electron carrier activity%2C oxidoreductase activity%2C FAD binding%2C catalytic activity%3B INVOLVED IN: response to oxidative stress%3B LOCATED IN: mitochondrion%2C apoplast%2C plasma membrane%2C vacuole%2C plant-type cell wall%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: FAD-binding%2C type 2 (InterPro:IPR016166)%2C Berberine/berberine-like (InterPro:IPR012951)%2C FAD linked oxidase%2C N-terminal (InterPro:IPR006094)%3B BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT4G20840.1)%3B Has 4327 Blast hits to 4201 proteins in 643 species: Archae - 38%3B Bacteria - 1800%3B Metazoa - 2%3B Fungi - 1615%3B Plants - 732%3B Viruses - 0%3B Other Eukaryotes - 140 (source: NCBI BLink).
AT4G21380 gene RK3 59.52 4:11388827 encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds%2C and pedicels.
AT4G21810 gene DER2.1 58.93 4:11575096 DERLIN-2.1 (DER2.1)%3B CONTAINS InterPro DOMAIN/s: Der1-like (InterPro:IPR007599)%3B BEST Arabidopsis thaliana protein match is: DERLIN-2.2 (TAIR:AT4G04860.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT1G71920 gene HISN6B 52.34 1:27066948 Encodes a protein that is believed to act as a histidinol-phosphate transaminase involved in histidine biosynthesis. If the gene encoding the other protein shown to have this function%2C HISN6A (AT5G10330)%2C is disrupted%2C a residual level of histidine biosynthesis continues%2C suggesting that HISN6B can somewhat compensate for the loss of HISN6A.
AT4G19830 gene 49.30 4:10772335 FKBP-like peptidyl-prolyl cis-trans isomerase family protein%3B FUNCTIONS IN: FK506 binding%2C peptidyl-prolyl cis-trans isomerase activity%3B INVOLVED IN: protein folding%3B LOCATED IN: chloroplast thylakoid lumen%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (InterPro:IPR001179)%3B BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT4G26555.1)%3B Has 5413 Blast hits to 5325 proteins in 1280 species: Archae - 56%3B Bacteria - 2447%3B Metazoa - 955%3B Fungi - 366%3B Plants - 719%3B Viruses - 0%3B Other Eukaryotes - 870 (source: NCBI BLink).
AT4G20030 gene 44.97 4:10846286 RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G20930.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G20330 gene 39.91 4:10982517 Transcription initiation factor TFIIE%2C beta subunit%3B FUNCTIONS IN: RNA polymerase II transcription factor activity%3B INVOLVED IN: transcription initiation from RNA polymerase II promoter%3B LOCATED IN: transcription factor TFIIE complex%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIIE%2C beta subunit (InterPro:IPR016656)%2C Transcription factor TFIIE beta subunit%2C DNA-binding domain (InterPro:IPR003166)%3B BEST Arabidopsis thaliana protein match is: Transcription initiation factor TFIIE%2C beta subunit (TAIR:AT4G21010.1)%3B Has 316 Blast hits to 316 proteins in 142 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 124%3B Fungi - 101%3B Plants - 70%3B Viruses - 0%3B Other Eukaryotes - 21 (source: NCBI BLink).
AT4G21400 gene CRK28 33.54 4:11398857 Encodes a cysteine-rich receptor-like protein kinase.
AT4G19840 gene PP2-A1 31.52 4:10773804 encodes a phloem lectin%2C similar to phloem lectin in cucumber and celery. Gene is expressed in the phloem%2C predominantly in the companion cells.
AT4G19500 gene 29.69 4:10625562 nucleoside-triphosphatases%3Btransmembrane receptors%3Bnucleotide binding%3BATP binding%3B FUNCTIONS IN: transmembrane receptor activity%2C nucleoside-triphosphatase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: signal transduction%2C defense response%2C apoptosis%2C innate immune response%3B LOCATED IN: intrinsic to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%2C Toll-Interleukin receptor (InterPro:IPR000157)%2C Protein of unknown function DUF640 (InterPro:IPR006936)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16950.2)%3B Has 20045 Blast hits to 11477 proteins in 434 species: Archae - 7%3B Bacteria - 464%3B Metazoa - 257%3B Fungi - 40%3B Plants - 18821%3B Viruses - 4%3B Other Eukaryotes - 452 (source: NCBI BLink).
AT4G21390 gene B120 28.20 4:11394295 B120%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C sugar binding%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C PAN-2 domain (InterPro:IPR013227)%2C Apple-like (InterPro:IPR003609)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61610.1)%3B Has 119638 Blast hits to 117946 proteins in 4361 species: Archae - 104%3B Bacteria - 13356%3B Metazoa - 43759%3B Fungi - 9937%3B Plants - 34742%3B Viruses - 415%3B Other Eukaryotes - 17325 (source: NCBI BLink).
AT4G21800 gene QQT2 27.30 4:11572789 Encodes QQT2. Required for early embryo development. qqt1 mutant lines are embryo-defective. Participates in the organization of microtubules during cell division. Interacts with QQT1 (encoded by AT5G22370).
AT4G21760 gene BGLU47 24.45 4:11561123 beta-glucosidase 47 (BGLU47)%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 1 (InterPro:IPR001360)%2C Glycoside hydrolase%2C family 1%2C active site (InterPro:IPR018120)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: beta-glucosidase 45 (TAIR:AT1G61810.1)%3B Has 11354 Blast hits to 11023 proteins in 1477 species: Archae - 142%3B Bacteria - 7853%3B Metazoa - 716%3B Fungi - 199%3B Plants - 1433%3B Viruses - 0%3B Other Eukaryotes - 1011 (source: NCBI BLink).
AT4G19070 gene 23.89 4:10446340 Putative membrane lipoprotein%3B Has 124 Blast hits to 75 proteins in 28 species: Archae - 2%3B Bacteria - 7%3B Metazoa - 8%3B Fungi - 0%3B Plants - 50%3B Viruses - 47%3B Other Eukaryotes - 10 (source: NCBI BLink).
AT4G20840 gene 23.63 4:11157916 FAD-binding Berberine family protein%3B FUNCTIONS IN: electron carrier activity%2C oxidoreductase activity%2C FAD binding%2C catalytic activity%3B LOCATED IN: apoplast%2C plasma membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: FAD-binding%2C type 2 (InterPro:IPR016166)%2C Berberine/berberine-like (InterPro:IPR012951)%2C FAD linked oxidase%2C N-terminal (InterPro:IPR006094)%3B BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT4G20830.2)%3B Has 4588 Blast hits to 4445 proteins in 696 species: Archae - 38%3B Bacteria - 1910%3B Metazoa - 4%3B Fungi - 1681%3B Plants - 781%3B Viruses - 0%3B Other Eukaryotes - 174 (source: NCBI BLink).
AT4G21230 gene CRK27 20.57 4:11319139 Encodes a cysteine-rich receptor-like protein kinase.
AT4G19350 gene EMB3006 19.92 4:10561950 embryo defective 3006 (EMB3006)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G21720 gene 19.69 4:11542430 unknown protein%3B Has 2692 Blast hits to 975 proteins in 186 species: Archae - 4%3B Bacteria - 460%3B Metazoa - 658%3B Fungi - 93%3B Plants - 1089%3B Viruses - 100%3B Other Eukaryotes - 288 (source: NCBI BLink).
AT5G51990 gene CBF4 17.90 5:21116877 encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF4). The protein contains one AP2 domain. There are six members in this subfamily%2C including CBF1%2C CBF2%2C and CBF3. This gene is involved in response to drought stress and abscisic acid treatment%2C but not to low temperature.
AT4G19370 gene 17.78 4:10566068 Protein of unknown function (DUF1218)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT1G31720.1)%3B Has 77 Blast hits to 77 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G20880 gene 17.32 4:11178992 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2)%3B BEST Arabidopsis thaliana protein match is: ethylene-responsive nuclear protein -related (TAIR:AT5G44350.1)%3B Has 2205 Blast hits to 1471 proteins in 187 species: Archae - 2%3B Bacteria - 107%3B Metazoa - 617%3B Fungi - 120%3B Plants - 79%3B Viruses - 12%3B Other Eukaryotes - 1268 (source: NCBI BLink).
AT4G21410 gene CRK29 16.97 4:11401711 Encodes a cysteine-rich receptor-like protein kinase.
AT4G21750 gene ATML1 15.68 4:11555039 Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost%2C epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2%2C another L1-specific gene%2C suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development.
AT4G21480 gene STP12 15.61 4:11433303 Putative sugar transporter. Expressed in nematode-induced root syncytia.
AT4G18700 gene CIPK12 15.50 4:10288798 Encodes CBL-interacting protein kinase 12 (CIPK12).
AT4G21830 gene MSRB7 15.20 4:11584346 methionine sulfoxide reductase B7 (MSRB7)%3B CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579)%2C Mss4-like (InterPro:IPR011057)%3B BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase B8 (TAIR:AT4G21840.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G19520 gene 14.10 4:10639269 disease resistance protein (TIR-NBS-LRR class) family%3B FUNCTIONS IN: transmembrane receptor activity%2C ATP binding%3B INVOLVED IN: signal transduction%2C apoptosis%2C defense response%2C innate immune response%3B LOCATED IN: intrinsic to membrane%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Disease resistance protein (InterPro:IPR000767)%2C Toll-Interleukin receptor (InterPro:IPR000157)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G51560.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G20000 gene 13.65 4:10838310 VQ motif-containing protein%3B CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889)%3B Has 92 Blast hits to 92 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 92%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G18640 gene MRH1 12.98 4:10259600 Required for root hair elongation during tip growth.
AT4G20230 gene 11.89 4:10924100 Terpenoid cyclases/Protein prenyltransferases superfamily protein%3B FUNCTIONS IN: lyase activity%2C magnesium ion binding%3B INVOLVED IN: metabolic process%3B EXPRESSED IN: hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: Terpene synthase%2C metal-binding domain (InterPro:IPR005630)%2C Terpenoid synthase (InterPro:IPR008949)%2C Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930)%2C Terpene synthase-like (InterPro:IPR001906)%3B BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT4G20200.1)%3B Has 1640 Blast hits to 1613 proteins in 178 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 3%3B Plants - 1633%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).
AT4G21150 gene HAP6 11.81 4:11278403 HAPLESS 6 (HAP6)%3B FUNCTIONS IN: dolichyl-diphosphooligosaccharide-protein glycotransferase activity%3B INVOLVED IN: response to cold%2C protein amino acid terminal N-glycosylation%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribophorin II (InterPro:IPR008814)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G21470 gene FMN/FHY 11.48 4:11431104 Bifunctional enzyme that catalyzes hydrolysis of FMN to riboflavin%2C and phosphorylation of riboflavin to FMN.
AT4G20110 gene VSR7 11.42 4:10875233 VACUOLAR SORTING RECEPTOR 7 (VSR7)%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: intracellular protein transport%2C N-terminal protein myristoylation%2C protein targeting to vacuole%3B LOCATED IN: trans-Golgi network%2C integral to plasma membrane%2C Golgi transport complex%2C membrane%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C EGF-like calcium-binding%2C conserved site (InterPro:IPR018097)%2C Growth factor%2C receptor (InterPro:IPR009030)%3B BEST Arabidopsis thaliana protein match is: VACUOLAR SORTING RECEPTOR 6 (TAIR:AT1G30900.1)%3B Has 14212 Blast hits to 6790 proteins in 278 species: Archae - 2%3B Bacteria - 151%3B Metazoa - 12853%3B Fungi - 13%3B Plants - 489%3B Viruses - 0%3B Other Eukaryotes - 704 (source: NCBI BLink).
AT4G20360 gene RABE1b 11.04 4:10989910 RAB GTPase homolog E1B (RABE1b)%3B FUNCTIONS IN: GTP binding%2C translation elongation factor activity%2C GTPase activity%3B INVOLVED IN: peptidyl-cysteine S-nitrosylation%3B LOCATED IN: in 9 components%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A%2C bacterial/organelle (InterPro:IPR004541)%2C Translation elongation factor EFTu/EF1A%2C C-terminal (InterPro:IPR004160)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (InterPro:IPR009001)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%3B BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT4G02930.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT4G20260 gene PCAP1 10.99 4:10940414 Encodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3%2C5-bisphosphate (PtdIns(3%2C5)P2) and PtdIns (3%2C4%2C5)P3%2C and weakly with PtdIns(3%2C5)P2 and PtdIns(4%2C5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol%2C sorbitol%2C and the flg22 oligopeptide also increase expression levels.
AT4G16470 gene 10.59 4:09287499 Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1)%3B Has 33210 Blast hits to 13021 proteins in 214 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 30%3B Fungi - 34%3B Plants - 32761%3B Viruses - 0%3B Other Eukaryotes - 385 (source: NCBI BLink).
AT4G19380 gene 10.54 4:10568323 Long-chain fatty alcohol dehydrogenase family protein%3B FUNCTIONS IN: electron carrier activity%2C oxidoreductase activity%2C acting on CH-OH group of donors%2C FAD binding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase%2C N-terminal (InterPro:IPR000172)%2C Glucose-methanol-choline oxidoreductase%2C C-terminal (InterPro:IPR007867)%2C Long-chain fatty alcohol dehydrogenase (InterPro:IPR012400)%3B BEST Arabidopsis thaliana protein match is: Long-chain fatty alcohol dehydrogenase family protein (TAIR:AT4G28570.1)%3B Has 4189 Blast hits to 4124 proteins in 819 species: Archae - 35%3B Bacteria - 2697%3B Metazoa - 100%3B Fungi - 264%3B Plants - 164%3B Viruses - 0%3B Other Eukaryotes - 929 (source: NCBI BLink).
AT4G18740 gene 10.51 4:10303343 Rho termination factor%3B FUNCTIONS IN: transcription termination factor activity%3B INVOLVED IN: transcription termination%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Rho termination factor%2C N-terminal (InterPro:IPR011112)%3B Has 186 Blast hits to 184 proteins in 65 species: Archae - 0%3B Bacteria - 29%3B Metazoa - 45%3B Fungi - 8%3B Plants - 65%3B Viruses - 9%3B Other Eukaryotes - 30 (source: NCBI BLink).
AT4G18960 gene AG 10.27 4:10382856 Floral homeotic gene encoding a MADS domain transcription factor. Specifies floral meristem and carpel and stamen identity. Binds CArG box sequences. It is the only C function gene. It interacts genetically with the other homeotic genes to specify the floral organs.
AT4G21650 gene 9.78 4:11501162 Subtilase family protein%3B FUNCTIONS IN: identical protein binding%2C serine-type endopeptidase activity%3B INVOLVED IN: proteolysis%2C negative regulation of catalytic activity%3B LOCATED IN: plant-type cell wall%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C Proteinase inhibitor%2C propeptide (InterPro:IPR009020)%2C Peptidase S8/S53%2C subtilisin/kexin/sedolisin (InterPro:IPR000209)%2C Peptidase S8%2C subtilisin-related (InterPro:IPR015500)%2C Peptidase S8/S53%2C subtilisin%2C active site (InterPro:IPR022398)%2C Proteinase inhibitor I9%2C subtilisin propeptide (InterPro:IPR010259)%3B BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT4G21630.1)%3B Has 7770 Blast hits to 6733 proteins in 1165 species: Archae - 228%3B Bacteria - 4634%3B Metazoa - 31%3B Fungi - 250%3B Plants - 1972%3B Viruses - 0%3B Other Eukaryotes - 655 (source: NCBI BLink).
AT4G20460 gene 9.71 4:11029736 NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: coenzyme binding%2C UDP-glucose 4-epimerase activity%2C binding%2C catalytic activity%3B INVOLVED IN: galactose metabolic process%2C cellular metabolic process%2C nucleotide-sugar metabolic process%2C metabolic process%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C UDP-glucose 4-epimerase (InterPro:IPR005886)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G30620.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT4G19985 gene 9.65 4:10830232 Acyl-CoA N-acyltransferases (NAT) superfamily protein%3B FUNCTIONS IN: N-acetyltransferase activity%3B INVOLVED IN: N-terminal protein myristoylation%2C metabolic process%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase%2C C-terminal (InterPro:IPR022610)%2C GCN5-related N-acetyltransferase (InterPro:IPR000182)%2C Acyl-CoA N-acyltransferase (InterPro:IPR016181)%3B BEST Arabidopsis thaliana protein match is: nuclear shuttle interacting (TAIR:AT1G32070.3)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G21140 gene 9.63 4:11277185 BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G05400.2)%3B Has 41 Blast hits to 41 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 40%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
AT4G21450 gene 9.62 4:11425933 PapD-like superfamily protein%3B FUNCTIONS IN: structural molecule activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962)%2C Major sperm protein (InterPro:IPR000535)%3B BEST Arabidopsis thaliana protein match is: PapD-like superfamily protein (TAIR:AT4G05060.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G20120 gene None 9.38 None: None
AT4G21950 gene 9.15 4:11644122 unknown protein%3B Has 2 Blast hits to 2 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G23400 gene PIP1%3B5 9.08 4:12220641 plasma membrane intrinsic protein 1%3B5 (PIP1%3B5)%3B FUNCTIONS IN: water channel activity%3B INVOLVED IN: response to salt stress%2C transport%3B LOCATED IN: plasma membrane%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Major intrinsic protein%2C conserved site (InterPro:IPR022357)%2C Aquaporin (InterPro:IPR012269)%2C Major intrinsic protein (InterPro:IPR000425)%3B BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1%3B4 (TAIR:AT4G00430.1)%3B Has 10720 Blast hits to 10702 proteins in 2215 species: Archae - 88%3B Bacteria - 5150%3B Metazoa - 1472%3B Fungi - 448%3B Plants - 2512%3B Viruses - 2%3B Other Eukaryotes - 1048 (source: NCBI BLink).
AT4G21120 gene AAT1 7.90 4:11269985 Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys%2C Arg and Glu in a yeast system.
AT4G23240 gene CRK16 7.81 4:12160478 Encodes a cysteine-rich receptor-like protein kinase.
AT4G18890 gene BEH3 7.49 4:10352386 BES1/BZR1 homolog 3 (BEH3)%3B CONTAINS InterPro DOMAIN/s: BZR1%2C transcriptional repressor (InterPro:IPR008540)%3B BEST Arabidopsis thaliana protein match is: BES1/BZR1 homolog 4 (TAIR:AT1G78700.1)%3B Has 411 Blast hits to 325 proteins in 33 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 41%3B Fungi - 2%3B Plants - 260%3B Viruses - 2%3B Other Eukaryotes - 98 (source: NCBI BLink).
AT4G19050 gene 7.20 4:10439984 NB-ARC domain-containing disease resistance protein%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: defense response%2C apoptosis%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G45510.2)%3B Has 34356 Blast hits to 17814 proteins in 759 species: Archae - 28%3B Bacteria - 2387%3B Metazoa - 7116%3B Fungi - 505%3B Plants - 22424%3B Viruses - 39%3B Other Eukaryotes - 1857 (source: NCBI BLink).
AT4G20270 gene BAM3 7.19 4:10949573 Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf%2C control of leaf shape%2C size and symmetry%2C male gametophyte development and ovule specification and function.
AT4G20140 gene GSO1 7.11 4:10883921 Encodes GASSHO1 (GSO1)%2C a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis.
AT4G19230 gene CYP707A1 7.07 4:10521259 Encodes a protein with ABA 8'-hydroxylase activity%2C involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determining the ABA levels in dry seeds. Gene involved in postgermination growth. Overexpression of CYP707A1 leads to a decrease in ABA levels and a reduction in after-ripening period to break dormancy.
AT4G19110 gene 6.96 4:10454497 Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: sperm cell%2C male gametophyte%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G45430.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G16800 gene 6.67 4:09454707 ATP-dependent caseinolytic (Clp) protease/crotonase family protein%3B FUNCTIONS IN: enoyl-CoA hydratase activity%2C catalytic activity%3B INVOLVED IN: fatty acid metabolic process%2C metabolic process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Enoyl-CoA hydratase/isomerase%2C conserved site (InterPro:IPR018376)%2C Crotonase%2C core (InterPro:IPR001753)%3B BEST Arabidopsis thaliana protein match is: delta(3%2C5)%2Cdelta(2%2C4)-dienoyl-CoA isomerase 1 (TAIR:AT5G43280.1)%3B Has 38027 Blast hits to 38009 proteins in 2336 species: Archae - 484%3B Bacteria - 24986%3B Metazoa - 1599%3B Fungi - 771%3B Plants - 617%3B Viruses - 0%3B Other Eukaryotes - 9570 (source: NCBI BLink).
AT4G18470 gene SNI1 6.46 4:10192909 Negative regulator of systemic acquired resistance (SAR)%2C repressor of pathogenesis-related PR gene expression which is removed by NPR1 upon induction of SAR. Encodes leucine-rich nuclear protein. Conserved in plants%2C with putative orthologs found in several plant species. Many NPR1-dependent PR gene are specifically derepressed in the sni1 mutant. The structural similarity of SNI1 to Armadillo repeat proteins implies that SNI1 may form a scaffold for interaction with proteins that modulate transcription. Histone modification may be involved in SNI1-mediated repression of PR genes.
AT4G17530 gene RAB1C 6.43 4:09773548 AtRabD2c encodes a Rab GTPase%2C which plays important roles in pollen development%2C germination and tube elongation.
AT2G20160 gene MEO 6.38 2:08699511 MEIDOS (MEO)%3B CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase%2C SCF complex%2C Skp subunit (InterPro:IPR016897)%2C SKP1 component%2C dimerisation (InterPro:IPR016072)%2C SKP1 component (InterPro:IPR001232)%2C BTB/POZ fold (InterPro:IPR011333)%2C SKP1 component%2C POZ (InterPro:IPR016073)%3B BEST Arabidopsis thaliana protein match is: SKP1-like 16 (TAIR:AT2G03190.1)%3B Has 1353 Blast hits to 1351 proteins in 263 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 502%3B Fungi - 168%3B Plants - 522%3B Viruses - 11%3B Other Eukaryotes - 150 (source: NCBI BLink).
AT4G17150 gene 6.34 4:09637963 alpha/beta-Hydrolases superfamily protein%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G14290.1)%3B Has 2710 Blast hits to 2708 proteins in 908 species: Archae - 16%3B Bacteria - 1896%3B Metazoa - 181%3B Fungi - 45%3B Plants - 202%3B Viruses - 0%3B Other Eukaryotes - 370 (source: NCBI BLink).
AT4G17695 gene KAN3 6.27 4:09847933 KANADI 3 (KAN3)%3B CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G32240.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G18540 gene 6.21 4:10221106 unknown protein%3B Has 209 Blast hits to 205 proteins in 54 species: Archae - 0%3B Bacteria - 17%3B Metazoa - 2%3B Fungi - 150%3B Plants - 40%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G20500 gene 6.15 4:00000000 transposable element gene [Source:TAIR;Acc:AT4G20500]
AT4G17860 gene 6.08 4:09924522 Protein of Unknown Function (DUF239)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: C globular stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239%2C plant (InterPro:IPR004314)%3B BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT5G46200.1)%3B Has 626 Blast hits to 604 proteins in 21 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 6%3B Plants - 616%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G48300 gene DGAT3 5.95 1:17847042 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B Has 96 Blast hits to 87 proteins in 37 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 12%3B Fungi - 2%3B Plants - 65%3B Viruses - 0%3B Other Eukaryotes - 15 (source: NCBI BLink).
AT4G18170 gene WRKY28 5.92 4:10061214 member of WRKY Transcription Factor%3B Group II-c. Involved in the activation of salicylic acid biosynthesis genes ICS1 and PBS3.
AT1G78970 gene LUP1 5.81 1:29703055 Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17%26#946%3B-dammarenyl cation.
AT4G18780 gene IRX1 5.81 4:10312624 Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation%2C reduced cellulose content%2C and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens%2C independent of salicylic acid%2C ethylene and jasmonate signaling.
AT4G16760 gene ACX1 5.73 4:09424534 Encodes a medium to long-chain acyl-CoA oxidase. Catalyzes the first step of fatty acid beta-oxidation. Involved in jasmonate biosynthesis. Gene expression is induced by wounding%2C drought stress%2C abscisic acid%2C and jasmonate.
AT3G42260 gene 5.70 3:14440090 transposable element gene [Source:TAIR;Acc:AT3G42260]
AT4G17070 gene 5.67 4:09595337 peptidyl-prolyl cis-trans isomerases%3B FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity%3B INVOLVED IN: response to oxidative stress%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891)%2C Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (InterPro:IPR002130)%3B Has 214 Blast hits to 208 proteins in 48 species: Archae - 0%3B Bacteria - 43%3B Metazoa - 9%3B Fungi - 0%3B Plants - 153%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).
AT4G17910 gene 5.49 4:09951173 transferases%2C transferring acyl groups%3B FUNCTIONS IN: transferase activity%2C transferring acyl groups%3B INVOLVED IN: GPI anchor biosynthetic process%3B LOCATED IN: integral to membrane%2C endoplasmic reticulum membrane%3B CONTAINS InterPro DOMAIN/s: GWT1 (InterPro:IPR009447)%3B Has 62 Blast hits to 62 proteins in 39 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 17%3B Fungi - 21%3B Plants - 15%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).
AT4G21890 gene 5.43 4:11610808 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleus%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 7 growth stages%3B Has 14 Blast hits to 14 proteins in 5 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 14%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G17350 gene 5.42 4:09701132 CONTAINS InterPro DOMAIN/s: Pleckstrin-like%2C plant (InterPro:IPR013666)%2C Protein of unknown function DUF828 (InterPro:IPR008546)%2C Pleckstrin homology (InterPro:IPR001849)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT5G47440.1)%3B Has 205 Blast hits to 188 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 3%3B Plants - 199%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).
AT5G62550 gene 5.39 5:25105576 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 9 growth stages%3B Has 14949 Blast hits to 9947 proteins in 971 species: Archae - 43%3B Bacteria - 3248%3B Metazoa - 4424%3B Fungi - 1542%3B Plants - 562%3B Viruses - 55%3B Other Eukaryotes - 5075 (source: NCBI BLink).
AT4G19040 gene EDR2 5.38 4:10431515 Encodes a PH and START domain-containing protein that mediates resistance to pathogenic fungi. Resistance requires salicylic acid signalling. Mutants are resistant to E. cichoracearum. Expressed throughout plant tissues and possibly localized to membranes /mitochondrion.
AT4G20170 gene GALS3 5.37 4:10896579 Domain of unknown function (DUF23)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166)%3B BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G44670.1)%3B Has 199 Blast hits to 199 proteins in 36 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 44%3B Fungi - 2%3B Plants - 116%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).
AT4G20400 gene JMJ14 5.36 4:11008558 Encodes a histone H3K4 demethylase repressing floral transition.
AT4G18800 gene RABA1d 5.34 4:10319862 Encodes RabA1d%2C a member of the RabA subfamily of small Rab GTPases.
AT4G34160 gene CYCD3%3B1 5.32 4:16357421 encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1.
AT4G19210 gene ABCE2 5.16 4:10501123 member of RLI subfamily
AT2G29170 gene 5.12 2:12541650 NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C binding%2C catalytic activity%3B INVOLVED IN: oxidation reduction%2C metabolic process%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040)%2C Glucose/ribitol dehydrogenase (InterPro:IPR002347)%2C Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29150.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).
AT2G35290 gene 5.09 2:14861199 unknown protein%3B Has 39 Blast hits to 39 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 39%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G35880 gene 5.06 4:16993062 Eukaryotic aspartyl protease family protein%3B FUNCTIONS IN: aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: anchored to membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109)%2C Peptidase aspartic%2C catalytic (InterPro:IPR009007)%2C Peptidase A1 (InterPro:IPR001461)%2C Peptidase aspartic%2C active site (InterPro:IPR001969)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT2G17760.1)%3B Has 2412 Blast hits to 2405 proteins in 206 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 331%3B Fungi - 271%3B Plants - 1693%3B Viruses - 0%3B Other Eukaryotes - 117 (source: NCBI BLink).
AT4G18880 gene HSF A4A 4.98 4:10347479 Encodes a member of Heat Stress Transcription Factor(Hsf) family that is a substrate of the MPK3/MPK6 signaling and regulates stress responses.
AT4G17160 gene RABB1a 4.94 4:09641859 RAB GTPase homolog B1A (RABB1a)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: protein transport%2C small GTPase mediated signal transduction%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog B1C (TAIR:AT4G17170.1)%3B Has 26911 Blast hits to 26856 proteins in 734 species: Archae - 13%3B Bacteria - 137%3B Metazoa - 14009%3B Fungi - 4103%3B Plants - 2888%3B Viruses - 20%3B Other Eukaryotes - 5741 (source: NCBI BLink).
AT2G07707 gene 4.84 2:03386292 Plant mitochondrial ATPase%2C F0 complex%2C subunit 8 protein%3B FUNCTIONS IN: cobalt ion binding%3B INVOLVED IN: ATP synthesis coupled proton transport%3B LOCATED IN: mitochondrion%2C vacuole%2C membrane%3B EXPRESSED IN: cultured cell%2C leaf%3B CONTAINS InterPro DOMAIN/s: ATPase%2C F0 complex%2C subunit 8%2C mitochondrial%2C plant (InterPro:IPR003319)%2C Protein of unknown function DUF1082%2C plant mitochondria (InterPro:IPR009455)%3B BEST Arabidopsis thaliana protein match is: Plant mitochondrial ATPase%2C F0 complex%2C subunit 8 protein (TAIR:ATMG00480.1)%3B Has 226 Blast hits to 226 proteins in 79 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 218%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink).
AT1G21910 gene DREB26 4.83 1:07696427 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1%2C RAP2.9 and RAP2.10.
AT4G19810 gene ChiC 4.76 4:10763206 ChiC encodes a Class V chitinase that is a part of glycoside hydrolase family 18 based on CAZy groupings. It appears to primarily act as an exochitinase in vitro where it predominantly cleaves a chitobiose (GlcNAc)2 residue from the non-reducing end of a chitin oligosaccharide. However%2C it shows some minor endochitinase activity in vitro%2C as well. A putative 24 amino-acid signal peptide may direct this protein to the secretory system and it has been detected in cell wall apoplastic fluid. RT-PCR experiments demonstrate that ChiC transcript levels are increased in response to abscisisc acid%2C jasmonic acid%2C and NaCl stress. Microarray results also suggest that transcript levels rise in response to osmotic stress%2C two fungal pathogens%2C a bacterial pathogen%2C and the elicitor flagellin.
AT4G28780 gene 4.75 4:14215473 GDSL-like Lipase/Acylhydrolase superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C acting on ester bonds%2C carboxylesterase activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Lipase%2C GDSL (InterPro:IPR001087)%3B BEST Arabidopsis thaliana protein match is: Li-tolerant lipase 1 (TAIR:AT3G04290.1)%3B Has 3338 Blast hits to 3300 proteins in 166 species: Archae - 0%3B Bacteria - 226%3B Metazoa - 0%3B Fungi - 7%3B Plants - 3087%3B Viruses - 0%3B Other Eukaryotes - 18 (source: NCBI BLink).
AT4G22753 gene SMO1-3 4.73 4:11952019 Methylsterol monooxygenase 1-3 [Source:UniProtKB/Swiss-Prot;Acc:F4JLZ6]
AT4G17250 gene 4.72 4:09670763 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47580.1)%3B Has 31 Blast hits to 31 proteins in 6 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 31%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G16370 gene OPT3 4.72 4:09247302 Encodes an oligopeptide transporter involved in metal homeostasis. It loads iron into the phloem%2C facilitates iron recirculation from the xylem to the phloem%2C and regulates both shoot-to-root iron signaling and iron redistribution from mature to developing tissues.
AT4G11310 gene 4.65 4:06883513 cysteine proteinase precursor-like protein
AT4G20420 gene 4.64 4:11016970 Tapetum specific protein TAP35/TAP44%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Tapetum specific TAP35TAP44 (InterPro:IPR009891)%3B BEST Arabidopsis thaliana protein match is: Tapetum specific protein TAP35/TAP44 (TAIR:AT5G44540.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT4G21580 gene 4.64 4:11475709 oxidoreductase%2C zinc-binding dehydrogenase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C binding%2C catalytic activity%2C zinc ion binding%3B INVOLVED IN: oxidation reduction%2C metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032)%2C Quinone oxidoreductase putative%2C PIG3 (InterPro:IPR014189)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C Alcohol dehydrogenase GroES-like (InterPro:IPR013154)%2C Alcohol dehydrogenase%2C C-terminal (InterPro:IPR013149)%2C Alcohol dehydrogenase superfamily%2C zinc-containing (InterPro:IPR002085)%3B BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding alcohol dehydrogenase family protein (TAIR:AT5G61510.1)%3B Has 49097 Blast hits to 48922 proteins in 2912 species: Archae - 689%3B Bacteria - 31322%3B Metazoa - 2136%3B Fungi - 4353%3B Plants - 1878%3B Viruses - 0%3B Other Eukaryotes - 8719 (source: NCBI BLink).
AT4G25760 gene GDU2 4.54 4:13116028 Encodes a member of the GDU (glutamine dumper) family proteins involved in amino acid export: At4g31730 (GDU1)%2C At4g25760 (GDU2)%2C At5g57685 (GDU3)%2C At2g24762 (GDU4)%2C At5g24920 (GDU5)%2C At3g30725 (GDU6) and At5g38770 (GDU7).
AT4G17330 gene G2484-1 4.48 4:09688851 gene of unknown function expressed in seedlings%2C flower buds and stems
AT3G56090 gene FER3 4.47 3:20813904 Encodes FERRITIN 3%2C AtFER3. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage%2C but they do not constitute the major iron pool.
AT2G35190 gene NPSN11 4.47 2:14830626 plant-specific SNARE located in cell plate of dividing cells. cofractionates with the cytokinesis-specific syntaxin%2C KNOLLE%2C which is required for the formation of the cell plate.
AT4G36250 gene ALDH3F1 4.44 4:17150740 Encodes a putative aldehyde dehydrogenase. The gene is not responsive to osmotic stress and is expressed constitutively at a low level in plantlets and root cultures.
AT2G32610 gene CSLB01 4.41 2:13836117 encodes a gene similar to cellulose synthase
AT5G58520 gene 4.40 5:23655140 Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity%2C kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G07140.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT4G23030 gene 4.28 4:12072760 MATE efflux family protein%3B FUNCTIONS IN: antiporter activity%2C drug transmembrane transporter activity%2C transporter activity%3B INVOLVED IN: drug transmembrane transport%2C transmembrane transport%3B LOCATED IN: membrane%3B EXPRESSED IN: stem%2C male gametophyte%2C flower%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528)%3B BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G52050.1)%3B Has 11257 Blast hits to 11210 proteins in 2068 species: Archae - 244%3B Bacteria - 8067%3B Metazoa - 149%3B Fungi - 328%3B Plants - 1302%3B Viruses - 0%3B Other Eukaryotes - 1167 (source: NCBI BLink).
AT4G17500 gene ERF-1 4.24 4:09759203 Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1%2C ATERF-2%2C AND ATERF-5.
AT3G23340 gene ckl10 4.17 3:08350803 casein kinase I-like 10 (ckl10)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: casein kinase I (TAIR:AT4G14340.1)%3B Has 56550 Blast hits to 56234 proteins in 2232 species: Archae - 39%3B Bacteria - 9117%3B Metazoa - 21673%3B Fungi - 6267%3B Plants - 8804%3B Viruses - 331%3B Other Eukaryotes - 10319 (source: NCBI BLink).
AT1G79840 gene GL2 4.16 1:30036956 Glabra 2%2C a homeodomain protein affects epidermal cell identity including trichomes%2C root hairs%2C and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
AT4G17050 gene UGLYAH 4.15 4:09589501 Encodes a protein with ureidoglycine aminohydrolase activity.
AT4G20240 gene CYP71A27 4.12 4:10931335 putative cytochrome P450
AT4G24670 gene TAR2 4.11 4:12727531 Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. Double mutant analyses suggest that this protein is involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling.
AT4G20280 gene TAF11 4.10 4:10953540 Encodes TAF11%2C a putative TBP-associated factor (TBP: TATA binding protein).
AT4G18490 gene 4.04 4:10203598 unknown protein%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G18600 gene WAVE5 4.04 4:10239638 Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.
AT3G14890 gene 4.03 3:05008676 phosphoesterase%3B FUNCTIONS IN: DNA binding%2C catalytic activity%2C zinc ion binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase%2C subfamily IIIA (InterPro:IPR006549)%2C Polynucleotide kinase 3 phosphatase%2C central region (InterPro:IPR013954)%2C Zinc finger%2C PARP-type (InterPro:IPR001510)%2C Polynucleotide kinase 3%2C phosphatase (InterPro:IPR015636)%2C DNA 3-phosphatase (InterPro:IPR006551)%3B BEST Arabidopsis thaliana protein match is: poly(ADP-ribose) polymerase 2 (TAIR:AT2G31320.1)%3B Has 2061 Blast hits to 1425 proteins in 265 species: Archae - 2%3B Bacteria - 49%3B Metazoa - 943%3B Fungi - 202%3B Plants - 219%3B Viruses - 45%3B Other Eukaryotes - 601 (source: NCBI BLink).
AT2G41580 gene 3.98 2:17339804 transposable element gene [Source:TAIR;Acc:AT2G41580]
AT1G71140 gene 3.95 1:26824564 MATE efflux family protein%3B FUNCTIONS IN: antiporter activity%2C drug transmembrane transporter activity%2C transporter activity%3B INVOLVED IN: drug transmembrane transport%2C transmembrane transport%3B LOCATED IN: plasma membrane%2C membrane%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521)%2C Multi antimicrobial extrusion protein MatE (InterPro:IPR002528)%3B BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15150.1)%3B Has 10143 Blast hits to 10059 proteins in 1990 species: Archae - 227%3B Bacteria - 7201%3B Metazoa - 146%3B Fungi - 330%3B Plants - 1347%3B Viruses - 0%3B Other Eukaryotes - 892 (source: NCBI BLink).
AT2G32460 gene MYB101 3.94 2:13782107 Member of the R2R3 factor gene family.
AT4G30890 gene UBP24 3.90 4:15036020 Encodes a ubiquitin-specific protease.
AT4G18570 gene 3.88 4:10231218 Tetratricopeptide repeat (TPR)-like superfamily protein%3B BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT3G25690.3)%3B Has 41355 Blast hits to 22856 proteins in 1198 species: Archae - 106%3B Bacteria - 4898%3B Metazoa - 15706%3B Fungi - 4501%3B Plants - 9175%3B Viruses - 1532%3B Other Eukaryotes - 5437 (source: NCBI BLink).
AT5G05250 gene 3.87 5:01556987 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56360.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G16480 gene INT4 3.85 4:09290403 Encodes a high affinity H+:%3Ci%3Emyo%3C/i%3E-inositol symporter. The only other compound shown to be transported was pinitol%2C a methylated derivative of %3Ci%3Emyo%3C/i%3E-inositol.
AT4G19900 gene 3.84 4:10789091 alpha 1%2C4-glycosyltransferase family protein%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%2C Golgi stack%3B EXPRESSED IN: flower%2C seed%3B EXPRESSED DURING: petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Alpha 1%2C4-glycosyltransferase conserved region (InterPro:IPR007652)%2C Glycosyltransferase%2C DXD sugar-binding region (InterPro:IPR007577)%3B BEST Arabidopsis thaliana protein match is: alpha 1%2C4-glycosyltransferase family protein (TAIR:AT2G38152.1)%3B Has 54113 Blast hits to 14510 proteins in 385 species: Archae - 4%3B Bacteria - 200%3B Metazoa - 877%3B Fungi - 767%3B Plants - 50641%3B Viruses - 0%3B Other Eukaryotes - 1624 (source: NCBI BLink).
AT1G59930 gene 3.84 1:22060924 Encodes a maternally expressed imprinted gene.
AT5G57970 gene 3.84 5:23466685 DNA glycosylase superfamily protein%3B FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity%2C catalytic activity%3B INVOLVED IN: DNA repair%2C base-excision repair%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257)%2C Methyladenine glycosylase (InterPro:IPR005019)%3B BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G80850.1)%3B Has 3809 Blast hits to 3727 proteins in 1589 species: Archae - 10%3B Bacteria - 3189%3B Metazoa - 57%3B Fungi - 9%3B Plants - 164%3B Viruses - 0%3B Other Eukaryotes - 380 (source: NCBI BLink).
AT4G18010 gene IP5PII 3.82 4:09990988 Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1%2C4%2C5)P3) and IP4 (inositol(1%2C3%2C4%2C5)P4)%2C but it does not appear to be active against phosphatidylinositol 4%2C5 bisphosphate. Overexpression of this gene renders plants insensitive to ABA in germination and growth assays.
AT5G37790 gene 3.82 5:15008139 Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G66460.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT4G19200 gene 3.79 4:10498748 proline-rich family protein%3B Has 23677 Blast hits to 12773 proteins in 953 species: Archae - 9%3B Bacteria - 5550%3B Metazoa - 10820%3B Fungi - 2264%3B Plants - 2677%3B Viruses - 157%3B Other Eukaryotes - 2200 (source: NCBI BLink).
AT4G15490 gene UGT84A3 3.78 4:08852656 Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.
AT5G06050 gene 3.75 5:01820117 Putative methyltransferase family protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248%2C methyltransferase putative (InterPro:IPR004159)%3B BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT2G39750.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G01600 gene FER1 3.74 5:00227953 Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Expression of the gene is downregulated in the presence of paraquat%2C an inducer of photoxidative stress.
AT3G55130 gene ABCG19 3.74 3:20433839 Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta%2C confers resistance to kanamycin.
AT5G56100 gene 3.72 5:22716917 glycine-rich protein / oleosin%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: lipid storage%3B LOCATED IN: monolayer-surrounded lipid storage body%2C integral to membrane%2C membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT4G21960 gene PRXR1 3.71 4:11646109 Encodes AT4g21960 (AT4g21960/T8O5_170).
AT3G01680 gene SEOR1 3.71 3:00251868 Encodes a protein localized to phloem filaments that is required for phloem filament formation.
AT1G80080 gene TMM 3.70 1:30127819 Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development. Its transcript levels change after inducing MUTE expression in a mute background.
AT1G36120 gene 3.69 1:00000000 transposable element gene [Source:TAIR;Acc:AT1G36120]
AT1G75780 gene TUB1 3.68 1:28451138 beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses
AT4G22130 gene SRF8 3.66 4:11723388 STRUBBELIG-receptor family 8 (SRF8)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 6 (TAIR:AT1G53730.1)%3B Has 157986 Blast hits to 122624 proteins in 4302 species: Archae - 115%3B Bacteria - 15061%3B Metazoa - 46349%3B Fungi - 9189%3B Plants - 68190%3B Viruses - 340%3B Other Eukaryotes - 18742 (source: NCBI BLink).
AT3G50060 gene MYB77 3.61 3:18557607 Encodes a member of the R2R3 transcription factor gene family. Expressed in response to potassium deprivation and auxin. Involved in lateral root development. Interacts with ARF7 and regulates the expression of some auxin responsive genes.
AT2G24160 gene 3.60 2:10268008 pseudogene, leucine rich repeat protein family, contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; contains some similarity to Cf-4 (Lycopersicon hirsutum) gi [Source:TAIR;Acc:AT2G24160]
AT4G17430 gene 3.60 4:09724710 O-fucosyltransferase family protein%3B CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378)%3B Has 42 Blast hits to 40 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 3%3B Plants - 37%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).
AT3G23090 gene 3.58 3:08214289 TPX2 (targeting protein for Xklp2) protein family%3B CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675)%3B BEST Arabidopsis thaliana protein match is: WVD2-like 1 (TAIR:AT3G04630.3)%3B Has 678 Blast hits to 638 proteins in 104 species: Archae - 2%3B Bacteria - 22%3B Metazoa - 209%3B Fungi - 27%3B Plants - 299%3B Viruses - 0%3B Other Eukaryotes - 119 (source: NCBI BLink).
AT2G16780 gene MSI2 3.56 2:07281374 Encodes a WD-40 repeat protein similar to yeast MSI1.
AT4G18425 gene 3.56 4:10181190 Protein of unknown function (DUF679)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF679) (TAIR:AT5G46090.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G66500 gene 3.54 5:26547995 Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G03580.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT1G23460 gene 3.53 1:08326747 Pectin lyase-like superfamily protein%3B FUNCTIONS IN: polygalacturonase activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Pectin lyase fold (InterPro:IPR012334)%2C Parallel beta-helix repeat (InterPro:IPR006626)%2C Glycoside hydrolase%2C family 28 (InterPro:IPR000743)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G70500.1)%3B Has 4300 Blast hits to 4283 proteins in 531 species: Archae - 4%3B Bacteria - 1235%3B Metazoa - 14%3B Fungi - 1418%3B Plants - 1493%3B Viruses - 0%3B Other Eukaryotes - 136 (source: NCBI BLink).
AT5G62940 gene HCA2 3.51 5:25256852 HCA2 induces the formation of interfascicular cambium and regulates vascular tissue development in the aerial parts of the plant. Evidence from both gain of function and dominant negative alleles.
AT3G46490 gene 3.50 3:17115483 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors%2C oxidoreductase activity%2C iron ion binding%3B INVOLVED IN: oxidation reduction%2C secondary metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283)%2C Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G35190.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G18140 gene SSP4b 3.49 4:10046287 Encodes a SCP1-like small phosphatase (SSP). Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4)%2C AT5G11860 (SSP5)%2C AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei%2C whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins%2C with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD%2C whereas SSP5 dephosphorylated only Ser5-PO(4).
AT4G16850 gene 3.47 4:09480046 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31130.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT1G53870 gene 3.42 1:20112141 Protein of unknown function (DUF567)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF567) (TAIR:AT1G53890.1)%3B Has 264 Blast hits to 263 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 264%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G47670 gene 3.41 1:17536625 Transmembrane amino acid transporter family protein%3B FUNCTIONS IN: amino acid transmembrane transporter activity%3B INVOLVED IN: amino acid transport%3B LOCATED IN: plasma membrane%2C membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Amino acid transporter%2C transmembrane (InterPro:IPR013057)%3B BEST Arabidopsis thaliana protein match is: LYS/HIS transporter 7 (TAIR:AT4G35180.1)%3B Has 1570 Blast hits to 1567 proteins in 175 species: Archae - 0%3B Bacteria - 20%3B Metazoa - 174%3B Fungi - 154%3B Plants - 1118%3B Viruses - 0%3B Other Eukaryotes - 104 (source: NCBI BLink).
AT5G07400 gene 3.39 5:02340623 forkhead-associated domain-containing protein / FHA domain-containing protein%3B FUNCTIONS IN: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides%2C phosphoric diester hydrolase activity%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: DNA repair%3B LOCATED IN: nucleus%3B EXPRESSED IN: sperm cell%2C seed%3B EXPRESSED DURING: F mature embryo stage%3B CONTAINS InterPro DOMAIN/s: Tyrosyl-DNA phosphodiesterase (InterPro:IPR010347)%2C SMAD/FHA domain (InterPro:IPR008984)%2C Forkhead-associated (FHA) domain (InterPro:IPR000253)%2C HIP116%2C Rad5p N-terminal (InterPro:IPR014905)%3B BEST Arabidopsis thaliana protein match is: tyrosyl-DNA phosphodiesterase-related (TAIR:AT5G15170.1)%3B Has 394 Blast hits to 361 proteins in 119 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 165%3B Fungi - 89%3B Plants - 76%3B Viruses - 0%3B Other Eukaryotes - 62 (source: NCBI BLink).
AT5G33300 gene 3.36 5:12562426 chromosome-associated kinesin-related%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G60930.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).
AT2G23120 gene 3.34 2:09841842 Late embryogenesis abundant protein%2C group 6%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein%2C group 6 (InterPro:IPR018930)%3B BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein%2C group 6 (TAIR:AT2G23110.2)%3B Has 37 Blast hits to 37 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 37%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G18070 gene BGLU43 3.32 3:06187267 beta glucosidase 43 (BGLU43)%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 1 (InterPro:IPR001360)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: B-S glucosidase 44 (TAIR:AT3G18080.1)%3B Has 11267 Blast hits to 10950 proteins in 1466 species: Archae - 142%3B Bacteria - 7742%3B Metazoa - 714%3B Fungi - 202%3B Plants - 1468%3B Viruses - 0%3B Other Eukaryotes - 999 (source: NCBI BLink).
AT4G24660 gene HB22 3.30 4:12722912 homeobox protein 22 (HB22)%3B CONTAINS InterPro DOMAIN/s: Homeobox domain%2C ZF-HD class (InterPro:IPR006455)%2C ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (InterPro:IPR006456)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: homeobox protein 25 (TAIR:AT5G65410.1)%3B Has 493 Blast hits to 471 proteins in 34 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3%3B Fungi - 0%3B Plants - 490%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G56360 gene 3.29 3:20896332 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05250.1)%3B Has 45 Blast hits to 45 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 45%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT5G03360 gene 3.29 5:00822077 DC1 domain-containing protein%3B CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146)%2C C1-like (InterPro:IPR011424)%3B BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G26380.1)%3B Has 3288 Blast hits to 689 proteins in 36 species: Archae - 2%3B Bacteria - 14%3B Metazoa - 5%3B Fungi - 0%3B Plants - 3251%3B Viruses - 4%3B Other Eukaryotes - 12 (source: NCBI BLink).
AT1G11520 gene 3.28 1:03873029 pliceosome associated protein-related%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: male gametophyte%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B BEST Arabidopsis thaliana protein match is: proline-rich spliceosome-associated (PSP) family protein (TAIR:AT4G21660.2)%3B Has 139 Blast hits to 132 proteins in 55 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 92%3B Fungi - 0%3B Plants - 40%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).
AT4G21350 gene PUB8 3.28 4:11356143 Encodes a U-box/ARM repeat protein required fore self-incompatibility.
AT4G12590 gene 3.26 4:07450943 FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%2C endoplasmic reticulum%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF106%2C transmembrane (InterPro:IPR002809)%2C Uncharacterised conserved protein UCP010045%2C transmembrane eukaryotic (InterPro:IPR008568)%3B Has 409 Blast hits to 409 proteins in 203 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 152%3B Fungi - 136%3B Plants - 53%3B Viruses - 0%3B Other Eukaryotes - 68 (source: NCBI BLink).
AT1G77960 gene 3.25 1:29310021 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28630.4)%3B Has 13187 Blast hits to 6837 proteins in 407 species: Archae - 0%3B Bacteria - 447%3B Metazoa - 4509%3B Fungi - 1333%3B Plants - 399%3B Viruses - 45%3B Other Eukaryotes - 6454 (source: NCBI BLink).
AT4G23930 gene 3.24 4:12435946 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein%2C group 2 (InterPro:IPR004864)%3B BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT1G64450.1)%3B Has 327 Blast hits to 319 proteins in 21 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 327%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT2G40300 gene FER4 3.23 2:16831109 Encodes FERRITIN 4%2C AtFER4. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage%2C but they do not constitute the major iron pool. Localize to mitochondria. Knock out mutants are not sensitive to abiotic stress.
AT2G07718 gene 3.22 2:03424685 Cytochrome b/b6 protein%3B FUNCTIONS IN: oxidoreductase activity%3B INVOLVED IN: respiratory electron transport chain%3B LOCATED IN: membrane%3B CONTAINS InterPro DOMAIN/s: Cytochrome b/b6 (InterPro:IPR016175)%3B BEST Arabidopsis thaliana protein match is: Cytochrome b/b6 protein (TAIR:ATMG00590.1)%3B Has 30524 Blast hits to 30523 proteins in 4798 species: Archae - 0%3B Bacteria - 37%3B Metazoa - 29076%3B Fungi - 2%3B Plants - 664%3B Viruses - 0%3B Other Eukaryotes - 745 (source: NCBI BLink).
AT3G46290 gene HERK1 3.22 3:17012500 Encodes HERCULES1 (HERK1)%2C a receptor kinase regulated by Brassinosteroids and required for cell elongation during vegetative growth.
AT5G22400 gene 3.21 5:07422670 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain%3B FUNCTIONS IN: Rac GTPase activator activity%3B INVOLVED IN: signal transduction%3B LOCATED IN: intracellular%2C chloroplast%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095)%2C Rho GTPase activation protein (InterPro:IPR008936)%2C RhoGAP (InterPro:IPR000198)%3B BEST Arabidopsis thaliana protein match is: rac GTPase activating protein (TAIR:AT3G11490.1)%3B Has 3977 Blast hits to 3976 proteins in 184 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2927%3B Fungi - 443%3B Plants - 206%3B Viruses - 0%3B Other Eukaryotes - 401 (source: NCBI BLink).
AT5G61260 gene 3.21 5:24636296 Plant calmodulin-binding protein-related%3B CONTAINS InterPro DOMAIN/s: Calmodulin-binding protein%2C plant (InterPro:IPR012417)%3B BEST Arabidopsis thaliana protein match is: Plant calmodulin-binding protein-related (TAIR:AT5G07820.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT4G31480 gene 3.21 4:15263016 Coatomer%2C beta subunit%3B FUNCTIONS IN: clathrin binding%2C structural molecule activity%2C binding%3B INVOLVED IN: intracellular protein transport%2C vesicle-mediated transport%3B LOCATED IN: membrane coat%2C COPI vesicle coat%3B EXPRESSED IN: male gametophyte%2C guard cell%3B EXPRESSED DURING: M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Coatomer%2C beta subunit%2C C-terminal (InterPro:IPR011710)%2C Armadillo-like helical (InterPro:IPR011989)%2C Coatomer%2C beta subunit (InterPro:IPR016460)%2C Armadillo-type fold (InterPro:IPR016024)%2C Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (InterPro:IPR002553)%3B BEST Arabidopsis thaliana protein match is: Coatomer%2C beta subunit (TAIR:AT4G31490.1)%3B Has 2798 Blast hits to 2724 proteins in 309 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1200%3B Fungi - 640%3B Plants - 392%3B Viruses - 0%3B Other Eukaryotes - 566 (source: NCBI BLink).
AT1G70300 gene KUP6 3.20 1:26477743 potassium transporter
AT4G21326 gene SBT3.12 3.17 4:11345872 subtilase 3.12 (SBT3.12)%3B FUNCTIONS IN: identical protein binding%2C serine-type endopeptidase activity%3B INVOLVED IN: proteolysis%2C negative regulation of catalytic activity%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S8/S53%2C subtilisin/kexin/sedolisin (InterPro:IPR000209)%2C Peptidase S8%2C subtilisin-related (InterPro:IPR015500)%2C Peptidase S8/S53%2C subtilisin%2C active site (InterPro:IPR022398)%2C Proteinase inhibitor I9%2C subtilisin propeptide (InterPro:IPR010259)%3B BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT4G10550.1)%3B Has 5018 Blast hits to 4809 proteins in 783 species: Archae - 120%3B Bacteria - 2466%3B Metazoa - 11%3B Fungi - 129%3B Plants - 1970%3B Viruses - 0%3B Other Eukaryotes - 322 (source: NCBI BLink).
AT5G35580 gene 3.17 5:13761823 Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: root%2C stamen%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G05940.1)%3B Has 116021 Blast hits to 114684 proteins in 3463 species: Archae - 93%3B Bacteria - 13781%3B Metazoa - 42325%3B Fungi - 9577%3B Plants - 32686%3B Viruses - 372%3B Other Eukaryotes - 17187 (source: NCBI BLink).
AT4G18350 gene NCED2 3.17 4:10142255 Encodes 9-%3Ci%3Ecis%3C/i%3E-epoxycarotenoid dioxygenase%2C a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition.
AT4G21170 gene 3.17 4:11286756 Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: membrane%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1)%3B Has 7405 Blast hits to 3644 proteins in 112 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 5%3B Fungi - 6%3B Plants - 7339%3B Viruses - 0%3B Other Eukaryotes - 55 (source: NCBI BLink).
AT1G23020 gene FRO3 3.15 1:08149868 Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root%2C shoot%2C flower and cotyledon.
AT5G10520 gene RBK1 3.14 5:03319870 ROP binding protein kinases 1 (RBK1)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: defense response%2C incompatible interaction%3B LOCATED IN: cytosol%2C endomembrane system%3B EXPRESSED IN: 6 plant structures%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G65530.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G16200 gene 3.13 5:05289401 50S ribosomal protein-related%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66890.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT1G01750 gene ADF11 3.13 1:00275188 actin depolymerizing factor 11 (ADF11)%3B FUNCTIONS IN: actin binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Actin-binding%2C cofilin/tropomyosin type (InterPro:IPR002108)%3B BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 8 (TAIR:AT4G00680.1)%3B Has 1654 Blast hits to 1631 proteins in 274 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 781%3B Fungi - 163%3B Plants - 515%3B Viruses - 0%3B Other Eukaryotes - 190 (source: NCBI BLink).
AT5G37770 gene TCH2 3.13 5:14997514 Encodes a protein with 40%25 similarity to calmodulin. Binds Ca(2+) and%2C as a consequence%2C undergoes conformational changes. CML24 expression occurs in all major organs%2C and transcript levels are increased from 2- to 15-fold in plants subjected to touch%2C darkness%2C heat%2C cold%2C hydrogen peroxide%2C abscisic acid (ABA)%2C and indole-3-acetic acid. However%2C CML24 protein accumulation changes were not detectable. The putative CML24 regulatory region confers reporter expression at sites of predicted mechanical stress%3B in regions undergoing growth%3B in vascular tissues and various floral organs%3B and in stomata%2C trichomes%2C and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth%2C are defective in long-day induction of flowering%2C and have enhanced tolerance to CoCl(2)%2C molybdic acid%2C ZnSO(4)%2C and MgCl(2). Also regulates nitric oxide levels.
AT2G34610 gene 3.12 2:14575392 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30190.1)%3B Has 342 Blast hits to 279 proteins in 74 species: Archae - 0%3B Bacteria - 7%3B Metazoa - 76%3B Fungi - 18%3B Plants - 51%3B Viruses - 0%3B Other Eukaryotes - 190 (source: NCBI BLink).
AT1G47310 gene 3.12 1:17342739 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 45 Blast hits to 45 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 45%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT2G29790 gene 3.11 2:12720614 Encodes a Maternally expressed gene (MEG) family protein [pseudogene]
AT5G53450 gene ORG1 3.10 5:21688763 OBP3-responsive gene 1 (ORG1)%3B FUNCTIONS IN: structural molecule activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase PLK4 (InterPro:IPR020664)%2C Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Plastid lipid-associated protein/fibrillin (InterPro:IPR006843)%2C Protein kinase-like domain (InterPro:IPR011009)%3B Has 595 Blast hits to 591 proteins in 152 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 162%3B Fungi - 48%3B Plants - 309%3B Viruses - 0%3B Other Eukaryotes - 73 (source: NCBI BLink).
AT1G62730 gene 3.09 1:23229059 Terpenoid synthases superfamily protein%3B FUNCTIONS IN: transferase activity%3B INVOLVED IN: biosynthetic process%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949)%2C Squalene/phytoene synthase (InterPro:IPR002060)%3B Has 1013 Blast hits to 1013 proteins in 466 species: Archae - 0%3B Bacteria - 638%3B Metazoa - 104%3B Fungi - 106%3B Plants - 45%3B Viruses - 0%3B Other Eukaryotes - 120 (source: NCBI BLink).
AT4G19850 gene PP2-A2 3.08 4:10776591 encodes a protein similar to phloem protein 2 in cucumber. a member of a large gene family.
AT5G53280 gene PDV1 3.08 5:21607410 An integral outer envelope membrane protein (as its homolog PDV2)%2C component of the plastid division machinery. Similar to ARC5%2C PDV1 localized to a discontinuous ring at the division site in wild-type plants. PDV1 and PDV2 are required for localization of ARC5 at the chloroplast division site. Topological analysis showed that the large N-terminal region of PDV1 upstream of the transmembrane helix bearing a putative coiled-coil domain is exposed to the cytosol. Mutation of the conserved PDV1 C-terminal Gly residue did not block PDV1 insertion into the outer envelope membrane but did abolish its localization to the division site.
AT4G36180 gene 3.08 4:17119973 Leucine-rich receptor-like protein kinase family protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway%2C protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT1G75640.1)%3B Has 274404 Blast hits to 147338 proteins in 4291 species: Archae - 207%3B Bacteria - 28458%3B Metazoa - 89754%3B Fungi - 12028%3B Plants - 112070%3B Viruses - 470%3B Other Eukaryotes - 31417 (source: NCBI BLink).
AT2G32010 gene CVL1 3.07 2:13624751 Encodes an inositol polyphosphate 5%E2%80%99-phosphatase (5PTase). Mediating phosphoinositide signaling. Involved in establishment of foliar vein patterns.
AT5G46880 gene HB-7 3.06 5:19030844 homeobox-7 (HB-7)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356)%2C Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 4 (TAIR:AT4G17710.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).
AT3G56060 gene 3.06 3:20803038 Glucose-methanol-choline (GMC) oxidoreductase family protein%3B FUNCTIONS IN: aldehyde-lyase activity%2C oxidoreductase activity%2C acting on CH-OH group of donors%2C FAD binding%3B INVOLVED IN: alcohol metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase%2C N-terminal (InterPro:IPR000172)%2C Glucose-methanol-choline oxidoreductase (InterPro:IPR012132)%2C Glucose-methanol-choline oxidoreductase%2C C-terminal (InterPro:IPR007867)%3B BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT5G51950.1)%3B Has 10629 Blast hits to 10467 proteins in 1108 species: Archae - 4%3B Bacteria - 3922%3B Metazoa - 819%3B Fungi - 1505%3B Plants - 305%3B Viruses - 15%3B Other Eukaryotes - 4059 (source: NCBI BLink).
AT1G35140 gene PHI-1 3.06 1:12851983 EXL1 is involved in the C-starvation response. Phenotypic changes of an exl1 loss of function mutant became evident only under corresponding experimental conditions. For example%2C the mutant showed diminished biomass production in a short-day/low light growth regime%2C impaired survival during extended night%2C and impaired survival of anoxia stress.
AT4G38190 gene CSLD4 3.06 4:17909832 encodes a gene similar to cellulose synthase
AT4G17215 gene 3.06 4:09655669 Pollen Ole e 1 allergen and extensin family protein%3B CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041)%3B BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT5G47635.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G16880 gene 3.03 4:09495983 Leucine-rich repeat (LRR) family protein%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1)%3B Has 2574 Blast hits to 2178 proteins in 46 species: Archae - 0%3B Bacteria - 11%3B Metazoa - 1%3B Fungi - 0%3B Plants - 2558%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).
AT2G17310 gene SON1 3.02 2:07531194 Encodes an F-Box protein that regulates a novel induced defense response independent of both salicylic acid and systemic acquired resistance
AT1G70890 gene MLP43 3.01 1:26725521 MLP-like protein 43 (MLP43)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to biotic stimulus%2C defense response%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916)%3B BEST Arabidopsis thaliana protein match is: MLP-like protein 28 (TAIR:AT1G70830.5)%3B Has 440 Blast hits to 408 proteins in 49 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 440%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
GO domain Definition P-value
GTPase activity molecular_function "Catalysis of the reaction: GTP + H2O = GDP + phosphate." [ISBN:0198547684] 2.99e-02
protein kinase activity molecular_function "Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP." [MetaCyc:PROTEIN-KINASE-RXN] 2.99e-02
protein binding molecular_function "Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules)." [GOC:go_curators] 2.99e-02
iron ion transport biological_process "The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] 8.50e-05
integral component of membrane cellular_component "The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane." [GOC:dos, GOC:go_curators] 4.51e-02
oxidoreductase activity, acting on CH-OH group of donors molecular_function "Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor." [GOC:ai] 2.99e-02
cellulose synthase (UDP-forming) activity molecular_function "Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1)." [EC:2.4.1.12] 2.99e-02