Encodes a choloroplast membrane protein CJD1 (Chloroplast J-like Domain 1). Predicted to contain a transit peptide%2C three transmembrane domains and an N-terminal J-like domain. Influences fatty acid composition of chloroplast lipids.
Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns. WLIM1%2C WLIM2a%2C and WLIM2b are widely expressed%2C whereas PLIM2a%2C PLIM2b%2C and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.
similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445)%2C Vigna unguiculata (gi:1854445)%2C NOT a cinnamyl-alcohol dehydrogenase%3B Location of EST gb:H37170%2C gb:H77227 and gb:AA605565
Codes for a H+-driven%2C high affinity gamma-aminobutyric acid (GABA) transporter. Localized at the plasma membrane. In planta%2C AtGAT1 expression was highest in flowers and under conditions of elevated GABA concentrations such as wounding or senescence.
Encodes a tubulin-binding cofactor. Homozygous mutant plants are embryo lethal. Heterozygous mutant plants showed increased ploidy and higher numbers of spindles and phragmoplasts%2C suggesting a role in cell division.
Trm112p-like protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF343 (InterPro:IPR005651)%3B BEST Arabidopsis thaliana protein match is: Trm112p-like protein (TAIR:AT1G22270.1)%3B Has 414 Blast hits to 414 proteins in 194 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 149%3B Fungi - 129%3B Plants - 62%3B Viruses - 0%3B Other Eukaryotes - 74 (source: NCBI BLink).
Encodes MAC5A%2C a component of the MOS4-associated complex (MAC) that contributes to snc1- mediated autoimmunity. MAC is a highly conserved nuclear protein complex associated with the spliceosome. Homologues include AT1G07360 (MAC5A)%2C AT2G29580 (MAC5B) and AT5G07060 (MAC5C).
Protein of unknown function (DUF579)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148)%2C Conserved hypothetical protein CHP01627 (InterPro:IPR006514)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT4G09990.1)%3B Has 254 Blast hits to 253 proteins in 21 species: Archae - 0%3B Bacteria - 7%3B Metazoa - 0%3B Fungi - 0%3B Plants - 240%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).
Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis.
B-box type zinc finger family protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C B-box (InterPro:IPR000315)%3B BEST Arabidopsis thaliana protein match is: B-box type zinc finger family protein (TAIR:AT5G54470.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
Encodes a novel ribonucleic acid-binding protein that interacts with the endonuclease RNase E and supports its function in processing plastid ribonucleic acids.
Encodes a sterol-C24-methyltransferases involved in sterol biosynthesis. Mutants display altered sterol composition%2C serrated petals and sepals and altered cotyledon vascular patterning as well as ectopic endoreduplication. This suggests that suppression of endoreduplication is important for petal morphogenesis and that normal sterol composition is required for this suppression.
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1184 (InterPro:IPR009568)%2C Uncharacterised conserved protein UCP031143 (InterPro:IPR016970)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1184) (TAIR:AT1G35410.1)%3B Has 54 Blast hits to 36 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 54%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Protein of unknown function (DUF789)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT4G03420.1)%3B Has 266 Blast hits to 262 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 263%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).
Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1)%2C AT4G00380 (FDM2)%2C AT3G12550 (FDM3)%2C AT1G13790 (FDM4)%2C AT1G80790 (FDM5).
Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.
Encodes a membrane-localized protein that is predicted to function during cell wall modification.Overexpression of XTH33 results in abnormal cell morphology. It's expression is under epigenetic control by ATX1.
Encodes LOV1%2C a disease susceptibility gene that%2C paradoxically%2C is a member of the NBS-LRR resistance gene family. Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.
This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III%2C to which COL9 belongs%2C is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO.
beta-tubulin%2C preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves%2C stems%2C and flowers.
Protein kinase superfamily protein%3B FUNCTIONS IN: protein tyrosine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C active site (InterPro:IPR008266)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G30740.1)%3B Has 112305 Blast hits to 111003 proteins in 4429 species: Archae - 103%3B Bacteria - 13312%3B Metazoa - 41447%3B Fungi - 9236%3B Plants - 31753%3B Viruses - 344%3B Other Eukaryotes - 16110 (source: NCBI BLink).
Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.
Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Expressed in young dividing photosynthetic tissues. Knockout mutants are embryo lethal with arrested development at the two-cell stage. Knockout mutants have abnormal etioplasts.
Encodes a protein similar to glucose-6-phosphate dehydrogenase but%2C based on amino acid differences in the active site and lack of activity%2C does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment%2C and is not confirmed experimentally.
Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount of verbascose (as well as mannitol) whereas the levels of raffinose and stachyose remained unchanged.
One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
Tonoplast intrinsic protein%2C transports ammonium (NH3) and methylammonium across the tonoplast membrane%2C gene expression shows diurnal regulation and is upregulated by ammonium (NH3).
AGO9-dependent sRNA silencing is crucial to specify cell fate in the Arabidopsis ovule. AGO9 is expressed in reproductive companion cells but not in the associated male or female gametes or their precursors. Therefore%2C AGO9 acts non-cell autonomously to silencing the activity of TEs activity in the female gametophyte.
Protein of unknown function%2C DUF593%3B INVOLVED IN: response to salt stress%2C N-terminal protein myristoylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF593 (TAIR:AT2G30690.1)%3B Has 6872 Blast hits to 5400 proteins in 551 species: Archae - 62%3B Bacteria - 762%3B Metazoa - 3039%3B Fungi - 561%3B Plants - 730%3B Viruses - 11%3B Other Eukaryotes - 1707 (source: NCBI BLink).
BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1)%3B Has 490 Blast hits to 394 proteins in 96 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 132%3B Fungi - 88%3B Plants - 175%3B Viruses - 14%3B Other Eukaryotes - 79 (source: NCBI BLink).
CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.
Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls%2C and short%2C thick roots.
Encodes a putative 92-aa protein that is the precursor of AtPep1%2C a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2%2C both being components of the innate immune response.
encodes a GSK3/shaggy-like protein kinase. Gene expression is induced by NaCl and ABA but not KCl%2C suggesting that this gene may be involved in response to osmotic stress. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts.
nuclear DEIH-box helicase (NIH) encoding a putative RNA and/or DNA helicase homologous to a group of nucleic acid helicases from the DEAD/H family with nuclear DEIH-box helicase (NIH) distinct N- and C-terminal regions that differ from animal DEIH proteins
Fatty acid desaturase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water%3B INVOLVED IN: oxidation reduction%2C lipid metabolic process%3B CONTAINS InterPro DOMAIN/s: Fatty acid desaturase%2C type 1%2C core (InterPro:IPR015876)%2C Fatty acid desaturase%2C type 1 (InterPro:IPR005804)%3B BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06350.1)%3B Has 3432 Blast hits to 3432 proteins in 822 species: Archae - 0%3B Bacteria - 1534%3B Metazoa - 802%3B Fungi - 234%3B Plants - 106%3B Viruses - 4%3B Other Eukaryotes - 752 (source: NCBI BLink).
Patatin-related phospholipase A. Expressed strongly and exclusively in roots. AtplaIVA-null mutants have reduced lateral root development. Phosphorylation by calcium-dependent protein kinases in vitro enhances its activity.
Encodes a novel protein involved in ascorbate biosynthesis%2C which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C%2C lower level of non-photochemical quenching%2C and reduced rate of conversion of violaxanthin to zeaxanthin in high light.
Domain of unknown function (DUF23)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166)%3B BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G44670.1)%3B Has 195 Blast hits to 195 proteins in 24 species: Archae - 2%3B Bacteria - 7%3B Metazoa - 43%3B Fungi - 0%3B Plants - 139%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).
Encodes PLUTO (plastidic nucleobase transporter)%2C a member of the Nucleobase:Cation-Symporter1 protein family%2C capable of transporting purine and pyrimidine nucleobases.
Protein of unknown function (DUF626)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626%2C Arabidopsis thaliana (InterPro:IPR006462)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G19060.1)%3B Has 209 Blast hits to 208 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 209%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes a member of the MAKR (MEMBRANE-ASSOCIATED KINASE REGULATOR) gene family. MAKRs have putative kinase interacting motifs and membrane localization signals. Known members include: AT5G26230 (MAKR1)%2C AT1G64080 (MAKR2)%2C AT2G37380 (MAKR3)%2C AT2G39370 (MAKR4)%2C AT5G52870 (MAKR5) and AT5G52900 (MAKR6).
Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots%2C it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone%2C whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs%2C rate-limiting%2C specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.
ChaC-like family protein%3B CONTAINS InterPro DOMAIN/s: ChaC-like protein (InterPro:IPR006840)%3B BEST Arabidopsis thaliana protein match is: ChaC-like family protein (TAIR:AT5G26220.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
Protein of unknown function (DUF1442)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1442 (InterPro:IPR009902)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1442) (TAIR:AT1G62840.1)%3B Has 98 Blast hits to 98 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 98%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
The PAH1 gene encodes a phosphatidate phosphohydrolase. Mutant analysis revealed its involvement in galactolipid synthesis pathway%2C and the membrane lipid remodeling. The pah1pah2 double-mutant showed enhanced Al-susceptibility under low-P conditions%2C but there was no significant differences in Al tolerance between pah1pah2 and wild type when they were grown in a solution containing 35 %26#956%3BM Pi.
Protein of unknown function%2C DUF584%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF584 (TAIR:AT3G45210.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
Protein of unknown function (DUF 3339)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT3G27027.1)%3B Has 274 Blast hits to 269 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 274%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Copper transport protein family%3B BEST Arabidopsis thaliana protein match is: Copper transport protein family (TAIR:AT5G52720.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
Encodes an SP-RING domain containing protein that functions in sumolaytion and is involved in positive regulation of sulfur metabolism and stress response.
Protein of unknown function (DUF630 and DUF632)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868)%2C Protein of unknown function DUF632 (InterPro:IPR006867)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT3G60320.1)%3B Has 861 Blast hits to 735 proteins in 117 species: Archae - 0%3B Bacteria - 21%3B Metazoa - 78%3B Fungi - 83%3B Plants - 611%3B Viruses - 12%3B Other Eukaryotes - 56 (source: NCBI BLink).
Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G27790.1)%3B Has 109047 Blast hits to 108152 proteins in 3356 species: Archae - 177%3B Bacteria - 12247%3B Metazoa - 40499%3B Fungi - 11642%3B Plants - 25966%3B Viruses - 490%3B Other Eukaryotes - 18026 (source: NCBI BLink).
Encodes caffeoyl shikimate esterase and is involved in lignin biosynthesis. CSE converts caffeoyl shikimate to caffiate. Loss of function mutations have reduced lignin content and collapsed vessel elements. It is also reported to function as a lysophospholipase 2 (LysoPL2) involved in tolerance to cadmium-induced oxidative stress. Binds Acyl-CoA-binding protein 2 (ACBP2).
hydroxyproline-rich glycoprotein family protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77400.1)%3B Has 5872 Blast hits to 1129 proteins in 201 species: Archae - 0%3B Bacteria - 86%3B Metazoa - 581%3B Fungi - 299%3B Plants - 356%3B Viruses - 57%3B Other Eukaryotes - 4493 (source: NCBI BLink).
Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily%2C including CBF1%2C CBF2%2C and CBF3. This gene is involved in response to low temperature%2C abscisic acid%2C and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes%2C which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3%2C suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway.
Arabidopsis ISPH is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis. It was shown to complement the lethal phenotype of E. coli ispH mutant and is therefore most likely encodes a protein with 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity involved in the last step of mevalonate-independent isopentenyl biosynthesis. Mutant has Albino seedling.
Encodes FERRITIN 4%2C AtFER4. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage%2C but they do not constitute the major iron pool. Localize to mitochondria. Knock out mutants are not sensitive to abiotic stress.
TRAF-like family protein%3B CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974)%2C MATH (InterPro:IPR002083)%3B BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
Encodes protein that interacts with CaMV movement protein. Colocalizes in the cytoplasm with the movement protein. Has similarity to mammalian proteins (such as the rat PRA1) which have been described as rab acceptors.
Encodes enoyl-ACP reductase a component of the fatty acid synthase complex. A reduced function mutation in this gene%2C mod1%2C was found in a screen for premature cell death mutants. Mutant plants have reduced lipid level and pleiotropic morphological defects%2C including chlorotic and abnormally shaped leaves.
AT hook motif DNA-binding family protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175)%2C AT hook%2C DNA-binding motif (InterPro:IPR017956)%3B BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT2G45850.2)%3B Has 861 Blast hits to 857 proteins in 59 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 83%3B Fungi - 11%3B Plants - 756%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).
Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms%3B the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line%3B the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.
Uncharacterised protein family (UPF0497)%3B CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497%2C trans-membrane plant (InterPro:IPR006702)%2C Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (InterPro:IPR006459)%3B BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT4G15630.1)%3B Has 622 Blast hits to 622 proteins in 21 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 622%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Protein of unknown function (DUF 3339)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G50660.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
Magnesium transporter CorA-like family protein%3B FUNCTIONS IN: metal ion transmembrane transporter activity%3B INVOLVED IN: metal ion transport%2C transmembrane transport%3B LOCATED IN: membrane%3B CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein%2C CorA-like (InterPro:IPR002523)%3B BEST Arabidopsis thaliana protein match is: Magnesium transporter CorA-like family protein (TAIR:AT1G29820.2)%3B Has 240 Blast hits to 240 proteins in 100 species: Archae - 0%3B Bacteria - 173%3B Metazoa - 0%3B Fungi - 0%3B Plants - 56%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).
Encodes a permease-like protein involved in lipid transfer from the ER to the chloroplast%2C more specifically%2C transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol%2C triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.
Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.
Fatty acid desaturase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water%3B INVOLVED IN: oxidation reduction%2C lipid metabolic process%3B CONTAINS InterPro DOMAIN/s: Fatty acid desaturase%2C type 1%2C core (InterPro:IPR015876)%2C Fatty acid desaturase%2C type 1 (InterPro:IPR005804)%3B BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06360.1)%3B Has 3426 Blast hits to 3426 proteins in 822 species: Archae - 0%3B Bacteria - 1532%3B Metazoa - 799%3B Fungi - 234%3B Plants - 106%3B Viruses - 4%3B Other Eukaryotes - 751 (source: NCBI BLink).
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.
Encodes a plasodesmata-located protein involved in regulating primary root growth by controlling phloem-mediated allocation of resources between the primary and lateral root meristems.
Encodes a protein involved in cell elongation in root and anther filaments. Mutants have greater cell volumes in root tissues and have additive phenotypes with other cell expansion mutants such as those carrying mutations in COB%2C QUI and POM1 loci. POM2/CSI1 promotes Cellulose Synthase and microtubule co-alignment.
encodes a putative copper transport protein that contains copper-binding motif and functionally complements in copper-transport defective yeast strains
Encodes a plasma-membrane localized%2C copine-like protein%2C which is a member of a newly identified class of calcium-dependent%2C phospholipid binding proteins that are present in a wide range of organisms. Mutants exhibit temperature-sensitive growth defects and increased hypersensitive response where permissive conditions are low temperature (22 degrees Celsius) and low humidity. Gene is expressed at 22 but not at 28 (restrictive condition) degrees. Lethality of double mutants with BON3 can be partially suppressed by SNC1. Double mutants show defects in development that are genetically separable from hypersensitive/cell death response.
encodes an isoform of 4-coumarate:CoA ligase (4CL)%2C which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid%2C caffeic acid%2C ferulic acid%2C 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate.
Encodes a homolog of trithorax%2C a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4%2C ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1.
Uncharacterised protein family (UPF0497)%3B CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497%2C trans-membrane plant (InterPro:IPR006702)%2C Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (InterPro:IPR006459)%3B BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT3G11550.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.
vacuolar protein sorting-associated protein 2.3 (VPS2.3)%3B CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024)%3B BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G44560.1)%3B Has 1693 Blast hits to 1691 proteins in 237 species: Archae - 2%3B Bacteria - 12%3B Metazoa - 754%3B Fungi - 334%3B Plants - 366%3B Viruses - 0%3B Other Eukaryotes - 225 (source: NCBI BLink).
Encodes a U12-type spliceosomal protein that is an indispensible component of the minor spliceosome and plays a crucial role in U12 intron splicing and plant development.
