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Show all genes, phenotypes and metabolites for which the QTL profile correlates with that of the query profile above the set cut-off, the query trait is in the first row. Strongly correlating QTL profiles could indicate common regulation.
Trait ID (count=26) Type Name Pearson's Correlation Coefficient Position Description
AT3G06240 gene 1.00 3:1887043 F-box family protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated domain%2C type 1 (InterPro:IPR006527)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT4G12560.2)%3B Has 2015 Blast hits to 1993 proteins in 48 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2013%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).
AT1G54710 gene ATG18H 0.95 1:20416770 homolog of yeast autophagy 18 (ATG18) H (ATG18H)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to starvation%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046)%2C Breast carcinoma amplified sequence 3 (InterPro:IPR022175)%2C WD40 repeat (InterPro:IPR001680)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) G (TAIR:AT1G03380.1)%3B Has 852 Blast hits to 850 proteins in 188 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 369%3B Fungi - 255%3B Plants - 157%3B Viruses - 0%3B Other Eukaryotes - 67 (source: NCBI BLink).
AT5G47650 gene NUDT2 0.94 5:19310192 Encodes an ADP-ribose pyrophosphatase that confers enhanced tolerance to oxidative stress.
AT5G22450 gene 0.93 5:7436905 unknown protein%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G12560 gene CPR1 0.92 4:7441681 Encodes CPR1 (Constitutive Expresser of PR Genes 1%2C also known as CPR30)%2C a F-Box protein that functions as a negative regulator of defense response and targets resistance proteins.
AT1G05170 gene 0.92 1:1490974 Galactosyltransferase family protein%3B FUNCTIONS IN: transferase activity%2C transferring hexosyl groups%2C transferase activity%2C transferring glycosyl groups%3B INVOLVED IN: protein amino acid glycosylation%3B LOCATED IN: membrane%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C 4 leaf senescence stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 31 (InterPro:IPR002659)%3B BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT2G32430.1)%3B Has 1301 Blast hits to 1292 proteins in 94 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 677%3B Fungi - 0%3B Plants - 603%3B Viruses - 0%3B Other Eukaryotes - 21 (source: NCBI BLink).
AT5G15820 gene 0.92 5:5161724 RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G02340.1)%3B Has 8420 Blast hits to 8405 proteins in 260 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 2461%3B Fungi - 626%3B Plants - 4186%3B Viruses - 29%3B Other Eukaryotes - 1112 (source: NCBI BLink).
AT3G13550 gene FUS9 0.92 3:4423237 Encodes a protein similar to ubiquitin-conjugating enzyme (E2) variant proteins (UEV)%3B lacks catalytic cysteine residue found in ubiquitin-conjugating enzyme E2. Represses photomorphogenesis and induces skotomorphogenesis in the dark.
AT1G13450 gene GT-1 0.92 1:4612731 Encodes GT-1%2C a plant transcription factor that binds to one of the cis-acting elements%2C BoxII%2C which resides within the upstream promoter region of light-responsive genes. GT-1 was assumed to act as a molecular switch modulated through Ca(2+)-dependent phosphorylation/dephosphorylation in response to light signals.
AT5G50230 gene 0.92 5:20448310 Transducin/WD40 repeat-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C Autophagy-related protein 16 (InterPro:IPR013923)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1)%3B Has 76401 Blast hits to 35303 proteins in 1111 species: Archae - 133%3B Bacteria - 9405%3B Metazoa - 31134%3B Fungi - 15838%3B Plants - 8951%3B Viruses - 22%3B Other Eukaryotes - 10918 (source: NCBI BLink).
AT3G09560 gene PAH1 0.91 3:2934592 The PAH1 gene encodes a phosphatidate phosphohydrolase. Mutant analysis revealed its involvement in galactolipid synthesis pathway%2C and the membrane lipid remodeling. The pah1pah2 double-mutant showed enhanced Al-susceptibility under low-P conditions%2C but there was no significant differences in Al tolerance between pah1pah2 and wild type when they were grown in a solution containing 35 %26#956%3BM Pi.
AT2G33835 gene FES1 0.91 2:14311712 Encodes a zinc finger domain containing protein that is expressed in the shoot/root apex and vasculature%2C and acts with FRI to repress flowering.FES1 mutants in a Col(FRI+) background will flower early under inductive conditions.
AT5G50380 gene EXO70F1 0.91 5:20516055 A member of EXO70 gene family%2C putative exocyst subunits%2C conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes%2C which can be classified into eight clusters on the phylogenetic tree.
AT3G03210 gene 0.91 3:740704 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B Has 59 Blast hits to 59 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 56%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).
AT4G11860 gene 0.91 4:7133896 FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cytosol%2C nucleus%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF544 (InterPro:IPR007518)%2C Ubiquitin interacting motif (InterPro:IPR003903)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF544) (TAIR:AT4G22960.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT1G16240 gene SYP51 0.91 1:5554843 Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.
AT4G27350 gene 0.90 4:13690645 Protein of unknown function (DUF1223)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1223 (InterPro:IPR010634)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1223) (TAIR:AT5G54240.1)%3B Has 527 Blast hits to 527 proteins in 230 species: Archae - 0%3B Bacteria - 439%3B Metazoa - 0%3B Fungi - 4%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 38 (source: NCBI BLink).
AT1G68340 gene 0.90 1:25613926 Protein of unknown function (DUF1639)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G25370.1)%3B Has 250 Blast hits to 250 proteins in 17 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 2%3B Fungi - 0%3B Plants - 246%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G17640 gene 0.90 1:6067086 RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G13224.2)%3B Has 513802 Blast hits to 488537 proteins in 21806 species: Archae - 10521%3B Bacteria - 302893%3B Metazoa - 102492%3B Fungi - 14718%3B Plants - 34458%3B Viruses - 34904%3B Other Eukaryotes - 13816 (source: NCBI BLink).
AT3G26950 gene 0.90 3:9941107 unknown protein%3B Has 27 Blast hits to 27 proteins in 8 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 27%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT5G21040 gene FBX2 0.90 5:7144829 Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses. Its expression is responsive to phosphate (Pi) and not phosphite (Phi) in roots and shoots.
AT3G55730 gene MYB109 0.90 3:20681827 putative transcription factor MYB109 (MYB109) mRNA%2C
AT5G41800 gene 0.90 5:16733663 Transmembrane amino acid transporter family protein%3B FUNCTIONS IN: amino acid transmembrane transporter activity%3B INVOLVED IN: amino acid transport%3B LOCATED IN: plasma membrane%2C membrane%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Amino acid transporter%2C transmembrane (InterPro:IPR013057)%3B BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT1G08230.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G46250 gene LARP6a 0.90 5:18755280 RNA-binding protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: RNA processing%3B LOCATED IN: ribonucleoprotein complex%2C nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C RNA-binding protein Lupus La (InterPro:IPR006630)%2C Lupus La protein (InterPro:IPR002344)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT3G19090.1)%3B Has 1603 Blast hits to 1601 proteins in 212 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 875%3B Fungi - 249%3B Plants - 311%3B Viruses - 0%3B Other Eukaryotes - 164 (source: NCBI BLink).
AT4G24740 gene FC2 0.90 4:12754489 a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro%2C interaction modulated by phosphorylation of the proteins.
AT2G43020 gene PAO2 0.90 2:17891503 Encodes a polyamine oxidase.