On this website we share the results of the TKI project Visual analytics for plant pangenomes with our project partners.

Deliverables

• Design document
• Prototype implementation
  • Pectobacterium demo: http://vapp1.win.tue.nl/pecto
    • GitHub code - branch pectobacterium: https://github.com/astridvandenbrandt/PanVA
    • Click here to download the data
  • Arabidopsis demo: http://vapp1.win.tue.nl/arabidopsis
    • GitHub code - branch arabidopis: https://github.com/astridvandenbrandt/PanVA
    • Click here to download the data
  • Design study paper: van den Brandt et al. PanVA: Variant Analysis within Pangenomes. Submitted to IEEE Transactions on Visualization and Computer Graphics. [Preprint]
  • Workshop for end users [TBD]