Examples of similar sequences

These similar sequences can be a number of sequences ( not more than 2000), and they should be in FASTA format, and their description are ruled as: >sequence-name|genotype|tissue|unigene

The textarea can be input other similar sequences to the seed sequence. As well all sequences are from user specific input,and the process will be done only on these sequences.

The first example: Only process user specific input:

>DQ002569|Triticum-monococcum|2-H12
TCGAGCCAGGTCTCCTTCCAACAGCCTCAGCAACAATATCCATTAGGCCAGGGCTCCTTCCGGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002570|Triticum-monococcum|2-H11
TCGAGCCAGGTCTCCTTCCAACAGCCTCAGCAACAATATCCATTAGGCCAGGGCTCCTTCCGGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002571|Triticum-monococcum|2-G12
TCGAGCCAGGTCTCCTTCCAACAGCCTCAGCAACAATATCCATTAGGCCAGGGCTCCTTCCGGCCATCTCAGCAAAACCCACAGGCCCAGGGCTTTGTCCAGCCTCAACAACTGCCC
>DQ002572|Triticum-monococcum|2-G05
TCGAGCCAGGTCTCCTTCCAACAGCCTCAGCAACAATATCCATTAGGCCAGGGCTCCTTCCGGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002573|Triticum-monococcum|2-E07
TCGAGCCAGGTCTCCTTCCAACAGCCTCAGCAACAATATCCATTAGGCCAGGGCTCCTTCCGGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002574|Triticum-monococcum|1-H09
TCGAGCCAGGTCTCCTTCCAACAGCCTCAGCAACAATATCCATTAGGCCAGGGCTTCTTCCGGCCATCTCAGCAAAACCCACAGGCCCAGGGCTTTGTCCAGCCTCAACAACTGCCC
>DQ002575|Triticum-monococcum|1-G11
TCGAGCCAGGTCTCCTTCCAACAGCCTCAGCAACAATATCCATTAGGCCAGGGCTCCTTCCGGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002576|Triticum-monococcum|1-F11
TCGAGCCAGGTCTCCTTCCAACAGCCTCAGCAACAATATCCATTAGGCCAGGGCTCCTTCCGGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002577|Triticum-monococcum|1-F10
TCGAGCCAGGTCTCCTTCCAACAGCCTCAGCAACAATATCCATTAGGCCAGGGCTCCTTCCGGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002578|Triticum-monococcum|1-F08
TCGAGCCAGGTCTCCTTCCAACAGCCTCTGCAACAATATCCATTAGGCCAGGGCTCCTTCCGGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002579|Triticum-monococcum|1-D08
TCGAGCCAGGTCTCCTTCCAACAGCCTCAGCAACAATATCCATTAGGCCAGGGCTTCTTCCGGCCATCTCAGCAAAACCCACAGGCCCAGGGCTTTGTCCAGCCTCAACAACTGCCC
>DQ002580|Triticum-monococcum|1-D05
TCGAGCCAGGTCTCCTTCCAACAGCCTCAGCAACAATATCCATTAGGCCAGGGCTCCTTCCGGCCATCTCAGCAAAACCCACAGGCCCAGGGCTTTGTCCAGCCTCAACAACTGCCC
>DQ002581|Triticum-monococcum|1-C05
TCGAGCCAGGTCTCCTTCCAACAGCCTCAGCAACAATATCCATTAGGCCAGGGCTCCTTCCGGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002582|Triticum-monococcum|1-C03
TCGAGCCAGGTCTCCTTCCAACAGCCTCAGCAACAATATCCATTAGGCCAGGGCTCCTTCCGGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002583|Triticum-monococcum|1-B01
TCGAGCCAGGTCTCCTTCCAACAGCCTCAGCAACAATATCCATTAGGCCAGGGCTCCTTCCGGCCATCTCAGCAAAACCCACAGGCCCAGGGCTTTGTCCAGCCTCAACAACTGCCC
>DQ002584|Aegilops-speltoides|21-H02
TCGAGCCAGGTCTCCTACCAGCAGCCTCAGCAGCAATATCCATCAGGCCAGGTCTCGTTCCAGCCATCTCAGCAAAACCCACAGGCCCAGGGCTTTGCGCAACCTCAGCAACTGCCC
>DQ002585|Aegilops-speltoides|21-C05
TCGAGCCAGGTCTCCTACCAGCAGCCTCAGCAACAATATCCATCAGGGCAGGTCTCCTTCCAGCCATCTCAGCAAAACCCACAGGCCCAGGGCTTTGTGCAACCTCAGCAACTGCCC
>DQ002586|Aegilops-speltoides|23-H05
TCGAGCCAGATCTCCCTCCAGCAGCCTCAACAACAATATCCATCAGGCCAAGGCTCCTTCCAGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTACCC
>DQ002587|Aegilops-speltoides|23-H02
TCGAGCCAGGTCTCCTACCAGCAGCCTCAACAACAATATCCATCAGGCCAGGTCTCCTTCCAGCCATCTCAGCAAAACCCACAGGCCCAGGGCTTTGTGCAACCTCAGCAACTGCCC
>DQ002588|Aegilops-speltoides|23-G09
TCGAGCCAGGTCTCCTACCAGCAGCCTCAGCAACAATATCCATCGGGCCAGGGCTCCTTCCAGCCATCTCAGCAGAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTTCCC
>DQ002589|Aegilops-tauschii|10719-24
TTGAGCCAGGTCTCCTTCCAACAACCTCAACAACAATATCCATCAGGCCAGGGCTCCTTCCAGCCATCTCAGCGAAACCCACAGGCCCAAGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002590|Aegilops-tauschii|10719-23
TTGAGCCAGGTCTCCTTCCAACAACCTCAACAACAATATCCATCAGGCCAGGGCTCCTTCCAGCCATCTCAGCAAAACCCACAGGCCCAAGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002591|Aegilops-tauschii|10719-22
TTGAGCCAGGTCTCCTTCCAACAGCCTCAACAACAATATCCATCAGGCCAGGGCTCCTTCCAGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002592|Aegilops-tauschii|10719-20
TTGAGCCAGGTCTCCTTCCAACAGCCTCAACAACAATATCCATCAGGCCAGGGCTCCTTCCAGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002593|Aegilops-tauschii|10719-19
TTGAGCCAGGTCTCCTTCCAACAGCCTCAACAACAATATCCATCAGGCCAGGGCTCCTTCCAGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002594|Aegilops-tauschii|10719-17
TTGAGCCAGGTCTCCTTCCAACAGCCTCAACAACAATATCCATCAGGCCAGGGCTCCTTCCAGCCATCTCAGCAAAACCCACAGGCCCAAGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002595|Aegilops-tauschii|10719-11
TTGAGCCAGGTCTCCTTCCAACAGCCTCAACAACAATATCCATCAGGCCAGGGCTCCTTCCAGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAGCTGCCC
>DQ002596|Aegilops-tauschii|10719-05
TTGAGCCAGGTCTCCTTCCAACAGCCTCAACAACAATATCCATCAGGCCAGGGCTCCTTCCAGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002597|Aegilops-tauschii|8-C10
TTGAGCCAGGTCTCCTTCCAACAGCCCCAACAACAATATCCATCAGGCCAGGGCTCCTTCCAGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002598|Aegilops-tauschii|2-C07
TTGAGCCAGGTCTCCTTCCAACAGCCTCAACAACAATGTCCATCAGGCCAGGGCTCCTTCCAGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTGCCC
>DQ002599|Aegilops-tauschii|2-C01
TTGAGCCAGGTCTCCTTCCAACAGCCTCAACAACAATATCCATCAGGCCAGGGCTCCTTCCAGCCATCTCAGCAAAACCCACAGGCCCAGGGCTCTGTCCAGCCTCAACAACTGCCC

Note: These sequences should be input by the textarea of "other similiar sequences".

Don't need to select a database. The process will be done only on these sequences.

Please set Similarity for CAP3 alignment to 75%, it can get the same picture in our paper.

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The second example: other sequences similar to the seed from APPLE dataset follows:

>AY789237|Prima|leaf|unknown
ATGGGTGTCTGCACATTTGAGAACGAGTTCACCTCTGAGATTCCACCATCAAGATTGTTC
AAGGCCTTTGTCCTTGATGCTGACAACCTCATCCCCAAGATTGCACCCCAGGCAATCAAG
CAAGCTGAAATCCTTGAAGGAAACGGTGGCCCCGGAACCATCAAGAAGATCACTTTTGGT
GAAGGCAGCCAGTACGGCTACGTGAAGCACAGGATTGACTCGATTGACGAAGCAAGCTAC
TCATACTCCTACACTTTGATTGAAGGAGATGCTTTGACAGACACCATCGAGAAAATATCT
TACGAGACCAAGTTGGTGGCATGTGGAAGTGGTTCCACCATCAAGAGCATCAGTCATTAC
CACACCAAGGGAAACATTGAAATCAAGGAAGAGCACGTCAAGGCTGGAAAAGAGAAGGCC
CATGGTTTGTTCAAGCTTATTGAGAGCTACCTTAAGGACCACCCCGACGCATACAACTAA
>AY789238|Fiesta|leaf|unknown
ATGGGTGTCTGCACATTTGAGAACGAGTTCACCTCTGAGATTCCACCATCAAGATTGTTC
AAGGCCTTTGTCCTTGATGCTGACAACCTCATCCCCAAGATTGCACCCCAGGCAATCAAG
CAAGCTGAAATCCTTGAAGGAAACGGTGGCCCCGGAACCATCAAGAAGATCACTTTTGGT
GAAGGCAGCCAGTACGGCTACGTGAAGCACAGGATTGACTCAATTGACGAAGCAAGCTAC
TCATACTCCTACACTTTGATTGAAGGAGATGCTTTGACAGACACCATCGAGAAAATATCT
TACGAGACCAAGTTGGTGGCATGTGGAAGTGGTTCCACCATCAAGAGCATCAGTCATTAC
CACACCAAGGGAAACATTGAAATCAAGGAAGAGCACGTCAAGGCTGGAAAAGAGAAGGCC
CATGGTTTGTTCAAACTTATTGAGAGCTACCTTAAGGACCACCCCGACGCATACAACTAA
>AY789240|Prima|leaf|unknown
ATGGGTGTCTACACATTTGAGAACGAGTACACCTCTGAGATTCCACCACCAAGATTGTTC
AAGGCCTTTGTCCTCGATGCTGATAACCTCATCCCCAAGATTGCACCCCAGGCAATCAAG
CATGCTGAGATCCTTGAAGGAGACGGTGGCCCTGGAACCATCAAAAAGATCACTTTTGGT
GAAGGTAGCCAATACGGCTACGTGAAGCACAAGATCGACTCGGTTGACGAGGCAAACTAC
TCATACGCCTACACTTTGATTGAAGGAGATGCTTTGACAGACACCATTGAGAAGGTCTCT
TACGAGACCAAGTTGGTGGCATCTGGAAGTGGTTCCATCATCAAGAGTATCAGCCACTAC
CACACCAAGGGTGATGTTGAGATCAAGGAAGAGCACGTCAAGGCTGGCAAAGAGAAGGCT
CATGGTTTGTTCAAGCTTATTGAGAGCTACCTTAAGGGCCACCCCGACGCATACAACTAA
>AY789241|Fiesta|leaf|unknown
ATGGGTGTCTACACATTTGAGAACGAGTACACCTCTGAGATTCCACCACCAAGATTGTTC
AAGGCCTTTGTCCTCGATGCTGATAACCTCATCCCCAAGATTGCACCCCAGGCAATCAAG
CATGCTGAGATCCTTGAAGGAGACGGTGGCCCTGGAACCATCAAAAAGATCACTTTTGGT
GAAGGTAGCCAATACGGCTACGTGAAGCACAAGATCGACTCGGTTGACGAGGCAAACTAC
TCATACGCCTACACTTTGATTGAAGGAGATGCTTTGACAGACACCATTGAGAAGGTCTCT
TACGAGACCAAGTTGGTGGCATCTGGAAGTGGTTCCATCATCAAGAGTATCAGCCACTAC
CACACCAAGGGTGATGTTGAGATCAAGGAAGAGCACGTCAAGGCTGGCAAAGAGAAGGCT
CATGGTTTGTTCAAGCTTATTGAGAGCTACCTTAAGGGCCACCCCGACGCATACAACTAA

Note: These sequences similar to the seed sequence are from apple dataset as well, please select Malus x domestica(apple tree) database.

Notes

The rule for annotation information of these sequences is same to that of the seed sequence.

The number of similar or homologous sequences submitted by "Other similar sequences" is limited (not more than 2000). If you want to process sequences more than 2000, please contact us: mail webmaster@bioinformatics.nl.