EMBOSS explorer

fprotdist

Protein distance algorithm (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
Number of substitution rate categories
Rate for each category
File of substitution rate categories:
Weights file:
Additional section
Choose the method to use
Rate variation among sites
Coefficient of variation of substitution rate among sites
Coefficient of variation of substitution rate among sites
Choose the category to use
Which genetic code
Prob change category (1.0=easy)
Transition/transversion ratio
Base frequencies for A C G T/U (use blanks to separate)
Output section
Print data at start of run?
Print indications of progress of run?
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.