Lin and groups A probes..
This is a picture of Lin's miniprep gel,
which was later used in a Southern hybridisation step.
Lin used ApE to calculate the sizes of the fragments in the Lambda BamHI + EcoRI
digest which was run in lane L.
And she uses the BamHI-EcoRI restriction map of Lambda DNA (see the Lambda
DNA page of the SCLResources site)..
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To decide which probe to use to get more
information about her recombinant clones, she shows in this picture two of the
various possibilities.
Situations A and B show the DNA bands which give a Southern hybridisation
signal when the blot, made from this gel, is hybridised using the following
group A probes:
A. a mixture of probes 75 and 40 (= a mix of PCR-amplified inserts of clones pGTλ3775 and pGTλ3240)
B. a mixture of probes 58 and 64 (= a mix of PCR-amplified inserts of clones pGTλ3758 and pGTλ2564)
In situation A she will identify inserts in her
clones 1,3 and 7, and confirm the 3240 bp insert in clone 4.
In situation B she will identify inserts in her clones 1,3 and 7, and confirm
the 2564 bp insert in clone 8.
Her Lambda digest in lane L was not
heated at 70 C before loading the gel slot, so she expects the presence of some cos-site containing fragments (J). The cos-ends
containing fragments may join to each other by forming the cos-site and
form bigger (cos-site containing) fragments. These ones (K)
did not, and still have their free cos-end. Others have formed the bigger
cos-site containing molecules present in this (J)
band.
Note: this bigger fragment can be cloned and actually, Lin found it as an
insert in her clone 5.. (L).