This folder contains the data and the results discussed in the paper entitled 
"Efficient Inference of Homologs in Large Eukaryotic Pan-proteomes", and
a script to reproduce the results.

There are four folders ecoli, yeast, arabidopsis and orthobench,
each of which contains a folder comtaining proteomes, the homology groups
detected by PanTools, OrthoFinder and PanX, and the evaluation script.
To reproduce the results of the paper, for each dataset run:
> bash evaluate.sh