This tool allows filtering of your FASTA protein input using the "Screening methods" below.
Screening parameters for a method become visible upon its selection.
If you are new to the external predictors, you can find links under "Output file parsing" below as well as under the
icon for Screening methods or the respective method section itself.
Available methods are:
- Direct screening: filtering on 1) composition/pattern and 2) iso-electric point.
- Output file parsing: analysis of 3) SignalP,
4) TMHMM and
5) big-PI (metazoa, protozoa,
fungi
or plants)
results after uploading the respective output files.
You run these predictors on their own sites, save the output and upload it here. Links to these site are present under the icon.
Double clicking on a protein in the output page yields a pop-up window to produce an amino-acid composition graph.
ProFASTA output can be saved as text.
For information and example usage, see our article in Fungal Genetics and Biology.
For help, click
in the table below.
