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SEQATOMs Similarity Searching: Protein BLAST |
Here, you can BLAST against the masked versions of the PDB, CATH and DisProt databases. The special features are the "Alignment Options" and "Output Options" (see below). The "Masking character" is used to visualize the "missing" residues. In case of DisProt, these are the regions annotated as disorded by DisProt. You can choose the number of hits displayed in the alignment graphic to get an idea of the overlap of missing regions among the hits. Missing regions are indicated in the graph by gray boxes. More... Please cite: Brandt, B.W., Heringa, J. and Leunissen, J.A.M. (2008). SEQATOMS: a web tool for identifying missing regions in PDB in sequence context. Nucleic Acids Reseach 36:W255-W259. |
Version 1.0 SEQATOMs; Last Modified 09 Aug, 2023 by BB |