>contig_1 potential-SNP:8 real-SNP:8 true-SNP:4 error-SNP:4
location info:	    278 456 591 669 773 863 878 912
first base(most frequent): C C C G A G - A 
the number of first base : 3 5 5 6 6 3 4 3 
second base(2th frequent): T T T T C A G G 
the number of second base: 2 2 3 2 2 3 2 2 
SNP confidence score     : 5 5 5 5 1 4 1 4 
SNP quality from contigs : 5 15 10 20 20 0 -1 5 
Inter-SNP[2]&intra-SNP[1]: 2 2 2 2 0 1 1 1 
SNP type                 : 2 2 2 2 -1 -1 -1 -1 
major allele haplotype   : 1.0 2.0 2.0 2.0 2.0 1.0 1.0 0.0 
minor allele haplotype   : 1.0 1.0 1.0 1.0 0.0 0.0 0.0 1.0 
>contig_5 potential-SNP:9 real-SNP:9 true-SNP:6 error-SNP:3
location info:	    182 344 368 447 575 605 728 743 800
first base(most frequent): T G G C T A A G T 
the number of first base : 5 5 5 5 5 5 4 5 3 
second base(2th frequent): C C A A C G T C - 
the number of second base: 2 2 2 2 2 2 2 2 2 
SNP confidence score     : 5 5 5 5 5 5 1 1 1 
SNP quality from contigs : 15 15 15 15 15 15 0 15 5 
Inter-SNP[2]&intra-SNP[1]: 1 1 1 1 1 1 1 1 1 
SNP type                 : 2 2 2 2 2 2 -1 -1 -1 
major allele haplotype   : 2.0 2.0 2.0 2.0 2.0 2.0 1.0 0.0 0.0 
minor allele haplotype   : 1.0 1.0 1.0 1.0 1.0 1.0 0.0 0.0 0.0 
>contig_6 potential-SNP:49 real-SNP:46 true-SNP:22 error-SNP:24
location info:	    14 79 80 81 82 83 84 85 86 87 88 89 90 98 103 143 324 413 435 510 531 586 616 661 679 696 770 796 798 799 800 801 802 812 822 823 824 825 826 827 828 829 830 831 832 833
first base(most frequent): A - - A G G A A G C A G C A T - G G C G C T G A A - T A - G T T G T A T A A A A A A A A A A 
the number of first base : 4 8 8 6 6 7 8 7 9 8 9 9 10 10 11 13 8 11 8 8 8 11 12 11 12 12 13 10 8 10 10 8 11 11 6 6 6 6 6 6 6 6 6 6 6 6 
second base(2th frequent): C G A - - - - - - - - - - G A C A A T A T C T - T A G T A T G G A G T A T T G G T G G C T T 
the number of second base: 3 3 3 5 5 4 4 4 3 3 3 3 2 3 4 2 7 4 7 7 7 4 3 4 3 3 2 3 3 3 2 3 2 2 4 4 4 4 4 4 4 4 4 4 4 4 
SNP confidence score     : 2 5 5 5 5 5 5 5 5 5 5 5 5 4 4 5 5 5 5 5 5 5 5 5 5 2 3 2 2 2 2 2 1 2 3 3 3 3 3 3 3 3 3 3 3 3 
SNP quality from contigs : 10 -1 -1 10 10 10 25 10 35 20 35 35 45 40 40 -1 10 40 0 10 10 40 50 40 50 -1 50 40 -1 40 35 25 60 50 20 10 10 10 10 10 10 10 10 10 10 10 
Inter-SNP[2]&intra-SNP[1]: 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 2 2 2 2 2 2 2 2 2 2 2 2 2 
SNP type                 : -1 2 2 2 2 2 2 2 2 2 2 2 -1 2 2 -1 2 2 2 2 2 2 2 2 2 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 
major allele haplotype   : 0.0 4.0 4.0 3.0 3.0 3.0 4.0 3.0 4.0 3.0 4.0 4.0 4.0 5.0 5.0 6.0 3.0 5.0 3.0 3.0 3.0 5.0 5.0 4.0 2.0 1.0 0.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 
minor allele haplotype   : 0.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 1.0 1.0 1.0 1.0 0.0 1.0 1.0 0.0 3.0 2.0 2.0 3.0 3.0 2.0 1.0 2.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 
>contig_8 potential-SNP:6 real-SNP:6 true-SNP:5 error-SNP:1
location info:	    578 623 730 731 732 860
first base(most frequent): G G A C A C 
the number of first base : 2 2 2 2 2 2 
second base(2th frequent): T T T A C - 
the number of second base: 2 2 2 2 2 2 
SNP confidence score     : 5 5 2 2 2 1 
SNP quality from contigs : 0 0 0 0 0 0 
Inter-SNP[2]&intra-SNP[1]: 0 0 0 0 0 0 
SNP type                 : 2 2 2 2 2 -1 
major allele haplotype   : 1.0 1.0 1.0 1.0 1.0 1.0 
minor allele haplotype   : 1.0 1.0 1.0 1.0 1.0 1.0 
>contig_12 potential-SNP:19 real-SNP:6 true-SNP:5 error-SNP:1
location info:	    259 412 526 583 640 739
first base(most frequent): A T A A A G 
the number of first base : 3 3 3 3 3 3 
second base(2th frequent): C C G C G C 
the number of second base: 2 2 2 2 2 2 
SNP confidence score     : 5 5 5 5 5 5 
SNP quality from contigs : 30 0 30 0 0 0 
Inter-SNP[2]&intra-SNP[1]: 2 2 2 2 2 2 
SNP type                 : -1 2 2 2 2 2 
major allele haplotype   : 0.0 1.0 1.0 1.0 1.0 1.0 
minor allele haplotype   : 1.0 1.0 1.0 1.0 1.0 1.0 
>contig_13 potential-SNP:15 real-SNP:12 true-SNP:8 error-SNP:4
location info:	    80 81 82 83 84 85 86 87 91 92 93 794
first base(most frequent): - - - - - - - - C A T G 
the number of first base : 2 2 2 2 2 2 2 2 4 4 4 2 
second base(2th frequent): G C T C G C T A A G G T 
the number of second base: 2 2 2 2 2 2 2 2 2 2 2 2 
SNP confidence score     : 5 5 5 5 5 5 5 5 2 2 2 1 
SNP quality from contigs : -1 -1 -1 5 5 5 5 5 5 5 5 15 
Inter-SNP[2]&intra-SNP[1]: 1 1 1 1 1 1 1 1 1 1 1 1 
SNP type                 : 2 2 2 2 2 2 2 2 -1 -1 -1 -1 
major allele haplotype   : 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 2.0 2.0 0.0 
minor allele haplotype   : 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 0.0 0.0 0.0 0.0 
>contig_15 potential-SNP:9 real-SNP:7 true-SNP:3 error-SNP:4
location info:	    81 82 83 656 771 783 784
first base(most frequent): C G G A T T A 
the number of first base : 2 2 2 3 2 2 2 
second base(2th frequent): - - - - G A - 
the number of second base: 2 2 2 2 2 2 2 
SNP confidence score     : 5 5 5 1 1 1 1 
SNP quality from contigs : 0 5 5 10 5 5 5 
Inter-SNP[2]&intra-SNP[1]: 1 1 1 1 1 1 1 
SNP type                 : 2 2 2 -1 -1 -1 -1 
major allele haplotype   : 1.0 1.0 1.0 1.0 0.0 0.0 0.0 
minor allele haplotype   : 1.0 1.0 1.0 0.0 0.0 0.0 0.0 
>contig_16 potential-SNP:28 real-SNP:19 true-SNP:8 error-SNP:11
location info:	    18 83 84 85 86 87 88 89 90 779 784 789 799 824 834 882 886 887 891
first base(most frequent): A - - - G T C T C G G A T G A G T A G 
the number of first base : 3 5 5 5 4 5 7 7 7 9 8 10 10 9 9 8 8 7 5 
second base(2th frequent): C G T C - - - - - A A G A A - A C T A 
the number of second base: 2 3 3 3 4 4 2 2 2 3 4 2 2 3 3 2 2 2 4 
SNP confidence score     : 1 5 5 5 5 5 5 5 5 3 3 1 1 3 3 2 1 1 3 
SNP quality from contigs : 5 -1 -1 -1 5 10 30 40 40 40 30 60 35 35 35 25 35 20 0 
Inter-SNP[2]&intra-SNP[1]: 2 2 2 2 2 2 2 2 2 2 2 0 0 2 2 2 2 2 1 
SNP type                 : -1 2 2 2 2 2 2 2 2 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 
major allele haplotype   : 0.0 4.0 4.0 4.0 2.0 2.0 4.0 4.0 4.0 1.0 0.0 0.0 1.0 1.0 1.0 0.0 0.0 0.0 0.0 
minor allele haplotype   : 0.0 1.0 1.0 1.0 3.0 3.0 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 
>contig_23 potential-SNP:9 real-SNP:8 true-SNP:3 error-SNP:5
location info:	    767 789 1155 1208 1209 1231 1255 1375
first base(most frequent): - A C T - A G A 
the number of first base : 7 7 7 7 7 7 6 4 
second base(2th frequent): A - G G T T A - 
the number of second base: 2 2 2 2 2 2 3 2 
SNP confidence score     : 5 1 5 2 1 5 2 2 
SNP quality from contigs : -1 30 30 20 -1 30 20 10 
Inter-SNP[2]&intra-SNP[1]: 1 1 1 1 1 1 1 1 
SNP type                 : 2 -1 2 -1 -1 2 -1 -1 
major allele haplotype   : 2.0 3.0 3.0 3.0 3.0 2.0 2.0 0.0 
minor allele haplotype   : 1.0 0.0 1.0 0.0 0.0 1.0 0.0 0.0 
