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ALIGNMENT
extractalign
ALIGNMENT CONSENSUS
cons
consambig
megamerger
merger
ALIGNMENT DIFFERENCES
diffseq
ALIGNMENT DOT PLOTS
dotmatcher
dotpath
dottup
polydot
ALIGNMENT GLOBAL
est2genome
needle
needleall
stretcher
ALIGNMENT LOCAL
matcher
seqmatchall
supermatcher
water
wordfinder
wordmatch
ALIGNMENT MULTIPLE
edialign
emma
infoalign
plotcon
prettyplot
showalign
tranalign
DATA RESOURCES
dbtell
servertell
showdb
showserver
DATA RETRIEVAL
codcopy
seqret
DATA RETRIEVAL CHEMISTRY DATA
infobase
inforesidue
DATA RETRIEVAL FEATURE DATA
featcopy
featmerge
DATA RETRIEVAL ONTOLOGY DATA
edamdef
edamhasinput
edamhasoutput
edamisformat
edamisid
edamname
godef
goname
ontoget
ontogetcommon
ontogetdown
ontogetobsolete
ontogetroot
ontogetsibs
ontogetup
ontoisobsolete
ontotext
DATA RETRIEVAL RESOURCE DATA
drfinddata
drfindformat
drfindid
drfindresource
drget
drtext
DATA RETRIEVAL SEQUENCE DATA
abiview
coderet
entret
extractalign
infoalign
infoseq
refseqget
seqxref
seqxrefget
showalign
variationget
whichdb
DATA RETRIEVAL SEQUENCE DATA ASSEMBLY DATA
assemblyget
infoassembly
DATA RETRIEVAL TEXT DATA
drtext
entret
ontotext
textget
textsearch
xmltext
DATA RETRIEVAL URL DATA
urlget
DATA RETRIEVAL XML DATA
xmlget
DISPLAY
abiview
cirdna
iep
lindna
pepinfo
pepnet
pepwheel
plotorf
prettyplot
prettyseq
remap
showfeat
showpep
sixpack
DOCUMENTATION
seealso
tfm
wossdata
wossinput
wossname
wossoperation
wossoutput
wossparam
wosstopic
EDIT
aligncopy
aligncopypair
biosed
codcopy
cutseq
degapseq
descseq
entret
extractalign
extractfeat
extractseq
featcopy
featmerge
featreport
feattext
listor
makenucseq
makeprotseq
maskambignuc
maskambigprot
maskfeat
maskseq
newseq
nohtml
noreturn
nospace
notab
notseq
nthseq
nthseqset
pasteseq
revseq
seqcount
seqret
seqretsetall
seqretsplit
sizeseq
skipredundant
skipseq
splitsource
splitter
trimest
trimseq
trimspace
union
vectorstrip
yank
ENZYME KINETICS
findkm
FEATURE TABLES
extractfeat
maskfeat
showfeat
twofeat
NUCLEIC 2D STRUCTURE
banana
btwisted
einverted
sirna
NUCLEIC CODON USAGE
cai
chips
codcmp
codcopy
cusp
syco
NUCLEIC COMPOSITION
banana
btwisted
chaos
compseq
dan
density
freak
isochore
wordcount
NUCLEIC CPG ISLANDS
cpgplot
cpgreport
geecee
newcpgreport
newcpgseek
NUCLEIC FUNCTIONAL SITES
marscan
sirna
trimest
NUCLEIC GENE FINDING
checktrans
getorf
marscan
plotorf
showorf
sixpack
syco
tcode
wobble
NUCLEIC MOTIFS
dreg
fuzznuc
fuzztran
NUCLEIC MUTATION
msbar
shuffleseq
NUCLEIC PRIMERS
eprimer3
eprimer32
primersearch
stssearch
NUCLEIC PROFILES
profit
prophecy
prophet
NUCLEIC PROPERTIES
banana
btwisted
dan
NUCLEIC REPEATS
einverted
equicktandem
etandem
palindrome
NUCLEIC RESTRICTION
recoder
redata
remap
restover
restrict
showseq
silent
NUCLEIC TRANSCRIPTION
jaspscan
marscan
tfscan
NUCLEIC TRANSLATION
backtranambig
backtranseq
checktrans
coderet
plotorf
prettyseq
remap
showorf
showseq
sixpack
transeq
ONTOLOGY
ontocount
ontoget
ontogetcommon
ontogetdown
ontogetobsolete
ontogetroot
ontogetsibs
ontogetup
ontoisobsolete
ontotext
ONTOLOGY EDAM
drfinddata
drfindformat
drfindid
drfindresource
edamdef
edamhasinput
edamhasoutput
edamisformat
edamisid
edamname
wossdata
wossinput
wossoperation
wossoutput
wossparam
wosstopic
ONTOLOGY GO
godef
goname
ONTOLOGY TAXONOMY
taxget
taxgetdown
taxgetrank
taxgetspecies
taxgetup
PHYLOGENY MOLECULAR SEQUENCE
distmat
PROTEIN 2D STRUCTURE
garnier
helixturnhelix
pepcoil
pepnet
pepwheel
PROTEIN 3D STRUCTURE
psiphi
PROTEIN COMPOSITION
backtranambig
backtranseq
compseq
emowse
freak
mwcontam
mwfilter
oddcomp
pepdigest
pepinfo
pepstats
wordcount
PROTEIN DOMAINS
helixturnhelix
pepcoil
PROTEIN FUNCTIONAL SITES
sigcleave
tmap
PROTEIN MOTIFS
antigenic
epestfind
fuzzpro
fuzztran
patmatdb
patmatmotifs
preg
pscan
sigcleave
PROTEIN MUTATION
msbar
shuffleseq
PROTEIN PROFILES
profit
prophecy
prophet
PROTEIN PROPERTIES
charge
hmoment
iep
octanol
pepinfo
pepstats
pepwindow
pepwindowall
UTILS
embossdata
embossversion
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