Current Assembly and Official Gene Set
Version 1
| Files v1 | Description |
|---|---|
| HINC_NIJ6_V1_scaffolds.fa.gz | Hirschfeldia incana v1 genome assembly |
| HINC_NIJ6_V1_genes.gff3.gz | Hirschfeldia incana v1 annotation as submitted to NCBI 32,313 genes; 38,706 transcripts |
| HINC_NIJ6_V1_protein.faa.gz | Hirschfeldia incana v1 proteome 38,706 proteins |
| HINC_NIJ6_V1_repeats.gff.gz | Hirschfeldia incana v1 repeats |
| HINC_NIJ6_V1_genes_presubmission.gff3.gz | Hirschfeldia incana v1 annotation (presubmission) Used for genome manuscript |
| H_incana_chloroplast.fa.gz | Chloroplast assembly as submitted to NCBI; 1 contig; 152,980 bp |
| H_incana_chloroplast_annotation_ncbi_submitted.gff3 | Chloroplast annotation as submitted to NCBI; 130 genes (8 rRNA; 37 tRNA; 85 protein-coding) |
| H_incana_mitochondrion.fa.gz | Mitochondrial assembly (presubmission); 1 contig; 252,930 bp |
TBD | Mitochondrial annotation (presubmission); XXX genes (X rRNA; X tRNA; XX protein-coding) |
The nuclear genome assembly and annotation, as well as the chloroplast assembly and annotation have been submitted to GenBank and will be made available upon publication (GenBank accession number: JABCMI000000000).
The first glimpse of the genome (deprecated)
Version 0.1
| Files v0.1 | Description |
|---|---|
| Hinc_assembly.fasta.gz | Hirschfeldia incana v0.1 genome assembly |
| Hinc_tentative.gff | Hirschfeldia incana tentative genelist |
| Hinc_likely.gff | Hirschfeldia incana likely genelist |
| Supplementary Table 1 | Supplementary Table 1 - Filtered results of the orthology analyses |
| Supplementary Table 2 | Supplementary Table 2 - Results of the GO enrichment analyses |