Interaction network for c5_06820
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Show the eQTL profiles of traits with a LOD score above the threshold at the selected locus.
Trait (count=24) Type Name LOD score Position Description
AT5G19290 gene 16.66 5:06493826 alpha/beta-Hydrolases superfamily protein%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G14980.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G21060 gene 10.25 5:07148978 Glyceraldehyde-3-phosphate dehydrogenase-like family protein%3B FUNCTIONS IN: homoserine dehydrogenase activity%3B INVOLVED IN: cellular amino acid biosynthetic process%2C aspartate family amino acid biosynthetic process%2C cellular amino acid metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Homoserine dehydrogenase%2C short (InterPro:IPR022697)%2C Homoserine dehydrogenase%2C catalytic (InterPro:IPR001342)%2C Homoserine dehydrogenase%2C conserved site (InterPro:IPR019811)%3B BEST Arabidopsis thaliana protein match is: aspartate kinase-homoserine dehydrogenase i (TAIR:AT1G31230.1)%3B Has 7499 Blast hits to 7499 proteins in 2310 species: Archae - 181%3B Bacteria - 5347%3B Metazoa - 3%3B Fungi - 160%3B Plants - 133%3B Viruses - 0%3B Other Eukaryotes - 1675 (source: NCBI BLink).
AT5G19170 gene 9.41 5:06445245 Protein of Unknown Function (DUF239)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239%2C plant (InterPro:IPR004314)%3B BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT5G18460.1)%3B Has 730 Blast hits to 692 proteins in 28 species: Archae - 0%3B Bacteria - 15%3B Metazoa - 0%3B Fungi - 10%3B Plants - 705%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT5G21020 gene 9.15 5:07138762 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).
AT5G18250 gene 6.95 5:06033484 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04040.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G18920 gene 6.47 5:06310058 Cox19-like CHCH family protein%3B CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G18300 gene NAC088 5.77 5:06057773 NAC domain containing protein 88 (NAC088)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: multicellular organismal development%2C regulation of transcription%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441)%3B BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT5G18037.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G24840 gene 5.62 5:08533787 tRNA (guanine-N-7) methyltransferase%3B FUNCTIONS IN: tRNA (guanine-N7-)-methyltransferase activity%3B INVOLVED IN: acetate biosynthetic process from carbon monoxide%2C methanol oxidation%2C tRNA modification%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: tRNA (guanine-N-7) methyltransferase (InterPro:IPR003358)%3B BEST Arabidopsis thaliana protein match is: tRNA (guanine-N-7) methyltransferase (TAIR:AT5G17660.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G65080 gene MAF5 5.30 5:25997504 Is upregulated during vernalization and regulates flowering time. Encodes MADS-domain protein. Two variants encoding proteins of 198 and 184 amino acids have been reported.
AT5G14880 gene 5.15 5:04813931 Potassium transporter family protein%3B FUNCTIONS IN: potassium ion transmembrane transporter activity%3B INVOLVED IN: potassium ion transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Potassium uptake protein%2C kup (InterPro:IPR018519)%2C K+ potassium transporter (InterPro:IPR003855)%3B BEST Arabidopsis thaliana protein match is: K+ uptake permease 6 (TAIR:AT1G70300.1)%3B Has 3431 Blast hits to 3392 proteins in 1031 species: Archae - 13%3B Bacteria - 2398%3B Metazoa - 1%3B Fungi - 104%3B Plants - 790%3B Viruses - 4%3B Other Eukaryotes - 121 (source: NCBI BLink).
AT5G22690 gene 4.35 5:07541072 Disease resistance protein (TIR-NBS-LRR class) family%3B FUNCTIONS IN: transmembrane receptor activity%2C ATP binding%3B INVOLVED IN: signal transduction%2C defense response%2C apoptosis%2C innate immune response%3B LOCATED IN: intrinsic to membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Toll-Interleukin receptor (InterPro:IPR000157)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46470.1)%3B Has 15956 Blast hits to 11549 proteins in 387 species: Archae - 12%3B Bacteria - 480%3B Metazoa - 758%3B Fungi - 10%3B Plants - 14383%3B Viruses - 0%3B Other Eukaryotes - 313 (source: NCBI BLink).
AT5G23510 gene 4.10 5:07926945 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).
AT5G19280 gene KAPP 3.91 5:06488309 kinase associated protein phosphatase composed of three domains: an amino-terminal signal anchor%2C a kinase interaction (KI) domain%2C and a type 2C protein phosphatase catalytic region
AT5G19860 gene 3.86 5:06713953 Protein of unknown function%2C DUF538%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF538 (TAIR:AT1G55265.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G20360 gene Phox3 3.51 5:06881332 Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010%2C Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.
AT5G19110 gene 3.44 5:06411443 Eukaryotic aspartyl protease family protein%3B FUNCTIONS IN: aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%2C N-terminal protein myristoylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: shoot apex%2C leaf apex%2C hypocotyl%2C root%2C leaf%3B CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109)%2C Peptidase aspartic%2C catalytic (InterPro:IPR009007)%2C Peptidase A1 (InterPro:IPR001461)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G03220.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G07580 gene 3.38 5:02399726 encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1%2C ATERF-2%2C AND ATERF-5.
AT5G24830 gene 3.34 5:08530915 Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G63080.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G18140 gene 3.28 5:05998127 Chaperone DnaJ-domain superfamily protein%3B FUNCTIONS IN: unfolded protein binding%2C heat shock protein binding%3B INVOLVED IN: protein folding%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%2C Heat shock protein DnaJ%2C N-terminal (InterPro:IPR001623)%2C Heat shock protein DnaJ (InterPro:IPR003095)%2C Heat shock protein DnaJ%2C conserved site (InterPro:IPR018253)%3B BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT2G22360.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G20240 gene PI 3.21 5:06828904 Floral homeotic gene encoding a MADS domain transcription factor. Required for the specification of petal and stamen identities.
AT3G25760 gene AOC1 3.17 3:09403779 encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme%2C which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence%2C a process that involves jasmonic acid signalling pathway.
AT2G38940 gene PHT1%3B4 3.13 2:16257157 Encodes Pht1%3B4%2C a member of the Pht1 family of phosphate transporters which include: Pht1%3B1/At5g43350%2C Pht1%3B2/At5g43370%2C Pht1%3B3/At5g43360%2C Pht1%3B4/At2g38940%2C Pht1%3B5/At2g32830%2C Pht1%3B6/At5g43340%2C Pht1%3B7/At3g54700%2C Pht1%3B8/At1g20860%2C Pht1%3B9/At1g76430 (Plant Journal 2002%2C 31:341). Expression is upregulated in the shoot of cax1/cax3 mutant and is responsive to phosphate (Pi) and not phosphite (Phi) in roots and shoots.
AT5G44620 gene CYP706A3 3.10 5:17997597 member of CYP706A
AT5G22290 gene NAC089 3.05 5:07375839 Encodes ANAC089%2C a membrane-tethered transcription factor that negatively regulates floral initiation. Also controls ER-stress-induced programmed cell death.