Interaction network for c1_04176
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Show the eQTL profiles of traits with a LOD score above the threshold at the selected locus.
Trait (count=48) Type Name LOD score Position Description
AT3G57110 gene 27.99 3:21134776 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G60370.1)%3B Has 16 Blast hits to 16 proteins in 5 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 16%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G12530 gene 21.14 1:04268986 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56420.1)%3B Has 54 Blast hits to 53 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 54%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G12250 gene 14.77 1:04159227 Pentapeptide repeat-containing protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: thylakoid%2C chloroplast thylakoid membrane%2C chloroplast thylakoid lumen%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2)%3B Has 7687 Blast hits to 4280 proteins in 513 species: Archae - 134%3B Bacteria - 5724%3B Metazoa - 1%3B Fungi - 0%3B Plants - 235%3B Viruses - 4%3B Other Eukaryotes - 1589 (source: NCBI BLink).
AT1G13950 gene ELF5A-1 13.33 1:04773434 Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines%2C xylem formation is reduced.
AT1G12800 gene 12.75 1:04361551 Nucleic acid-binding%2C OB-fold-like protein%3B FUNCTIONS IN: RNA binding%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Ribosomal protein S1%2C RNA-binding domain (InterPro:IPR003029)%3B BEST Arabidopsis thaliana protein match is: Nucleic acid-binding proteins superfamily (TAIR:AT3G23700.1)%3B Has 17110 Blast hits to 8844 proteins in 2496 species: Archae - 8%3B Bacteria - 12066%3B Metazoa - 261%3B Fungi - 174%3B Plants - 188%3B Viruses - 3%3B Other Eukaryotes - 4410 (source: NCBI BLink).
AT1G12750 gene RBL6 9.02 1:04344943 RHOMBOID-like protein 6 (RBL6)%3B FUNCTIONS IN: serine-type endopeptidase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: integral to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S54%2C rhomboid (InterPro:IPR002610)%3B BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1)%3B Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138%3B Bacteria - 3818%3B Metazoa - 537%3B Fungi - 159%3B Plants - 344%3B Viruses - 0%3B Other Eukaryotes - 1276 (source: NCBI BLink).
AT1G10865 gene 8.35 1:03614513 FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191%2C N-terminal (InterPro:IPR018793)%3B Has 241 Blast hits to 241 proteins in 124 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 100%3B Fungi - 94%3B Plants - 38%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).
AT1G12730 gene 8.34 1:04334499 GPI transamidase subunit PIG-U%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: GPI anchor biosynthetic process%3B LOCATED IN: integral to membrane%2C endoplasmic reticulum membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600)%3B BEST Arabidopsis thaliana protein match is: GPI transamidase subunit PIG-U (TAIR:AT1G63110.1)%3B Has 339 Blast hits to 333 proteins in 155 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 135%3B Fungi - 121%3B Plants - 55%3B Viruses - 0%3B Other Eukaryotes - 28 (source: NCBI BLink).
AT1G09500 gene 8.09 1:03066674 similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445)%2C Vigna unguiculata (gi:1854445)%2C NOT a cinnamyl-alcohol dehydrogenase
AT1G08230 gene 7.62 1:02583594 Codes for a H+-driven%2C high affinity gamma-aminobutyric acid (GABA) transporter. Localized at the plasma membrane. In planta%2C AtGAT1 expression was highest in flowers and under conditions of elevated GABA concentrations such as wounding or senescence.
AT1G12640 gene LPLAT1 7.42 1:04303280 Encodes a lysophosphatidylcholine acyltransferase (LPCAT). Participates in the Lands cycle in developing seeds.
AT1G11530 gene CXXS1 7.25 1:03874396 Encodes a monocysteinic thioredoxin%2C thioredoxin in which the second cysteine of the redox site is replaced by a serine%2C with low disulfide reductase but efficient disulfide isomerase activity.
AT1G02305 gene 7.02 1:00455688 Cysteine proteinases superfamily protein%3B FUNCTIONS IN: cysteine-type endopeptidase activity%2C cysteine-type peptidase activity%3B INVOLVED IN: proteolysis%2C regulation of catalytic activity%3B LOCATED IN: vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase C1A%2C papain (InterPro:IPR013128)%2C Peptidase C1A%2C cathepsin B (InterPro:IPR015643)%2C Peptidase C1A%2C papain C-terminal (InterPro:IPR000668)%2C Peptidase%2C cysteine peptidase active site (InterPro:IPR000169)%2C Peptidase C1A%2C propeptide (InterPro:IPR012599)%3B BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02300.1)%3B Has 7484 Blast hits to 7435 proteins in 695 species: Archae - 51%3B Bacteria - 161%3B Metazoa - 3268%3B Fungi - 4%3B Plants - 1732%3B Viruses - 146%3B Other Eukaryotes - 2122 (source: NCBI BLink).
AT1G13380 gene 6.55 1:04588994 Protein of unknown function (DUF1218)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT4G27435.1)%3B Has 523 Blast hits to 523 proteins in 97 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 523%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G28220 gene 5.91 3:10524181 TRAF-like family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to salt stress%3B LOCATED IN: vacuole%2C chloroplast envelope%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974)%2C MATH (InterPro:IPR002083)%3B BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT1G58270.1)%3B Has 1242 Blast hits to 999 proteins in 83 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 320%3B Fungi - 0%3B Plants - 865%3B Viruses - 0%3B Other Eukaryotes - 57 (source: NCBI BLink).
AT1G31720 gene 5.87 1:11356076 Protein of unknown function (DUF1218)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT4G19370.1)%3B Has 139 Blast hits to 139 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 139%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G13360 gene 5.80 1:04576873 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1)%3B Has 69 Blast hits to 69 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6%3B Fungi - 0%3B Plants - 63%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G07140 gene SIRANBP 5.34 1:02191679 Encodes a putative Ran-binding protein (siRanBP).
AT1G12650 gene 5.31 1:04305791 unknown protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292)%3B Has 700 Blast hits to 631 proteins in 192 species: Archae - 0%3B Bacteria - 32%3B Metazoa - 138%3B Fungi - 168%3B Plants - 60%3B Viruses - 0%3B Other Eukaryotes - 302 (source: NCBI BLink).
AT1G14210 gene 4.81 1:04856778 Ribonuclease T2 family protein%3B FUNCTIONS IN: ribonuclease T2 activity%2C endoribonuclease activity%2C RNA binding%3B INVOLVED IN: response to salt stress%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568)%2C Ribonuclease T2%2C active site (InterPro:IPR018188)%3B BEST Arabidopsis thaliana protein match is: Ribonuclease T2 family protein (TAIR:AT1G14220.1)%3B Has 2321 Blast hits to 2320 proteins in 411 species: Archae - 0%3B Bacteria - 245%3B Metazoa - 291%3B Fungi - 229%3B Plants - 1455%3B Viruses - 6%3B Other Eukaryotes - 95 (source: NCBI BLink).
AT1G07530 gene SCL14 4.55 1:02313581 Encodes a member of the GRAS family of transcription factors. The protein interacts with the TGA2 transcription factor and affects the transcription of stress-responsive genes. The protein is found in the nucleus and is also exported to the cytoplasm.
AT1G04590 gene 4.36 1:01258556 BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1)%3B Has 111 Blast hits to 111 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 109%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).
AT1G76090 gene SMT3 4.30 1:28550202 Encodes S-adenosyl-methionine-sterol-C-methyltransferase%2C an enzyme in the sterol biosynthetic pathway.
AT1G31730 gene 4.09 1:11359512 Adaptin family protein%3B FUNCTIONS IN: clathrin binding%2C binding%3B INVOLVED IN: intracellular protein transport%2C vesicle-mediated transport%3B LOCATED IN: membrane coat%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989)%2C Adaptor protein complex AP-4%2C epsilon subunit (InterPro:IPR017109)%2C Armadillo-type fold (InterPro:IPR016024)%2C Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (InterPro:IPR002553)%3B BEST Arabidopsis thaliana protein match is: Adaptor protein complex AP-1%2C gamma subunit (TAIR:AT1G60070.1)%3B Has 4728 Blast hits to 3440 proteins in 365 species: Archae - 0%3B Bacteria - 98%3B Metazoa - 1563%3B Fungi - 860%3B Plants - 412%3B Viruses - 3%3B Other Eukaryotes - 1792 (source: NCBI BLink).
AT1G64850 gene 4.08 1:24096290 Calcium-binding EF hand family protein%3B CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37445.1)%3B Has 71 Blast hits to 71 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 71%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G12080 gene 3.91 1:04084162 Vacuolar calcium-binding protein-related%3B Has 7161 Blast hits to 3135 proteins in 433 species: Archae - 55%3B Bacteria - 867%3B Metazoa - 2008%3B Fungi - 476%3B Plants - 327%3B Viruses - 233%3B Other Eukaryotes - 3195 (source: NCBI BLink).
AT1G52380 gene 3.88 1:19508938 NUP50 (Nucleoporin 50 kDa) protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: intracellular transport%3B LOCATED IN: cytosol%2C nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156)%2C Pleckstrin homology-type (InterPro:IPR011993)%2C Nuclear pore complex%2C NUP2/50/61 (InterPro:IPR015007)%3B BEST Arabidopsis thaliana protein match is: NUP50 (Nucleoporin 50 kDa) protein (TAIR:AT3G15970.1)%3B Has 1614 Blast hits to 1303 proteins in 238 species: Archae - 0%3B Bacteria - 48%3B Metazoa - 835%3B Fungi - 410%3B Plants - 179%3B Viruses - 3%3B Other Eukaryotes - 139 (source: NCBI BLink).
AT1G03410 gene 2A6 3.87 1:00844436 2A6%3B FUNCTIONS IN: oxidoreductase activity%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G03400.1)%3B Has 8330 Blast hits to 8293 proteins in 997 species: Archae - 0%3B Bacteria - 1128%3B Metazoa - 114%3B Fungi - 883%3B Plants - 4883%3B Viruses - 0%3B Other Eukaryotes - 1322 (source: NCBI BLink).
AT1G16300 gene GAPCP-2 3.82 1:05574257 Encodes one of the chloroplast/plastid localized GAPDH isoforms (GAPCp1/At1g79530 and GAPCp2/At1g16300). gapcp double mutants display a drastic phenotype of arrested root development%2C dwarfism and sterility. GAPCps are important for the synthesis of serine in roots.
AT1G07030 gene 3.80 1:02158413 Mitochondrial substrate carrier family protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: transport%2C mitochondrial transport%2C transmembrane transport%3B LOCATED IN: mitochondrial inner membrane%2C membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067)%2C Mitochondrial substrate carrier (InterPro:IPR001993)%2C Mitochondrial substrate/solute carrier (InterPro:IPR018108)%3B BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G30160.1)%3B Has 27351 Blast hits to 14015 proteins in 457 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 11451%3B Fungi - 7735%3B Plants - 5292%3B Viruses - 0%3B Other Eukaryotes - 2867 (source: NCBI BLink).
AT1G08530 gene 3.59 1:02700981 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09995.2)%3B Has 140 Blast hits to 140 proteins in 53 species: Archae - 0%3B Bacteria - 63%3B Metazoa - 0%3B Fungi - 0%3B Plants - 76%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
AT2G39400 gene 3.52 2:16452612 alpha/beta-Hydrolases superfamily protein%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G55180.1)%3B Has 4815 Blast hits to 4811 proteins in 1490 species: Archae - 34%3B Bacteria - 3394%3B Metazoa - 137%3B Fungi - 136%3B Plants - 554%3B Viruses - 35%3B Other Eukaryotes - 525 (source: NCBI BLink).
AT1G12520 gene CCS 3.46 1:04267074 Copper-zinc superoxide dismutase copper chaperone (delivers copper to the Cu-Zn superoxide dismutase). Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains%2C central%2C ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.
AT1G12060 gene BAG5 3.42 1:04076226 A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins%2C plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts%2C as they regulate apoptotic-like processes ranging from pathogen attack%2C to abiotic stress%2C to plant development.
AT1G07950 gene MED22B 3.38 1:02465729 MED22B%3B FUNCTIONS IN: RNA polymerase II transcription mediator activity%3B INVOLVED IN: regulation of transcription from RNA polymerase II promoter%3B LOCATED IN: mediator complex%3B CONTAINS InterPro DOMAIN/s: Mediator complex%2C subunit Med22 (InterPro:IPR009332)%3B BEST Arabidopsis thaliana protein match is: Surfeit locus protein 5 subunit 22 of Mediator complex (TAIR:AT1G16430.1)%3B Has 245 Blast hits to 245 proteins in 83 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 164%3B Fungi - 15%3B Plants - 53%3B Viruses - 0%3B Other Eukaryotes - 13 (source: NCBI BLink).
AT1G12220 gene RPS5 3.36 1:04144257 Resistance gene%2C mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop)%2C kinase-2a%2C and putative kinase-3a domains%2C 13 imperfect leucine-rich repeats%2C a potential leucine zipper%2C and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.
AT1G11240 gene 3.33 1:03766754 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186)%3B Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0%3B Bacteria - 90%3B Metazoa - 921%3B Fungi - 378%3B Plants - 144%3B Viruses - 18%3B Other Eukaryotes - 933 (source: NCBI BLink).
AT3G50430 gene 3.28 3:18713676 unknown protein%3B Has 54 Blast hits to 54 proteins in 22 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 29%3B Fungi - 0%3B Plants - 24%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
AT3G48280 gene CYP71A25 3.24 3:17879542 putative cytochrome P450
AT1G67210 gene 3.22 1:25140815 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: sperm cell%3B CONTAINS InterPro DOMAIN/s: PSP%2C proline-rich (InterPro:IPR006568)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%3B BEST Arabidopsis thaliana protein match is: Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (TAIR:AT5G38600.1)%3B Has 197 Blast hits to 197 proteins in 73 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 104%3B Fungi - 6%3B Plants - 67%3B Viruses - 4%3B Other Eukaryotes - 16 (source: NCBI BLink).
AT3G10720 gene 3.19 3:03354406 Plant invertase/pectin methylesterase inhibitor superfamily%3B FUNCTIONS IN: pectinesterase activity%3B INVOLVED IN: cell wall modification%3B LOCATED IN: cell wall%2C plant-type cell wall%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectinesterase%2C active site (InterPro:IPR018040)%2C Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Pectinesterase%2C catalytic (InterPro:IPR000070)%2C Pectin lyase fold (InterPro:IPR012334)%3B BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G04970.1)%3B Has 2403 Blast hits to 2363 proteins in 309 species: Archae - 6%3B Bacteria - 557%3B Metazoa - 1%3B Fungi - 195%3B Plants - 1619%3B Viruses - 0%3B Other Eukaryotes - 25 (source: NCBI BLink).
AT1G69830 gene AMY3 3.19 1:26288228 Encodes a plastid-localized %26#945%3B-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms.
AT1G14770 gene 3.18 1:05086595 RING/FYVE/PHD zinc finger superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%3B BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G68030.1)%3B Has 95 Blast hits to 84 proteins in 31 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 18%3B Fungi - 12%3B Plants - 59%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).
AT1G12410 gene CLP2 3.18 1:04223030 Encodes a ClpP-related sequence. Though similar to ClpP proteins%2C this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
AT1G64690 gene BLT 3.08 1:24037475 Encodes BRANCHLESS TRICHOME (BLT) involved in trichome development. A large portion of the internal amino acid sequence of BLT is predicted to form a coiled-coil domain. BLT mutants form branchless trichomes with blunt tips.
AT3G15270 gene SPL5 3.05 3:05140365 Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family%2C a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box%2C which encodes the SBP-domain%2C required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.
AT5G63070 gene 3.02 5:25299178 Ribosomal protein S19 family protein%3B FUNCTIONS IN: structural constituent of ribosome%2C RNA binding%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C ribosome%3B EXPRESSED IN: leaf whorl%2C flower%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S15%2C eukaryotic/archaeal (InterPro:IPR005713)%2C Ribosomal protein S19/S15 (InterPro:IPR002222)%2C Ribosomal protein S19 conserved site (InterPro:IPR020934)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein S19 family protein (TAIR:AT5G09500.1)%3B Has 9984 Blast hits to 9984 proteins in 3781 species: Archae - 256%3B Bacteria - 5293%3B Metazoa - 278%3B Fungi - 251%3B Plants - 1765%3B Viruses - 0%3B Other Eukaryotes - 2141 (source: NCBI BLink).
AT1G21670 gene 3.02 1:07610241 LOCATED IN: cell wall%2C plant-type cell wall%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659)%2C Six-bladed beta-propeller%2C TolB-like (InterPro:IPR011042)%3B BEST Arabidopsis thaliana protein match is: DPP6 N-terminal domain-like protein (TAIR:AT1G21680.1)%3B Has 8461 Blast hits to 5060 proteins in 1257 species: Archae - 79%3B Bacteria - 5567%3B Metazoa - 37%3B Fungi - 70%3B Plants - 117%3B Viruses - 0%3B Other Eukaryotes - 2591 (source: NCBI BLink).