Interaction network for c4_11878
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Show the eQTL profiles of traits with a LOD score above the threshold at the selected locus.
Trait (count=71) Type Name LOD score Position Description
AT4G19500 gene 19.57 4:10625562 nucleoside-triphosphatases%3Btransmembrane receptors%3Bnucleotide binding%3BATP binding%3B FUNCTIONS IN: transmembrane receptor activity%2C nucleoside-triphosphatase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: signal transduction%2C defense response%2C apoptosis%2C innate immune response%3B LOCATED IN: intrinsic to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%2C Toll-Interleukin receptor (InterPro:IPR000157)%2C Protein of unknown function DUF640 (InterPro:IPR006936)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16950.2)%3B Has 20045 Blast hits to 11477 proteins in 434 species: Archae - 7%3B Bacteria - 464%3B Metazoa - 257%3B Fungi - 40%3B Plants - 18821%3B Viruses - 4%3B Other Eukaryotes - 452 (source: NCBI BLink).
AT4G20170 gene GALS3 13.41 4:10896579 Domain of unknown function (DUF23)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166)%3B BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G44670.1)%3B Has 199 Blast hits to 199 proteins in 36 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 44%3B Fungi - 2%3B Plants - 116%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).
AT4G23290 gene CRK21 12.60 4:12177734 Encodes a cysteine-rich receptor-like protein kinase.
AT4G21900 gene PRORP3 12.27 4:11616338 Encodes a proteinaceous RNase P that supports RNase P activity in vivo in both organelles and the nucleus. It is also involved in the maturation of small nucleolar RNA (snoRNA) and mRNA.
AT4G19100 gene PAM68 11.77 4:10453415 Protein of unknown function (DUF3464)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3464 (InterPro:IPR021855)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3464) (TAIR:AT5G52780.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).
AT4G19515 gene None 10.35 None: None
AT4G24120 gene YSL1 9.02 4:12524186 Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1).
AT4G19950 gene 8.62 4:10809843 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44860.1)%3B Has 338 Blast hits to 330 proteins in 72 species: Archae - 2%3B Bacteria - 94%3B Metazoa - 7%3B Fungi - 0%3B Plants - 232%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).
AT4G23215 gene 7.47 4:12152900 pseudogene of cysteine-rich receptor-like protein kinase family protein [Source:TAIR;Acc:AT4G23215]
AT4G28160 gene 7.39 4:13980316 hydroxyproline-rich glycoprotein family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to gibberellin stimulus%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C petal differentiation and expansion stage%2C D bilateral stage%3B BEST Arabidopsis thaliana protein match is: cell wall protein precursor%2C putative (TAIR:AT2G20870.1)%3B Has 15 Blast hits to 15 proteins in 4 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 15%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G28100 gene 6.28 4:13965099 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: anchored to plasma membrane%2C anchored to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18050.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G22390 gene 6.11 4:11813313 F-box associated ubiquitination effector family protein%3B CONTAINS InterPro DOMAIN/s: F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT4G12560.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G22270 gene MRB1 5.91 4:11773221 Encodes a plasma membrane protein involved in the positive regulation of organ size development. Overexpression results in organ size enlargement.
AT4G20830 gene 5.82 4:11155453 FAD-binding Berberine family protein%3B FUNCTIONS IN: electron carrier activity%2C oxidoreductase activity%2C FAD binding%2C catalytic activity%3B INVOLVED IN: response to oxidative stress%3B LOCATED IN: mitochondrion%2C apoplast%2C plasma membrane%2C vacuole%2C plant-type cell wall%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: FAD-binding%2C type 2 (InterPro:IPR016166)%2C Berberine/berberine-like (InterPro:IPR012951)%2C FAD linked oxidase%2C N-terminal (InterPro:IPR006094)%3B BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT4G20840.1)%3B Has 4327 Blast hits to 4201 proteins in 643 species: Archae - 38%3B Bacteria - 1800%3B Metazoa - 2%3B Fungi - 1615%3B Plants - 732%3B Viruses - 0%3B Other Eukaryotes - 140 (source: NCBI BLink).
AT4G29030 gene 5.44 4:14307195 Putative membrane lipoprotein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 7 growth stages%3B Has 83209 Blast hits to 19401 proteins in 1362 species: Archae - 122%3B Bacteria - 36227%3B Metazoa - 23555%3B Fungi - 3961%3B Plants - 7492%3B Viruses - 888%3B Other Eukaryotes - 10964 (source: NCBI BLink).
AT4G28350 gene 5.39 4:14026577 Concanavalin A-like lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: stem%2C cotyledon%2C leaf%2C stamen%3B EXPRESSED DURING: LP.04 four leaves visible%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Legume lectin%2C beta chain (InterPro:IPR001220)%2C Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Concanavalin A-like lectin/glucanase%2C subgroup (InterPro:IPR013320)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%3B BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT4G04960.1)%3B Has 117572 Blast hits to 116208 proteins in 4641 species: Archae - 127%3B Bacteria - 13536%3B Metazoa - 42743%3B Fungi - 9918%3B Plants - 33874%3B Viruses - 420%3B Other Eukaryotes - 16954 (source: NCBI BLink).
AT4G19410 gene 5.19 4:10580893 Pectinacetylesterase family protein%3B FUNCTIONS IN: carboxylesterase activity%3B LOCATED IN: cell wall%2C membrane%2C plant-type cell wall%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963)%3B BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT5G45280.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G17240 gene 5.10 4:09666439 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 8 growth stages%3B Has 1142 Blast hits to 1055 proteins in 252 species: Archae - 22%3B Bacteria - 318%3B Metazoa - 248%3B Fungi - 96%3B Plants - 59%3B Viruses - 3%3B Other Eukaryotes - 396 (source: NCBI BLink).
AT4G23820 gene 5.08 4:12397038 Pectin lyase-like superfamily protein%3B FUNCTIONS IN: polygalacturonase activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Glycoside hydrolase%2C family 28 (InterPro:IPR000743)%2C Pectin lyase fold (InterPro:IPR012334)%2C Parallel beta-helix repeat (InterPro:IPR006626)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G41870.1)%3B Has 4183 Blast hits to 4168 proteins in 506 species: Archae - 6%3B Bacteria - 1472%3B Metazoa - 14%3B Fungi - 1146%3B Plants - 1414%3B Viruses - 0%3B Other Eukaryotes - 131 (source: NCBI BLink).
AT4G08330 gene 5.06 4:05255120 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17705.1)%3B Has 98 Blast hits to 98 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 98%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G30450 gene 4.97 4:14886027 glycine-rich protein%3B Has 43753 Blast hits to 9269 proteins in 834 species: Archae - 55%3B Bacteria - 10441%3B Metazoa - 12146%3B Fungi - 3592%3B Plants - 5151%3B Viruses - 671%3B Other Eukaryotes - 11697 (source: NCBI BLink).
AT4G27370 gene VIIIB 4.85 4:13694689 member of Myosin-like proteins
AT3G42090 gene 4.60 3:14274222 transposable element gene [Source:TAIR;Acc:AT3G42090]
AT4G23210 gene CRK13 4.59 4:12148673 Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death%2C and induces defense against pathogens by causing increased accumulation of salicylic acid.
AT4G23730 gene 4.56 4:12362166 Galactose mutarotase-like superfamily protein%3B FUNCTIONS IN: isomerase activity%2C carbohydrate binding%2C aldose 1-epimerase activity%2C catalytic activity%3B INVOLVED IN: galactose metabolic process%2C carbohydrate metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013)%2C Aldose 1-epimerase (InterPro:IPR008183)%2C Glycoside hydrolase-type carbohydrate-binding%2C subgroup (InterPro:IPR014718)%3B BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT3G61610.1)%3B Has 2244 Blast hits to 2241 proteins in 942 species: Archae - 0%3B Bacteria - 1605%3B Metazoa - 39%3B Fungi - 135%3B Plants - 255%3B Viruses - 0%3B Other Eukaryotes - 210 (source: NCBI BLink).
AT4G25780 gene 4.51 4:13120824 CAP (Cysteine-rich secretory proteins%2C Antigen 5%2C and Pathogenesis-related 1 protein) superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%2C extracellular region%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related%2C conserved site (InterPro:IPR018244)%2C Allergen V5/Tpx-1 related (InterPro:IPR001283)%2C Ves allergen (InterPro:IPR002413)%2C SCP-like extracellular (InterPro:IPR014044)%3B BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins%2C Antigen 5%2C and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT5G57625.1)%3B Has 3029 Blast hits to 2936 proteins in 376 species: Archae - 0%3B Bacteria - 66%3B Metazoa - 1646%3B Fungi - 332%3B Plants - 881%3B Viruses - 0%3B Other Eukaryotes - 104 (source: NCBI BLink).
AT4G27350 gene 4.45 4:13690645 Protein of unknown function (DUF1223)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1223 (InterPro:IPR010634)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1223) (TAIR:AT5G54240.1)%3B Has 527 Blast hits to 527 proteins in 230 species: Archae - 0%3B Bacteria - 439%3B Metazoa - 0%3B Fungi - 4%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 38 (source: NCBI BLink).
AT4G23230 gene CRK15 4.44 4:12157827 Encodes a cysteine-rich receptor-like protein kinase.
AT4G23610 gene 4.36 4:12314025 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family%3B CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein%2C group 2 (InterPro:IPR004864)%3B BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT2G46150.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G26555 gene 4.22 4:13404430 FKBP-like peptidyl-prolyl cis-trans isomerase family protein%3B FUNCTIONS IN: FK506 binding%2C peptidyl-prolyl cis-trans isomerase activity%3B INVOLVED IN: protein folding%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (InterPro:IPR001179)%3B BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT4G19830.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G26790 gene 4.16 4:13487457 GDSL-like Lipase/Acylhydrolase superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C acting on ester bonds%2C carboxylesterase activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Lipase%2C GDSL (InterPro:IPR001087)%3B BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G42990.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G27300 gene 4.14 4:13668676 S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C PAN-2 domain (InterPro:IPR013227)%2C Apple-like (InterPro:IPR003609)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT4G27290.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT4G17250 gene 4.05 4:09670763 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47580.1)%3B Has 31 Blast hits to 31 proteins in 6 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 31%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G21215 gene 4.03 4:11310348 unknown protein%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).
AT4G16850 gene 3.99 4:09480046 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31130.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G62210 gene 3.97 5:24986294 Embryo-specific protein 3%2C (ATS3)%3B CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase%2C PLAT/LH2 (InterPro:IPR008976)%2C Embryo-specific 3 (InterPro:IPR010417)%3B BEST Arabidopsis thaliana protein match is: seed gene 3 (TAIR:AT5G07190.1)%3B Has 13635 Blast hits to 5538 proteins in 466 species: Archae - 12%3B Bacteria - 1109%3B Metazoa - 3835%3B Fungi - 1100%3B Plants - 4139%3B Viruses - 1069%3B Other Eukaryotes - 2371 (source: NCBI BLink).
AT4G12480 gene EARLI1 3.97 4:07406065 a putative lipid transfer protein%2C vernalization-responsive and cold-induced
AT4G36400 gene D2HGDH 3.96 4:17197188 Encodes a (D)-2-hydroxyglutarate dehydrogenase.
AT5G03380 gene 3.94 5:00832035 Heavy metal transport/detoxification superfamily protein %3B FUNCTIONS IN: metal ion binding%3B INVOLVED IN: metal ion transport%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121)%3B BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT2G36950.1)%3B Has 4632 Blast hits to 3385 proteins in 434 species: Archae - 9%3B Bacteria - 451%3B Metazoa - 988%3B Fungi - 256%3B Plants - 2406%3B Viruses - 0%3B Other Eukaryotes - 522 (source: NCBI BLink).
AT4G16790 gene 3.92 4:09451476 hydroxyproline-rich glycoprotein family protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60380.1)%3B Has 8255 Blast hits to 6141 proteins in 463 species: Archae - 4%3B Bacteria - 400%3B Metazoa - 3327%3B Fungi - 1159%3B Plants - 2082%3B Viruses - 247%3B Other Eukaryotes - 1036 (source: NCBI BLink).
AT4G25760 gene GDU2 3.88 4:13116028 Encodes a member of the GDU (glutamine dumper) family proteins involved in amino acid export: At4g31730 (GDU1)%2C At4g25760 (GDU2)%2C At5g57685 (GDU3)%2C At2g24762 (GDU4)%2C At5g24920 (GDU5)%2C At3g30725 (GDU6) and At5g38770 (GDU7).
AT1G07450 gene 3.83 1:02287926 NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C binding%2C catalytic activity%3B INVOLVED IN: oxidation reduction%2C metabolic process%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase%2C conserved site (InterPro:IPR020904)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C Glucose/ribitol dehydrogenase (InterPro:IPR002347)%2C Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198)%3B BEST Arabidopsis thaliana protein match is: tropinone reductase (TAIR:AT2G29330.1)%3B Has 110061 Blast hits to 109928 proteins in 3503 species: Archae - 928%3B Bacteria - 73032%3B Metazoa - 4466%3B Fungi - 5399%3B Plants - 2523%3B Viruses - 2%3B Other Eukaryotes - 23711 (source: NCBI BLink).
AT4G23600 gene CORI3 3.77 4:12310379 Encodes cystine lyase which is expected to be involved in amino acid metabolism%2C providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.
AT4G21870 gene 3.74 4:11603481 HSP20-like chaperones superfamily protein%3B CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068)%2C HSP20-like chaperone (InterPro:IPR008978)%3B BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G53540.1)%3B Has 2331 Blast hits to 2331 proteins in 523 species: Archae - 47%3B Bacteria - 802%3B Metazoa - 2%3B Fungi - 44%3B Plants - 1239%3B Viruses - 0%3B Other Eukaryotes - 197 (source: NCBI BLink).
AT3G61280 gene 3.65 3:22680960 CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598)%2C Protein of unknown function DUF821%2C CAP10-like (InterPro:IPR008539)%3B BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT3G61290.1)%3B Has 683 Blast hits to 672 proteins in 134 species: Archae - 0%3B Bacteria - 47%3B Metazoa - 230%3B Fungi - 121%3B Plants - 246%3B Viruses - 5%3B Other Eukaryotes - 34 (source: NCBI BLink).
AT4G15765 gene 3.62 4:08975280 FAD/NAD(P)-binding oxidoreductase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C monooxygenase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076)%3B BEST Arabidopsis thaliana protein match is: monooxygenase 1 (TAIR:AT4G15760.1)%3B Has 427 Blast hits to 427 proteins in 107 species: Archae - 16%3B Bacteria - 142%3B Metazoa - 0%3B Fungi - 27%3B Plants - 219%3B Viruses - 0%3B Other Eukaryotes - 23 (source: NCBI BLink).
AT4G39770 gene TPPH 3.60 4:18448865 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein%3B FUNCTIONS IN: catalytic activity%2C trehalose-phosphatase activity%3B INVOLVED IN: trehalose biosynthetic process%2C metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase%2C subfamily IIB (InterPro:IPR006379)%2C Trehalose-phosphatase (InterPro:IPR003337)%3B BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT2G22190.1)%3B Has 2411 Blast hits to 2406 proteins in 857 species: Archae - 41%3B Bacteria - 1356%3B Metazoa - 219%3B Fungi - 156%3B Plants - 489%3B Viruses - 0%3B Other Eukaryotes - 150 (source: NCBI BLink).
AT3G15510 gene NAC2 3.57 3:05243432 Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2.
AT4G27450 gene 3.55 4:13727370 Aluminium induced protein with YGL and LRDR motifs%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cytosol%2C nucleus%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B BEST Arabidopsis thaliana protein match is: Aluminium induced protein with YGL and LRDR motifs (TAIR:AT3G15450.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G33920 gene 3.50 4:16260481 Protein phosphatase 2C family protein%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C catalytic activity%3B INVOLVED IN: protein amino acid dephosphorylation%3B LOCATED IN: mitochondrion%2C protein serine/threonine phosphatase complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (InterPro:IPR000222)%2C Protein phosphatase 2C-related (InterPro:IPR001932)%2C Protein phosphatase 2C (InterPro:IPR015655)%2C Protein phosphatase 2C%2C N-terminal (InterPro:IPR014045)%3B BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1)%3B Has 5306 Blast hits to 5302 proteins in 304 species: Archae - 0%3B Bacteria - 42%3B Metazoa - 1364%3B Fungi - 564%3B Plants - 2405%3B Viruses - 3%3B Other Eukaryotes - 928 (source: NCBI BLink).
AT4G27000 gene ATRBP45C 3.48 4:13554604 ATRBP45C%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G13575 gene 3.47 4:07890249 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT3G16660 gene 3.41 3:05676749 Pollen Ole e 1 allergen and extensin family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041)%3B BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT3G16670.1)%3B Has 273 Blast hits to 210 proteins in 63 species: Archae - 0%3B Bacteria - 149%3B Metazoa - 42%3B Fungi - 0%3B Plants - 77%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink).
AT4G29360 gene 3.40 4:14451351 O-Glycosyl hydrolases family 17 protein%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: anchored to plasma membrane%2C anchored to membrane%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946)%2C Glycoside hydrolase%2C family 17 (InterPro:IPR000490)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT5G56590.1)%3B Has 2836 Blast hits to 2784 proteins in 145 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 3%3B Fungi - 20%3B Plants - 2794%3B Viruses - 0%3B Other Eukaryotes - 13 (source: NCBI BLink).
AT4G27730 gene OPT6 3.30 4:13833807 oligopeptide transporter
AT4G17180 gene 3.28 4:09646466 O-Glycosyl hydrolases family 17 protein%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C family 17 (InterPro:IPR000490)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G31140.1)%3B Has 2802 Blast hits to 2733 proteins in 160 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 3%3B Fungi - 65%3B Plants - 2718%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink).
AT1G68945 gene 3.25 1:25926849 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B Has 1 Blast hits to 1 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G11050 gene FER2 3.24 3:03463477 ferritin 2 (FER2)%3B FUNCTIONS IN: oxidoreductase activity%2C ferric iron binding%2C binding%2C transition metal ion binding%3B INVOLVED IN: response to oxidative stress%2C cellular iron ion homeostasis%2C response to abscisic acid stimulus%2C iron ion transport%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Ferritin%2C N-terminal (InterPro:IPR001519)%2C Ferritin-related (InterPro:IPR012347)%2C Ferritin-like (InterPro:IPR009040)%2C Ferritin%2C conserved site (InterPro:IPR014034)%2C Ferritin/ribonucleotide reductase-like (InterPro:IPR009078)%2C Ferritin/Dps protein (InterPro:IPR008331)%3B BEST Arabidopsis thaliana protein match is: ferritin 4 (TAIR:AT2G40300.1)%3B Has 4033 Blast hits to 4031 proteins in 1061 species: Archae - 169%3B Bacteria - 1584%3B Metazoa - 1680%3B Fungi - 11%3B Plants - 350%3B Viruses - 0%3B Other Eukaryotes - 239 (source: NCBI BLink).
AT4G26150 gene CGA1 3.24 4:13253084 Encodes a member of the GATA factor family of zinc finger transcription factors. Modulate chlorophyll biosynthesis and glutamate synthase (GLU1/Fd-GOGAT) expression.
AT4G29190 gene OZF2 3.22 4:14391849 Zinc finger C-x8-C-x5-C-x3-H type family protein%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B BEST Arabidopsis thaliana protein match is: CCCH-type zinc finger family protein (TAIR:AT2G19810.1)%3B Has 726 Blast hits to 700 proteins in 125 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 157%3B Fungi - 3%3B Plants - 406%3B Viruses - 0%3B Other Eukaryotes - 160 (source: NCBI BLink).
AT5G57710 gene 3.21 5:23384255 SMAX1 (SUPPRESSOR OF MAX2 1) is a member of an eight-gene family in Arabidopsis that has weak similarity to AtHSP101%2C a ClpB chaperonin required for thermotolerance. SMAX1 is an important component of KAR/SL signaling during seed germination and seedling growth%2C but is not necessary for all MAX2-dependent responses.
AT4G21860 gene MSRB2 3.20 4:11599645 methionine sulfoxide reductase B 2 (MSRB2)%3B FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: chloroplast%2C chloroplast stroma%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579)%2C Mss4-like (InterPro:IPR011057)%3B BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase B3 (TAIR:AT4G04800.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT3G62870 gene 3.19 3:23242561 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic ribosome%2C cytosolic large ribosomal subunit%2C plasma membrane%2C membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L7A/L8 (InterPro:IPR001921)%2C Ribosomal protein L7Ae/L8/Nhp2 family (InterPro:IPR018492)%2C Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038)%2C Ribosomal protein L7Ae conserved site (InterPro:IPR004037)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT2G47610.1)%3B Has 2083 Blast hits to 2081 proteins in 414 species: Archae - 338%3B Bacteria - 1%3B Metazoa - 718%3B Fungi - 357%3B Plants - 268%3B Viruses - 0%3B Other Eukaryotes - 401 (source: NCBI BLink).
AT3G24180 gene 3.18 3:08734611 Beta-glucosidase%2C GBA2 type family protein%3B FUNCTIONS IN: glucosylceramidase activity%2C catalytic activity%3B INVOLVED IN: glucosylceramide catabolic process%2C sphingolipid metabolic process%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775)%2C Six-hairpin glycosidase-like (InterPro:IPR008928)%2C Beta-glucosidase%2C GBA2 type (InterPro:IPR014551)%3B BEST Arabidopsis thaliana protein match is: Beta-glucosidase%2C GBA2 type family protein (TAIR:AT5G49900.1)%3B Has 952 Blast hits to 742 proteins in 175 species: Archae - 79%3B Bacteria - 320%3B Metazoa - 186%3B Fungi - 2%3B Plants - 267%3B Viruses - 0%3B Other Eukaryotes - 98 (source: NCBI BLink).
AT5G48850 gene ATSDI1 3.15 5:19805437 homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations%2C indicating a role in regulation of stored sulfate pools.
AT5G42650 gene AOS 3.15 5:17097564 Encodes a member of the cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA biosynthetic pathway. It shows a dual catalytic activity%2C the major one being a 13-AOS but also expressing a 9-AOS activity.
AT3G50950 gene ZAR1 3.15 3:18935674 HOPZ-ACTIVATED RESISTANCE 1 (ZAR1)%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: defense response%2C apoptosis%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43470.2)%3B Has 15477 Blast hits to 13963 proteins in 472 species: Archae - 2%3B Bacteria - 362%3B Metazoa - 212%3B Fungi - 129%3B Plants - 14652%3B Viruses - 8%3B Other Eukaryotes - 112 (source: NCBI BLink).
AT4G27480 gene 3.10 4:13736655 Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C acetylglucosaminyltransferase activity%3B INVOLVED IN: carbohydrate biosynthetic process%2C N-terminal protein myristoylation%3B LOCATED IN: endomembrane system%2C membrane%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl transferase%2C family 14 (InterPro:IPR003406)%2C Core-2/I-Branching enzyme (InterPro:IPR021141)%3B BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1%2C6-N-acetylglucosaminyltransferase family protein (TAIR:AT3G15350.2)%3B Has 955 Blast hits to 954 proteins in 119 species: Archae - 0%3B Bacteria - 44%3B Metazoa - 555%3B Fungi - 0%3B Plants - 318%3B Viruses - 14%3B Other Eukaryotes - 24 (source: NCBI BLink).
AT5G19140 gene AILP1 3.07 5:06423153 AILP1%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to auxin stimulus%2C response to aluminum ion%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: Aluminium induced protein with YGL and LRDR motifs (TAIR:AT5G43830.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT4G24210 gene SLY1 3.06 4:12563279 F-box protein that is involved in GA signaling. Regulates seed germination. Component of E3 ubiquitin complex. Interacts with DELLA proteins.
AT3G49990 gene 3.02 3:18532301 unknown protein%3B Has 1524 Blast hits to 1298 proteins in 225 species: Archae - 9%3B Bacteria - 84%3B Metazoa - 474%3B Fungi - 184%3B Plants - 98%3B Viruses - 17%3B Other Eukaryotes - 658 (source: NCBI BLink).