Interaction network for c4_13171
Layout:
Zoom

Total candidates:
Total candidates with interaction:
legend
Please select a peak in the plot
?
Show the eQTL profiles of traits with a LOD score above the threshold at the selected locus.
Trait (count=31) Type Name LOD score Position Description
AT4G24420 gene 20.86 4:12626640 RNA-binding (RRM/RBD/RNP motifs) family protein%3B Has 63 Blast hits to 59 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 14%3B Fungi - 0%3B Plants - 47%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).
AT4G29200 gene 20.42 4:14398054 Beta-galactosidase related protein%3B FUNCTIONS IN: hydrolase activity%2C hydrolyzing O-glycosyl compounds%3B INVOLVED IN: carbohydrate metabolic process%3B EXPRESSED IN: leaf%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 35 (InterPro:IPR001944)%3B BEST Arabidopsis thaliana protein match is: Beta-galactosidase related protein (TAIR:AT5G49250.1)%3B Has 65 Blast hits to 65 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 65%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G25300 gene 12.27 4:12945120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors%2C oxidoreductase activity%3B INVOLVED IN: flavonoid biosynthetic process%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G25310.1)%3B Has 8488 Blast hits to 8445 proteins in 990 species: Archae - 0%3B Bacteria - 1083%3B Metazoa - 108%3B Fungi - 972%3B Plants - 4966%3B Viruses - 0%3B Other Eukaryotes - 1359 (source: NCBI BLink).
AT4G20350 gene 11.35 4:10988037 oxidoreductases%3B FUNCTIONS IN: oxidoreductase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B Has 320 Blast hits to 320 proteins in 141 species: Archae - 0%3B Bacteria - 19%3B Metazoa - 112%3B Fungi - 69%3B Plants - 54%3B Viruses - 3%3B Other Eukaryotes - 63 (source: NCBI BLink).
AT4G26550 gene 11.10 4:13402379 Got1/Sft2-like vescicle transport protein family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: vesicle-mediated transport%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Vesicle transport protein%2C Got1/SFT2-like (InterPro:IPR007305)%2C Vesicle transport protein%2C SFT2-like (InterPro:IPR011691)%3B BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G56020.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G19950 gene 8.92 4:10809843 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44860.1)%3B Has 338 Blast hits to 330 proteins in 72 species: Archae - 2%3B Bacteria - 94%3B Metazoa - 7%3B Fungi - 0%3B Plants - 232%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).
AT4G23215 gene 6.58 4:12152900 pseudogene of cysteine-rich receptor-like protein kinase family protein [Source:TAIR;Acc:AT4G23215]
AT4G28350 gene 5.36 4:14026577 Concanavalin A-like lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: stem%2C cotyledon%2C leaf%2C stamen%3B EXPRESSED DURING: LP.04 four leaves visible%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Legume lectin%2C beta chain (InterPro:IPR001220)%2C Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Concanavalin A-like lectin/glucanase%2C subgroup (InterPro:IPR013320)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%3B BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT4G04960.1)%3B Has 117572 Blast hits to 116208 proteins in 4641 species: Archae - 127%3B Bacteria - 13536%3B Metazoa - 42743%3B Fungi - 9918%3B Plants - 33874%3B Viruses - 420%3B Other Eukaryotes - 16954 (source: NCBI BLink).
AT4G22270 gene MRB1 5.15 4:11773221 Encodes a plasma membrane protein involved in the positive regulation of organ size development. Overexpression results in organ size enlargement.
AT4G30450 gene 4.89 4:14886027 glycine-rich protein%3B Has 43753 Blast hits to 9269 proteins in 834 species: Archae - 55%3B Bacteria - 10441%3B Metazoa - 12146%3B Fungi - 3592%3B Plants - 5151%3B Viruses - 671%3B Other Eukaryotes - 11697 (source: NCBI BLink).
AT4G27350 gene 4.37 4:13690645 Protein of unknown function (DUF1223)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1223 (InterPro:IPR010634)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1223) (TAIR:AT5G54240.1)%3B Has 527 Blast hits to 527 proteins in 230 species: Archae - 0%3B Bacteria - 439%3B Metazoa - 0%3B Fungi - 4%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 38 (source: NCBI BLink).
AT3G42090 gene 4.35 3:14274222 transposable element gene [Source:TAIR;Acc:AT3G42090]
AT4G25780 gene 4.27 4:13120824 CAP (Cysteine-rich secretory proteins%2C Antigen 5%2C and Pathogenesis-related 1 protein) superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%2C extracellular region%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related%2C conserved site (InterPro:IPR018244)%2C Allergen V5/Tpx-1 related (InterPro:IPR001283)%2C Ves allergen (InterPro:IPR002413)%2C SCP-like extracellular (InterPro:IPR014044)%3B BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins%2C Antigen 5%2C and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT5G57625.1)%3B Has 3029 Blast hits to 2936 proteins in 376 species: Archae - 0%3B Bacteria - 66%3B Metazoa - 1646%3B Fungi - 332%3B Plants - 881%3B Viruses - 0%3B Other Eukaryotes - 104 (source: NCBI BLink).
AT4G27070 gene TSB2 4.21 4:13586268 Tryptophan synthase beta. Expressed at low levels in all tissues.
AT4G27300 gene 4.02 4:13668676 S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C PAN-2 domain (InterPro:IPR013227)%2C Apple-like (InterPro:IPR003609)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT4G27290.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT4G27730 gene OPT6 4.00 4:13833807 oligopeptide transporter
AT4G21215 gene 3.92 4:11310348 unknown protein%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).
AT4G27000 gene ATRBP45C 3.82 4:13554604 ATRBP45C%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G23230 gene CRK15 3.69 4:12157827 Encodes a cysteine-rich receptor-like protein kinase.
AT4G23730 gene 3.68 4:12362166 Galactose mutarotase-like superfamily protein%3B FUNCTIONS IN: isomerase activity%2C carbohydrate binding%2C aldose 1-epimerase activity%2C catalytic activity%3B INVOLVED IN: galactose metabolic process%2C carbohydrate metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013)%2C Aldose 1-epimerase (InterPro:IPR008183)%2C Glycoside hydrolase-type carbohydrate-binding%2C subgroup (InterPro:IPR014718)%3B BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT3G61610.1)%3B Has 2244 Blast hits to 2241 proteins in 942 species: Archae - 0%3B Bacteria - 1605%3B Metazoa - 39%3B Fungi - 135%3B Plants - 255%3B Viruses - 0%3B Other Eukaryotes - 210 (source: NCBI BLink).
AT4G26555 gene 3.61 4:13404430 FKBP-like peptidyl-prolyl cis-trans isomerase family protein%3B FUNCTIONS IN: FK506 binding%2C peptidyl-prolyl cis-trans isomerase activity%3B INVOLVED IN: protein folding%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (InterPro:IPR001179)%3B BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT4G19830.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G31875 gene 3.61 4:15411701 unknown protein%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G17250 gene 3.58 4:09670763 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47580.1)%3B Has 31 Blast hits to 31 proteins in 6 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 31%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G19430 gene 3.55 4:10598371 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G26790 gene 3.52 4:13487457 GDSL-like Lipase/Acylhydrolase superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C acting on ester bonds%2C carboxylesterase activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Lipase%2C GDSL (InterPro:IPR001087)%3B BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G42990.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G26150 gene CGA1 3.44 4:13253084 Encodes a member of the GATA factor family of zinc finger transcription factors. Modulate chlorophyll biosynthesis and glutamate synthase (GLU1/Fd-GOGAT) expression.
AT4G29360 gene 3.39 4:14451351 O-Glycosyl hydrolases family 17 protein%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: anchored to plasma membrane%2C anchored to membrane%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946)%2C Glycoside hydrolase%2C family 17 (InterPro:IPR000490)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT5G56590.1)%3B Has 2836 Blast hits to 2784 proteins in 145 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 3%3B Fungi - 20%3B Plants - 2794%3B Viruses - 0%3B Other Eukaryotes - 13 (source: NCBI BLink).
AT4G28740 gene 3.31 4:14200903 FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883)%3B BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G29190 gene OZF2 3.21 4:14391849 Zinc finger C-x8-C-x5-C-x3-H type family protein%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B BEST Arabidopsis thaliana protein match is: CCCH-type zinc finger family protein (TAIR:AT2G19810.1)%3B Has 726 Blast hits to 700 proteins in 125 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 157%3B Fungi - 3%3B Plants - 406%3B Viruses - 0%3B Other Eukaryotes - 160 (source: NCBI BLink).
AT4G27450 gene 3.10 4:13727370 Aluminium induced protein with YGL and LRDR motifs%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cytosol%2C nucleus%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B BEST Arabidopsis thaliana protein match is: Aluminium induced protein with YGL and LRDR motifs (TAIR:AT3G15450.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G22930 gene PYR4 3.02 4:12018829 Encodes dihydroorotase (PYR4).