Interaction network for RSM_3_4.35
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Show the eQTL profiles of traits with a LOD score above the threshold at the selected locus.
Trait (count=122) Type Name LOD score Position Description
AT3G14600 gene 17.08 3:04910629 Ribosomal protein L18ae/LX family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: N-terminal protein myristoylation%2C translation%2C ribosome biogenesis%3B LOCATED IN: cytosolic ribosome%2C ribosome%2C cytosolic large ribosomal subunit%2C membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L18ae/LX (InterPro:IPR021138)%2C Ribosomal protein L18ae (InterPro:IPR002670)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae/LX family protein (TAIR:AT2G34480.1)%3B Has 758 Blast hits to 757 proteins in 282 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 314%3B Fungi - 159%3B Plants - 155%3B Viruses - 0%3B Other Eukaryotes - 130 (source: NCBI BLink).
AT3G17680 gene 15.78 3:06042907 Kinase interacting (KIP1-like) family protein%3B CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684)%3B BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT1G48405.1)%3B Has 122 Blast hits to 120 proteins in 22 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 6%3B Fungi - 0%3B Plants - 100%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).
AT3G14210 gene ESM1 15.09 3:04729399 A semidominant QTL which has an epistatic effect on the Epithiospecifier gene. Represses nitrile formation and favors isothiocyanate production during glucosinolate hydrolysis. The functional allele deters the insect herbivory T. ni.
AT3G13438 gene SADHU7-1 14.76 3:04377061 transposable element gene [Source:TAIR;Acc:AT3G13438]
AT3G16430 gene JAL31 14.03 3:05581568 Encodes a protein that increases the beta-glucosidase activities of three scopolin glucosidases in vitro.
AT3G16770 gene EBP 13.44 3:05705541 Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1%2C but not under EIN3.
AT3G08580 gene AAC1 13.32 3:02605435 mitochondrial ADP/ATP carrier
AT3G12965 gene 12.29 3:04136961 Unknown gene
AT3G08630 gene 11.95 3:02620713 Protein of unknown function (DUF3411)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3411) (TAIR:AT3G08640.1)%3B Has 4366 Blast hits to 2077 proteins in 248 species: Archae - 0%3B Bacteria - 513%3B Metazoa - 2417%3B Fungi - 136%3B Plants - 874%3B Viruses - 19%3B Other Eukaryotes - 407 (source: NCBI BLink).
AT3G09820 gene ADK1 10.31 3:03011780 Involved in the salvage synthesis of adenylates and methyl recycling
AT3G08610 gene 8.65 3:02615426 unknown protein%3B Has 40 Blast hits to 40 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 40%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G18535 gene 8.46 3:06375269 tubulin-tyrosine ligases%3B FUNCTIONS IN: tubulin-tyrosine ligase activity%3B INVOLVED IN: protein modification process%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Tubulin-tyrosine ligase (InterPro:IPR004344).
AT3G09260 gene PYK10 7.82 3:02840477 Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form%2C most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica.
AT3G11930 gene 7.68 3:03776177 Adenine nucleotide alpha hydrolases-like superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to stress%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016)%2C Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Universal stress protein A (InterPro:IPR006015)%3B BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G58450.1)%3B Has 5625 Blast hits to 5442 proteins in 1151 species: Archae - 389%3B Bacteria - 4083%3B Metazoa - 138%3B Fungi - 112%3B Plants - 752%3B Viruses - 0%3B Other Eukaryotes - 151 (source: NCBI BLink).
AT3G08920 gene 7.55 3:02712236 Rhodanese/Cell cycle control phosphatase superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763)%3B BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G42220.1)%3B Has 237 Blast hits to 237 proteins in 53 species: Archae - 0%3B Bacteria - 52%3B Metazoa - 3%3B Fungi - 0%3B Plants - 146%3B Viruses - 0%3B Other Eukaryotes - 36 (source: NCBI BLink).
AT3G13400 gene sks13 7.45 3:04354923 SKU5 similar 13 (sks13)%3B FUNCTIONS IN: oxidoreductase activity%2C copper ion binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Multicopper oxidase%2C type 3 (InterPro:IPR011707)%2C Cupredoxin (InterPro:IPR008972)%2C Multicopper oxidase%2C type 2 (InterPro:IPR011706)%2C Multicopper oxidase%2C type 1 (InterPro:IPR001117)%3B BEST Arabidopsis thaliana protein match is: SKU5 similar 14 (TAIR:AT1G55560.1)%3B Has 5231 Blast hits to 5185 proteins in 974 species: Archae - 4%3B Bacteria - 1633%3B Metazoa - 272%3B Fungi - 1906%3B Plants - 1265%3B Viruses - 0%3B Other Eukaryotes - 151 (source: NCBI BLink).
AT3G12510 gene 7.28 3:03967058 MADS-box family protein%3B BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT5G38620.1)%3B Has 66 Blast hits to 66 proteins in 9 species: Archae - 0%3B Bacteria - 1%3B Metazoa - 0%3B Fungi - 0%3B Plants - 65%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G10300 gene 7.27 3:03186038 Calcium-binding EF-hand family protein%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%3B BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G04170.1)%3B Has 35374 Blast hits to 19340 proteins in 989 species: Archae - 4%3B Bacteria - 4023%3B Metazoa - 19169%3B Fungi - 4508%3B Plants - 4170%3B Viruses - 287%3B Other Eukaryotes - 3213 (source: NCBI BLink).
AT3G13570 gene SCL30A 6.78 3:04429256 encodes an SC35-like splicing factor of 30 kD that is localized to the nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926.
AT3G15660 gene GRX4 6.52 3:05307694 glutaredoxin 4 (GRX4)%3B FUNCTIONS IN: metal ion binding%3B INVOLVED IN: cell redox homeostasis%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335)%2C Glutaredoxin (InterPro:IPR002109)%2C Glutaredoxin-related protein (InterPro:IPR004480)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT4G04950.1)%3B Has 5304 Blast hits to 5116 proteins in 1283 species: Archae - 26%3B Bacteria - 2189%3B Metazoa - 461%3B Fungi - 314%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 1929 (source: NCBI BLink).
AT3G10810 gene 6.33 3:03381628 zinc finger (C3HC4-type RING finger) family protein%3B BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G56590.1)%3B Has 18036 Blast hits to 9011 proteins in 812 species: Archae - 58%3B Bacteria - 3529%3B Metazoa - 8497%3B Fungi - 1587%3B Plants - 1132%3B Viruses - 68%3B Other Eukaryotes - 3165 (source: NCBI BLink).
AT3G15060 gene RABA1g 6.06 3:05069104 RAB GTPase homolog A1G (RABA1g)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: response to cadmium ion%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%2C Rab11-related (InterPro:IPR015595)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1F (TAIR:AT5G60860.1)%3B Has 27884 Blast hits to 27831 proteins in 751 species: Archae - 32%3B Bacteria - 137%3B Metazoa - 14654%3B Fungi - 4198%3B Plants - 2964%3B Viruses - 20%3B Other Eukaryotes - 5879 (source: NCBI BLink).
AT3G06125 gene 5.64 3:01848848 Unknown gene
AT3G06990 gene 5.64 3:02206387 Cysteine/Histidine-rich C1 domain family protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C DC1 (InterPro:IPR004146)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C C1-like (InterPro:IPR011424)%3B BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G07000.1)%3B Has 1311 Blast hits to 600 proteins in 20 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 0%3B Plants - 1303%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).
AT3G15640 gene 5.62 3:05298991 Rubredoxin-like superfamily protein%3B FUNCTIONS IN: cytochrome-c oxidase activity%2C cobalt ion binding%2C zinc ion binding%2C metal ion binding%3B LOCATED IN: mitochondrial envelope%2C mitochondrion%2C chloroplast thylakoid membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase%2C subunit Vb (InterPro:IPR002124)%3B BEST Arabidopsis thaliana protein match is: Rubredoxin-like superfamily protein (TAIR:AT1G80230.1)%3B Has 469 Blast hits to 469 proteins in 163 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 236%3B Fungi - 89%3B Plants - 104%3B Viruses - 0%3B Other Eukaryotes - 40 (source: NCBI BLink).
AT3G16750 gene 5.43 3:05700998 unknown protein%3B Has 4708 Blast hits to 1416 proteins in 195 species: Archae - 36%3B Bacteria - 1240%3B Metazoa - 1232%3B Fungi - 406%3B Plants - 191%3B Viruses - 23%3B Other Eukaryotes - 1580 (source: NCBI BLink).
AT3G08940 gene LHCB4.2 5.23 3:02717557 Lhcb4.2 protein (Lhcb4.2%2C protein involved in the light harvesting complex of photosystem II
AT3G19080 gene 5.08 3:06595344 SWIB complex BAF60b domain-containing protein%3B CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121)%2C SWIB domain (InterPro:IPR019835)%2C DEK%2C C-terminal (InterPro:IPR014876)%3B BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT1G49520.1)%3B Has 4780 Blast hits to 2475 proteins in 346 species: Archae - 0%3B Bacteria - 702%3B Metazoa - 1207%3B Fungi - 636%3B Plants - 993%3B Viruses - 61%3B Other Eukaryotes - 1181 (source: NCBI BLink).
AT3G08670 gene 5.00 3:02633663 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51540.1)%3B Has 48380 Blast hits to 29827 proteins in 1356 species: Archae - 46%3B Bacteria - 5589%3B Metazoa - 17361%3B Fungi - 13192%3B Plants - 2237%3B Viruses - 905%3B Other Eukaryotes - 9050 (source: NCBI BLink).
AT3G21240 gene 4CL2 4.89 3:07454269 encodes an isoform of 4-coumarate:CoA ligase (4CL)%2C which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid%2C caffeic acid%2C ferulic acid%2C 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate.
AT3G19650 gene 4.84 3:06823316 cyclin-related%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 5668 Blast hits to 3895 proteins in 309 species: Archae - 0%3B Bacteria - 250%3B Metazoa - 3167%3B Fungi - 631%3B Plants - 477%3B Viruses - 7%3B Other Eukaryotes - 1136 (source: NCBI BLink).
AT3G12460 gene 4.79 3:03954514 Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein%3B FUNCTIONS IN: 3'-5' exonuclease activity%2C nucleic acid binding%3B INVOLVED IN: nucleobase%2C nucleoside%2C nucleotide and nucleic acid metabolic process%3B LOCATED IN: intracellular%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%2C 3%26apos%3B-5%26apos%3B exonuclease (InterPro:IPR002562)%3B BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein (TAIR:AT3G12430.1)%3B Has 254 Blast hits to 240 proteins in 37 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 43%3B Fungi - 4%3B Plants - 202%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).
AT3G06710 gene 4.76 3:02118169 FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G32670.1)%3B Has 15 Blast hits to 15 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3%3B Fungi - 0%3B Plants - 12%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G09810 gene IDH-VI 4.54 3:03008499 Encodes a catalytic subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase
AT3G20130 gene CYP705A22 4.31 3:07026808 Encodes a member of the CYP705A family of cytochrome P450 enzymes. Mutants show altered gravitropic responses.
AT3G30770 gene 4.25 3:12445493 Eukaryotic aspartyl protease family protein%3B FUNCTIONS IN: aminoacyl-tRNA ligase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: translation%2C tRNA aminoacylation for protein translation%3B LOCATED IN: cytoplasm%3B CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase%2C class II (D/K/N)-like (InterPro:IPR018150)%2C Retroviral aspartyl protease (InterPro:IPR013242)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G29750.1)%3B Has 2 Blast hits to 1 proteins in 1 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G04920 gene 4.24 3:01360837 Ribosomal protein S24e family protein%3B FUNCTIONS IN: structural constituent of ribosome%2C nucleotide binding%3B INVOLVED IN: translation%2C ribosome biogenesis%3B LOCATED IN: in 7 components%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S24e (InterPro:IPR001976)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C Ribosomal S24e conserved site (InterPro:IPR018098)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein S24e family protein (TAIR:AT5G28060.1)%3B Has 888 Blast hits to 888 proteins in 327 species: Archae - 80%3B Bacteria - 0%3B Metazoa - 406%3B Fungi - 151%3B Plants - 124%3B Viruses - 0%3B Other Eukaryotes - 127 (source: NCBI BLink).
AT3G14690 gene CYP72A15 4.12 3:04937172 putative cytochrome P450
AT3G13440 gene 4.03 3:04377097 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein%3B FUNCTIONS IN: methyltransferase activity%2C nucleic acid binding%3B INVOLVED IN: methylation%2C acetate biosynthetic process from carbon monoxide%2C methanol oxidation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Methyltransferase small (InterPro:IPR007848)%2C DNA methylase%2C N-6 adenine-specific%2C conserved site (InterPro:IPR002052)%3B Has 2452 Blast hits to 2450 proteins in 945 species: Archae - 168%3B Bacteria - 1395%3B Metazoa - 177%3B Fungi - 134%3B Plants - 115%3B Viruses - 0%3B Other Eukaryotes - 463 (source: NCBI BLink).
AT3G12860 gene 3.96 3:04091567 NOP56-like pre RNA processing ribonucleoprotein%3B CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein%2C snoRNA-binding domain (InterPro:IPR002687)%2C NOP5%2C N-terminal (InterPro:IPR012974)%2C NOSIC (InterPro:IPR012976)%3B BEST Arabidopsis thaliana protein match is: homolog of nucleolar protein NOP56 (TAIR:AT1G56110.1)%3B Has 9295 Blast hits to 5418 proteins in 524 species: Archae - 248%3B Bacteria - 207%3B Metazoa - 3152%3B Fungi - 1154%3B Plants - 664%3B Viruses - 16%3B Other Eukaryotes - 3854 (source: NCBI BLink).
AT3G13432 gene 3.90 3:04371441 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B Has 3 Blast hits to 3 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 3%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G14310 gene PME3 3.81 3:04771833 encodes a pectin methylesterase%2C targeted by a cellulose binding protein (CBP) from the parasitic nematode Heterodera schachtii during parasitism.
AT3G09900 gene RABE1e 3.78 3:03034477 RAB GTPase homolog E1E (RABE1e)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: protein transport%2C small GTPase mediated signal transduction%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 8C (TAIR:AT5G03520.1)%3B Has 29798 Blast hits to 29728 proteins in 826 species: Archae - 21%3B Bacteria - 199%3B Metazoa - 15588%3B Fungi - 4257%3B Plants - 3488%3B Viruses - 20%3B Other Eukaryotes - 6225 (source: NCBI BLink).
AT3G05870 gene APC11 3.70 3:01753289 Subunit of the anaphase promoting complex%2C a ubiquitin ligase complex that regulates progression through the cell cycle.
AT3G08930 gene 3.68 3:02713312 LMBR1-like membrane protein%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: LMBR1-like membrane protein%2C conserved region (InterPro:IPR006876)%3B BEST Arabidopsis thaliana protein match is: LMBR1-like membrane protein (TAIR:AT5G01460.1)%3B Has 384 Blast hits to 384 proteins in 132 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 125%3B Fungi - 85%3B Plants - 80%3B Viruses - 0%3B Other Eukaryotes - 94 (source: NCBI BLink).
AT3G10290 gene 3.54 3:03183403 Nucleotide-sugar transporter family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853)%3B BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT5G04160.1)%3B Has 2900 Blast hits to 2898 proteins in 294 species: Archae - 4%3B Bacteria - 137%3B Metazoa - 666%3B Fungi - 435%3B Plants - 1330%3B Viruses - 0%3B Other Eukaryotes - 328 (source: NCBI BLink).
AT3G17609 gene HYH 3.50 3:06023844 Encodes a homolog of HY5 (HYH). Involved in phyB signaling pathway.
AT3G06420 gene ATG8H 3.49 3:01954990 autophagy 8h (ATG8H)%3B CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241)%3B BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G15580.1)%3B Has 1476 Blast hits to 1474 proteins in 273 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 722%3B Fungi - 178%3B Plants - 301%3B Viruses - 3%3B Other Eukaryotes - 272 (source: NCBI BLink).
AT3G20670 gene HTA13 3.48 3:07229390 Encodes HTA13%2C a histone H2A protein.
AT3G22740 gene HMT3 3.47 3:08032917 homocysteine S-methyltransferase (HMT3)
AT3G06840 gene 3.44 3:02156736 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49170.1)%3B Has 33 Blast hits to 33 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 33%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G05150 gene 3.43 3:01440014 Major facilitator superfamily protein%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%2C sugar:hydrogen symporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: nucleus%2C membrane%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G18840.1)%3B Has 29751 Blast hits to 29100 proteins in 2018 species: Archae - 566%3B Bacteria - 13294%3B Metazoa - 5300%3B Fungi - 6650%3B Plants - 2634%3B Viruses - 0%3B Other Eukaryotes - 1307 (source: NCBI BLink).
AT5G18240 gene MYR1 3.43 5:06028285 Encodes MYR1 (MYR1).
AT3G10720 gene 3.41 3:03354406 Plant invertase/pectin methylesterase inhibitor superfamily%3B FUNCTIONS IN: pectinesterase activity%3B INVOLVED IN: cell wall modification%3B LOCATED IN: cell wall%2C plant-type cell wall%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectinesterase%2C active site (InterPro:IPR018040)%2C Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Pectinesterase%2C catalytic (InterPro:IPR000070)%2C Pectin lyase fold (InterPro:IPR012334)%3B BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G04970.1)%3B Has 2403 Blast hits to 2363 proteins in 309 species: Archae - 6%3B Bacteria - 557%3B Metazoa - 1%3B Fungi - 195%3B Plants - 1619%3B Viruses - 0%3B Other Eukaryotes - 25 (source: NCBI BLink).
AT3G14830 gene 3.37 3:04982588 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53450.2)%3B Has 73 Blast hits to 73 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 73%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G15820 gene ROD1 3.35 3:05350814 Functions as phosphatidylcholine:diacylglycerol cholinephosphotransferase%2C a major reaction for the transfer of 18:1 into phosphatidylcholine for desaturation and also for the reverse transfer of 18:2 and 18:3 into the triacylglycerols synthesis pathway
AT3G20510 gene 3.22 3:07160677 Encodes a member of the Tmemb_14 family that is predicted to be localized to the membranes of the secretory pathway.
AT4G31470 gene 3.21 4:15261444 CAP (Cysteine-rich secretory proteins%2C Antigen 5%2C and Pathogenesis-related 1 protein) superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%2C extracellular region%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related%2C conserved site (InterPro:IPR018244)%2C Allergen V5/Tpx-1 related (InterPro:IPR001283)%2C Ves allergen (InterPro:IPR002413)%2C SCP-like extracellular (InterPro:IPR014044)%3B BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins%2C Antigen 5%2C and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT5G57625.1)%3B Has 3047 Blast hits to 2958 proteins in 378 species: Archae - 0%3B Bacteria - 60%3B Metazoa - 1662%3B Fungi - 337%3B Plants - 890%3B Viruses - 0%3B Other Eukaryotes - 98 (source: NCBI BLink).
AT3G21630 gene CERK1 3.16 3:07615357 LysM receptor-like kinase. Essential in the perception and transduction of the chitin oligosaccharide elicitor. Involved in chitin-mediated plant innate immunity. Located in the plasma membrane.
AT3G05155 gene 3.14 3:01448196 Major facilitator superfamily protein%3B FUNCTIONS IN: substrate-specific transmembrane transporter activity%2C carbohydrate transmembrane transporter activity%2C transporter activity%2C sugar:hydrogen symporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: integral to membrane%2C membrane%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G05400.1)%3B Has 23736 Blast hits to 23642 proteins in 1822 species: Archae - 433%3B Bacteria - 9900%3B Metazoa - 4398%3B Fungi - 6064%3B Plants - 1930%3B Viruses - 0%3B Other Eukaryotes - 1011 (source: NCBI BLink).
AT5G27080 gene CDC20.3 3.09 5:09529753 No expression of gene detected yet.
AT3G23050 gene IAA7 3.08 3:08194606 Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF%2C CSN and 26S proteasome components. Pseudomonas syringae type III effector AvrRpt2 stimulates AXR2 protein turnover.
AT5G67140 gene 3.07 5:26793880 F-box/RNI-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G21410.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT2G12557 gene 3.04 2:00000000 unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT2G12557]
AT3G16740 gene 3.04 3:05699310 F-box and associated interaction domains-containing protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated domain%2C type 1 (InterPro:IPR006527)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G18780.1)%3B Has 1538 Blast hits to 1469 proteins in 45 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1536%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).
AT3G09500 gene 3.02 3:02916922 Ribosomal L29 family protein %3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%2C ribosome biogenesis%3B LOCATED IN: ribosome%2C cytosolic large ribosomal subunit%2C nucleolus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854)%2C Ribosomal protein L29%2C conserved site (InterPro:IPR018254)%3B BEST Arabidopsis thaliana protein match is: Ribosomal L29 family protein (TAIR:AT5G02610.1)%3B Has 1251 Blast hits to 1251 proteins in 504 species: Archae - 156%3B Bacteria - 322%3B Metazoa - 302%3B Fungi - 146%3B Plants - 143%3B Viruses - 0%3B Other Eukaryotes - 182 (source: NCBI BLink).
AT3G06640 gene -3.03 3:02074185 PAS domain-containing protein tyrosine kinase family protein%3B FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity%2C kinase activity%3B INVOLVED IN: signal transduction%2C protein amino acid phosphorylation%2C regulation of transcription%2C DNA-dependent%3B EXPRESSED IN: egg cell%3B CONTAINS InterPro DOMAIN/s: PAS fold (InterPro:IPR013767)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C PAS (InterPro:IPR000014)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: PAS domain-containing protein tyrosine kinase family protein (TAIR:AT3G06620.1)%3B Has 125232 Blast hits to 123605 proteins in 4849 species: Archae - 220%3B Bacteria - 14873%3B Metazoa - 46551%3B Fungi - 11020%3B Plants - 33122%3B Viruses - 498%3B Other Eukaryotes - 18948 (source: NCBI BLink).
AT2G17723 gene -3.06 2:07700134 Encodes a defensin-like (DEFL) family protein.
AT3G04550 gene -3.07 3:01225919 unknown protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast stroma%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1)%3B Has 110 Blast hits to 110 proteins in 51 species: Archae - 0%3B Bacteria - 67%3B Metazoa - 1%3B Fungi - 0%3B Plants - 41%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
AT3G03850 gene SAUR26 -3.08 3:00983057 SAUR-like auxin-responsive protein family %3B CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676)%3B BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT3G03830.1)%3B Has 1105 Blast hits to 1099 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1104%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
AT1G43835 gene -3.09 1:16606612 transposable element gene [Source:TAIR;Acc:AT1G43835]
AT3G11500 gene -3.15 3:03620962 Small nuclear ribonucleoprotein family protein%3B FUNCTIONS IN: molecular_function unknown%3B LOCATED IN: nucleolus%2C nucleus%2C small nucleolar ribonucleoprotein complex%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163)%2C Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (InterPro:IPR006649)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B BEST Arabidopsis thaliana protein match is: probable small nuclear ribonucleoprotein G (TAIR:AT2G23930.1)%3B Has 1287 Blast hits to 1287 proteins in 269 species: Archae - 120%3B Bacteria - 0%3B Metazoa - 486%3B Fungi - 285%3B Plants - 213%3B Viruses - 0%3B Other Eukaryotes - 183 (source: NCBI BLink).
AT5G57010 gene -3.21 5:23067828 calmodulin-binding family protein%3B CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048)%3B BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT4G33050.3)%3B Has 390 Blast hits to 271 proteins in 57 species: Archae - 0%3B Bacteria - 20%3B Metazoa - 0%3B Fungi - 100%3B Plants - 264%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).
AT3G14452 gene -3.29 3:04851696 unknown protein%3B LOCATED IN: endomembrane system%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT3G13450 gene DIN4 -3.33 3:04382198 branched chain alpha-keto acid dehydrogenase E1 beta
AT5G61740 gene ABCA10 -3.36 5:24808406 member of ATH subfamily
AT4G28250 gene EXPB3 -3.37 4:13999625 putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al%2C 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
AT2G45780 gene -3.41 2:18854555 Unknown gene
AT3G04610 gene FLK -3.45 3:01250553 flowering locus KH domain (FLK)%3B FUNCTIONS IN: RNA binding%2C nucleic acid binding%3B INVOLVED IN: positive regulation of flower development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: K Homology%2C type 1%2C subgroup (InterPro:IPR018111)%2C K Homology (InterPro:IPR004087)%2C K Homology%2C type 1 (InterPro:IPR004088)%3B BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G26000.1)%3B Has 8156 Blast hits to 5360 proteins in 381 species: Archae - 0%3B Bacteria - 269%3B Metazoa - 3587%3B Fungi - 776%3B Plants - 1209%3B Viruses - 216%3B Other Eukaryotes - 2099 (source: NCBI BLink).
AT3G19960 gene ATM1 -3.46 3:06948774 member of Myosin-like proteins
AT3G09162 gene -3.51 3:02807214 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: stem%2C root%2C inflorescence%2C cultured cell%2C leaf%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).
AT3G17630 gene CHX19 -3.51 3:06028688 member of Putative Na+/H+ antiporter family
AT3G59330 gene -3.55 3:21926961 Eukaryotic protein of unknown function (DUF914)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF914%2C eukaryotic (InterPro:IPR009262)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF914) (TAIR:AT3G59340.1)%3B Has 389 Blast hits to 389 proteins in 130 species: Archae - 0%3B Bacteria - 16%3B Metazoa - 119%3B Fungi - 92%3B Plants - 118%3B Viruses - 0%3B Other Eukaryotes - 44 (source: NCBI BLink).
AT3G15110 gene -3.56 3:05084278 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast thylakoid membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3082 (InterPro:IPR021434)%3B Has 77 Blast hits to 77 proteins in 38 species: Archae - 0%3B Bacteria - 37%3B Metazoa - 0%3B Fungi - 0%3B Plants - 39%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
AT1G44094 gene -3.58 1:16763285 unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT1G44094]
AT3G14430 gene -3.58 3:04824158 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to oxidative stress%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 16 Blast hits to 16 proteins in 7 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 16%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT5G54215 gene -3.58 5:22010062 Encodes a defensin-like (DEFL) family protein.
AT3G13674 gene -3.59 3:04474620 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 11 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55205.1)%3B Has 76 Blast hits to 76 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 76%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G16640 gene TCTP -3.69 3:05669317 Encodes a protein homologous to translationally controlled tumor protein (TCTP) from Drosophila. In flies%2C TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs%2C generated through RNAi%2C are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well.
AT1G61550 gene -3.73 1:22704198 S-locus lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C recognition of pollen%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: sperm cell%2C root%3B CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480)%2C PAN-2 domain (InterPro:IPR013227)%2C Apple-like (InterPro:IPR003609)%2C S-locus receptor kinase%2C C-terminal (InterPro:IPR021820)%2C EGF-like%2C type 3 (InterPro:IPR000742)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C S-locus glycoprotein (InterPro:IPR000858)%3B BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61490.1)%3B Has 121113 Blast hits to 119449 proteins in 4468 species: Archae - 96%3B Bacteria - 13448%3B Metazoa - 44854%3B Fungi - 10099%3B Plants - 34551%3B Viruses - 435%3B Other Eukaryotes - 17630 (source: NCBI BLink).
AT3G14940 gene PPC3 -3.83 3:05025184 Encodes a cytosolic phosphoenolpyruvate carboxylase (PEPC) that has activity when expressed in E.coli. Its mRNA is most abundantly expressed in roots and siliques. PPC3 belongs to the plant-type PEPC family. It can form an enzymatically active complex with a castor bean ortholog of PPC4%2C which encodes a bacterial-type PEPC.
AT3G18090 gene NRPD2B -3.83 3:06194509 Encodes a subunit of RNA polymerase IV (aka RNA polymerase D). NRPD2b is closely related to NRPD2a%2C but has lower levels of transcription and does not affect endogenous siRNA when mutated.
AT3G07030 gene -4.04 3:02222526 Alba DNA/RNA-binding protein%3B FUNCTIONS IN: nucleic acid binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Alba%2C DNA/RNA-binding protein (InterPro:IPR002775)%3B BEST Arabidopsis thaliana protein match is: Alba DNA/RNA-binding protein (TAIR:AT1G76010.1)%3B Has 449 Blast hits to 441 proteins in 135 species: Archae - 3%3B Bacteria - 20%3B Metazoa - 178%3B Fungi - 24%3B Plants - 137%3B Viruses - 0%3B Other Eukaryotes - 87 (source: NCBI BLink).
AT3G16450 gene JAL33 -4.05 3:05588292 Mannose-binding lectin superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to zinc ion%2C response to cold%3B LOCATED IN: nucleus%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C seedling growth%3B CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229)%3B BEST Arabidopsis thaliana protein match is: myrosinase-binding protein-like protein-300B (TAIR:AT3G16440.1)%3B Has 1665 Blast hits to 784 proteins in 42 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 2%3B Plants - 1654%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).
AT3G09070 gene OPS -4.18 3:02768641 Encodes a a polarly localised membrane-associated protein that regulates phloem differentiation entry.
AT3G16390 gene NSP3 -4.24 3:05562400 Encodes a nitrile-specifier protein NSP3. NSP3 is one out of five (At3g16400/NSP1%2C At2g33070/NSP2%2C At3g16390/NSP3%2C At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile%2C but not epithionitrile or thiocyanate formation.
AT3G06950 gene -4.40 3:02192685 Pseudouridine synthase family protein%3B FUNCTIONS IN: pseudouridine synthase activity%3B INVOLVED IN: pseudouridine synthesis%2C RNA modification%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pseudouridine synthase%2C catalytic domain (InterPro:IPR020103)%2C Pseudouridine synthase I%2C TruA%2C N-terminal (InterPro:IPR020094)%2C Pseudouridine synthase I%2C TruA%2C alpha/beta domain (InterPro:IPR020097)%2C Pseudouridine synthase I%2C TruA%2C C-terminal (InterPro:IPR020095)%2C Pseudouridine synthase I%2C TruA (InterPro:IPR001406)%3B BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G34150.1)%3B Has 9137 Blast hits to 9127 proteins in 2768 species: Archae - 169%3B Bacteria - 5633%3B Metazoa - 320%3B Fungi - 238%3B Plants - 169%3B Viruses - 0%3B Other Eukaryotes - 2608 (source: NCBI BLink).
AT3G20440 gene EMB2729 -4.41 3:07123182 Encodes BE1%2C a putative glycoside hydrolase. Involved in organogenesis and somatic embryogenesis by regulating carbohydrate metabolism. Mutation in BE1 has pleotrophic effect on the whole plant development.
AT3G11900 gene ANT1 -4.43 3:03758452 encodes an amino acid transporter that transports aromatic and neutral amino acids%2C IAA%2C and 2%2C4-D. Expressed in all tissues with highest abundance in flowers and cauline leaves. a member of a small gene family in Arabidopsis and represents a new class of amino acid transporters.
AT3G15500 gene NAC3 -4.44 3:05234457 Encodes an ATAF-like NAC-domain transcription factor that doesn't contain C-terminal sequences shared by CUC1%2C CUC2 and NAM. Note: this protein (AtNAC3) is not to be confused with the protein encoded by locus AT3G29035%2C which%2C on occasion%2C has also been referred to as AtNAC3.
AT3G07130 gene PAP15 -4.73 3:02255710 Encodes PAP15%2C a purple acid phosphatase with phytase activity. Expression of PAP15 is developmentally and temporally regulated%2C with strong expression at the early stages of seedling growth and pollen germination. The expression is also organ/tissue-specific%2C with strongest expression in the vasculature%2C pollen grains%2C and roots. Recombinant PAP protein exhibits broad substrate specificity with moderate phytase activity. PAP15 likely mobilizes phosphorus reserves in plants%2C particularly during seed and pollen germination.
AT3G14650 gene CYP72A11 -4.83 3:04922131 putative cytochrome P450
AT3G17390 gene MTO3 -5.08 3:05952187 S-adenosylmethionine synthetase
AT3G12390 gene -5.14 3:03942257 Nascent polypeptide-associated complex (NAC)%2C alpha subunit family protein%3B INVOLVED IN: response to salt stress%3B LOCATED IN: cytosolic ribosome%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (InterPro:IPR000449)%2C Nascent polypeptide-associated complex%2C alpha subunit (InterPro:IPR016641)%2C Nascent polypeptide-associated complex NAC (InterPro:IPR002715)%3B BEST Arabidopsis thaliana protein match is: nascent polypeptide-associated complex subunit alpha-like protein 3 (TAIR:AT5G13850.1)%3B Has 5275 Blast hits to 2514 proteins in 367 species: Archae - 69%3B Bacteria - 684%3B Metazoa - 1880%3B Fungi - 785%3B Plants - 552%3B Viruses - 60%3B Other Eukaryotes - 1245 (source: NCBI BLink).
AT3G07430 gene YLMG1-1 -5.16 3:02379128 YLMG1-1%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: nucleoid organization%2C chloroplast fission%2C embryo development ending in seed dormancy%3B LOCATED IN: chloroplast%2C chloroplast envelope%2C thylakoid membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function YGGT (InterPro:IPR003425)%3B BEST Arabidopsis thaliana protein match is: YGGT family protein (TAIR:AT4G27990.1)%3B Has 784 Blast hits to 784 proteins in 294 species: Archae - 0%3B Bacteria - 502%3B Metazoa - 0%3B Fungi - 0%3B Plants - 124%3B Viruses - 0%3B Other Eukaryotes - 158 (source: NCBI BLink).
AT2G39250 gene SNZ -5.18 2:16388691 Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene%2C SCHLAFMUTZE (SMZ)%2C share a signature with partial complementarity to the miR172 microRNA%2C whose precursor is induced upon flowering.
AT3G13470 gene Cpn60beta2 -5.26 3:04389215 Encodes a subunit of chloroplasts chaperonins that are involved in mediating the folding of newly synthesized%2C translocated%2C or stress-denatured proteins. Cpn60 subunits are: Cpn60alpha1 (At2g28000)%2C AtCpn60alpha2 (At5g18820)%2C AtCpn60beta1 (At1g55490)%2C AtCpn60beta2 (At3g13470)%2C AtCpn60beta3 (At5g56500)%2C AtCpn60beta4 (At1g26230).
AT3G66658 gene ALDH22A1 -5.26 3:02094998 Encodes a putative aldehyde dehydrogenase. The gene is not responsive to osmotic stress and is expressed constitutively at a low level in plantlets and root cultures.
AT3G07400 gene -5.37 3:02367222 lipase class 3 family protein%3B FUNCTIONS IN: triglyceride lipase activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Lipase%2C class 3 (InterPro:IPR002921)%3B Has 393 Blast hits to 389 proteins in 69 species: Archae - 0%3B Bacteria - 12%3B Metazoa - 12%3B Fungi - 52%3B Plants - 275%3B Viruses - 0%3B Other Eukaryotes - 42 (source: NCBI BLink).
AT3G07950 gene -6.72 3:02531773 rhomboid protein-related%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1751%2C integral membrane%2C eukaryotic (InterPro:IPR013861)%3B Has 573 Blast hits to 573 proteins in 252 species: Archae - 14%3B Bacteria - 156%3B Metazoa - 119%3B Fungi - 151%3B Plants - 78%3B Viruses - 0%3B Other Eukaryotes - 55 (source: NCBI BLink).
AT3G10840 gene -6.98 3:03390153 alpha/beta-Hydrolases superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C catalytic activity%3B LOCATED IN: chloroplast envelope%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639)%2C Alpha/beta hydrolase fold-1 (InterPro:IPR000073)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G15490.1)%3B Has 7044 Blast hits to 6961 proteins in 1208 species: Archae - 69%3B Bacteria - 5119%3B Metazoa - 311%3B Fungi - 102%3B Plants - 308%3B Viruses - 4%3B Other Eukaryotes - 1131 (source: NCBI BLink).
AT3G16530 gene -7.12 3:05624326 Lectin like protein whose expression is induced upon treatment with chitin oligomers.
AT3G16460 gene JAL34 -7.74 3:05592491 Mannose-binding lectin superfamily protein%3B FUNCTIONS IN: copper ion binding%3B INVOLVED IN: response to cold%3B LOCATED IN: cytosol%2C nucleus%2C membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229)%3B BEST Arabidopsis thaliana protein match is: myrosinase-binding protein 1 (TAIR:AT1G52040.1)%3B Has 154784 Blast hits to 42550 proteins in 2542 species: Archae - 433%3B Bacteria - 67678%3B Metazoa - 26922%3B Fungi - 9328%3B Plants - 12326%3B Viruses - 2371%3B Other Eukaryotes - 35726 (source: NCBI BLink).
AT3G16420 gene PBP1 -7.91 3:05579290 The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular chaperone that facilitates the correct polymerization of PYK10%2C when tissues are damaged and subcellular structures are destroyed by pests.
AT3G16520 gene UGT88A1 -8.17 3:05618408 UDP-glucosyl transferase 88A1 (UGT88A1)%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213)%3B BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1)%3B Has 7498 Blast hits to 7448 proteins in 453 species: Archae - 0%3B Bacteria - 251%3B Metazoa - 2053%3B Fungi - 26%3B Plants - 4988%3B Viruses - 120%3B Other Eukaryotes - 60 (source: NCBI BLink).
AT3G10020 gene -8.28 3:03090806 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to oxidative stress%2C anaerobic respiration%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B Has 47 Blast hits to 47 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G17880 gene TDX -8.56 3:06123341 Encodes a thioredoxin-like disulfide reductase. The protein interacts with the yeast Hsp70 protein Ssb2 in vitro. This interaction is sensitive to the redox status of the thioredoxin domain of AtTDX.
AT3G17890 gene -9.29 3:06127001 unknown protein%3B Has 31 Blast hits to 31 proteins in 12 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 5%3B Fungi - 10%3B Plants - 12%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT3G17940 gene -11.28 3:06143414 Galactose mutarotase-like superfamily protein%3B FUNCTIONS IN: isomerase activity%2C carbohydrate binding%2C aldose 1-epimerase activity%2C catalytic activity%3B INVOLVED IN: galactose metabolic process%2C hexose metabolic process%2C carbohydrate metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013)%2C Aldose 1-epimerase (InterPro:IPR008183)%2C Aldose 1-epimerase%2C subgroup (InterPro:IPR015443)%2C Glycoside hydrolase-type carbohydrate-binding%2C subgroup (InterPro:IPR014718)%3B BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT3G47800.1)%3B Has 4707 Blast hits to 4700 proteins in 1470 species: Archae - 28%3B Bacteria - 3220%3B Metazoa - 276%3B Fungi - 257%3B Plants - 219%3B Viruses - 0%3B Other Eukaryotes - 707 (source: NCBI BLink).
AT3G18910 gene ETP2 -11.97 3:06521569 EIN2 targeting protein2 (ETP2)%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated domain%2C type 1 (InterPro:IPR006527)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G19410.1)%3B Has 1424 Blast hits to 1375 proteins in 38 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1422%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).
AT3G17430 gene -13.28 3:05965869 Nucleotide/sugar transporter family protein
AT3G15950 gene NAI2 -15.63 3:05397541 Similar to TSK-associating protein 1 (TSA1)%2C contains 10 EFE repeats%2C a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.