Interaction network for MSAT200897
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Show the eQTL profiles of traits with a LOD score above the threshold at the selected locus.
Trait (count=13) Type Name LOD score Position Description
AT2G02790 gene IQD29 21.73 2:00787885 Encodes a microtubule-associated protein.
AT2G02400 gene 21.33 2:00631140 NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: coenzyme binding%2C binding%2C cinnamoyl-CoA reductase activity%2C catalytic activity%3B INVOLVED IN: lignin biosynthetic process%2C cellular metabolic process%2C metabolic process%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G58490.1)%3B Has 17462 Blast hits to 17447 proteins in 2524 species: Archae - 423%3B Bacteria - 8786%3B Metazoa - 654%3B Fungi - 1071%3B Plants - 2738%3B Viruses - 70%3B Other Eukaryotes - 3720 (source: NCBI BLink).
AT2G03870 gene EMB2816 8.72 2:01179971 Small nuclear ribonucleoprotein family protein%3B CONTAINS InterPro DOMAIN/s: U6 snRNA-associated Sm-like protein LSm7 (InterPro:IPR017132)%2C Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163)%2C Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (InterPro:IPR006649)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B BEST Arabidopsis thaliana protein match is: probable small nuclear ribonucleoprotein G (TAIR:AT2G23930.1)%3B Has 1450 Blast hits to 1450 proteins in 289 species: Archae - 222%3B Bacteria - 0%3B Metazoa - 489%3B Fungi - 323%3B Plants - 216%3B Viruses - 0%3B Other Eukaryotes - 200 (source: NCBI BLink).
AT2G03270 gene 8.72 2:00993748 DNA-binding protein%2C putative%3B FUNCTIONS IN: hydrolase activity%2C nucleoside-triphosphatase activity%2C DNA binding%2C nucleotide binding%2C ATP binding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit (InterPro:IPR006935)%2C DNA helicase%2C putative (InterPro:IPR004483)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G35970.1)%3B Has 6736 Blast hits to 5857 proteins in 1106 species: Archae - 209%3B Bacteria - 2506%3B Metazoa - 1275%3B Fungi - 1034%3B Plants - 659%3B Viruses - 7%3B Other Eukaryotes - 1046 (source: NCBI BLink).
AT2G02470 gene AL6 7.84 2:00652564 Encodes a member of the Alfin1-like family of nuclear-localized PHD (plant homeodomain) domain containing proteins that acts as a novel upstream regulator of root hair formation during Pi starvation. All AL proteins except AL3 bind to di- or trimethylated histone H3 (H3K4me3/2). Members of this family include: AT5G05610 (AL1)%2C AT3G11200 (AL2)%2C AT3G42790 (AL3)%2C AT5G26210 (AL4)%2C AT5G20510 (AL5)%2C AT2G02470 (AL6)%2C AT1G14510 (AL7).
AT2G02410 gene 7.78 2:00632634 unknown protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF901 (InterPro:IPR010298)%3B Has 1151 Blast hits to 1151 proteins in 597 species: Archae - 0%3B Bacteria - 1105%3B Metazoa - 0%3B Fungi - 0%3B Plants - 42%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).
AT2G04690 gene 5.76 2:01644456 Pyridoxamine 5'-phosphate oxidase family protein%3B FUNCTIONS IN: FMN binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: vacuole%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cellular repressor of E1A-stimulated genes (CREG) (InterPro:IPR014631)%2C FMN-binding split barrel (InterPro:IPR012349)%2C FMN-binding split barrel%2C related (InterPro:IPR009002)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT2G03410 gene 5.64 2:01033598 Mo25 family protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: sepal%2C male gametophyte%2C flower%2C stamen%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Mo25-like (InterPro:IPR013878)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: Mo25 family protein (TAIR:AT5G47540.1)%3B Has 558 Blast hits to 558 proteins in 186 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 211%3B Fungi - 140%3B Plants - 153%3B Viruses - 0%3B Other Eukaryotes - 54 (source: NCBI BLink).
AT2G05830 gene 5.19 2:02229539 Encodes a 5-methylthioribose-1-phosphate isomerase.
AT2G02360 gene PP2-B10 -5.44 2:00619323 Encodes an F-box protein containing a Nictaba-related lectin domain that can act as a carbohydrate-binding protein.
AT2G02350 gene SKIP3 -6.21 2:00617414 encodes a protein containing an F-box domain and physically interacts with SCF subunit SKP1/ASK1. The protein also exhibits similarity in sequence to phloem protein 2 (PP2) from cucumber.
AT2G02730 gene -9.87 2:00764547 Protein of unknown function (DUF1664)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G27000.1)%3B Has 150 Blast hits to 150 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 150%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT2G02230 gene PP2-B1 -11.52 2:00589945 phloem protein 2-B1 (PP2-B1)%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G02240.1)%3B Has 552 Blast hits to 533 proteins in 37 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 552%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).