AT5G09250
gene
KIWI
22.10
5:02875136
putative transcriptional co-activator (KIWI) mRNA%2C complete
AT5G05750
gene
10.55
5:01727368
DNAJ heat shock N-terminal domain-containing protein%3B FUNCTIONS IN: unfolded protein binding%2C heat shock protein binding%3B INVOLVED IN: protein folding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%2C Heat shock protein DnaJ%2C N-terminal (InterPro:IPR001623)%2C Heat shock protein DnaJ (InterPro:IPR003095)%2C Tetratricopeptide repeat-containing (InterPro:IPR013026)%2C Tetratricopeptide repeat (InterPro:IPR019734)%2C Heat shock protein DnaJ%2C conserved site (InterPro:IPR018253)%3B BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ%2C N-terminal with domain of unknown function (DUF1977) (TAIR:AT3G57340.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G09630
gene
10.45
5:02985766
LisH/CRA/RING-U-box domains-containing protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C CTLH%2C C-terminal LisH motif (InterPro:IPR006595)%2C LisH dimerisation motif (InterPro:IPR006594)%2C Ran binding protein-like%2C CRA domain (InterPro:IPR013144)%3B BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT2G22690.2)%3B Has 826 Blast hits to 826 proteins in 191 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 373%3B Fungi - 219%3B Plants - 140%3B Viruses - 0%3B Other Eukaryotes - 94 (source: NCBI BLink).
AT5G10400
gene
8.76
5:03270172
Histone superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: chloroplast%2C nucleosome%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10390.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G10140
gene
FLC
8.18
5:03173382
MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization%2C FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization%2C but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression%2C whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3? to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.
AT5G04520
gene
6.17
5:01289885
Protein of unknown function DUF455%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF455 (InterPro:IPR007402)%2C Protein of unknown function UCP012318 (InterPro:IPR011197)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF455 (TAIR:AT1G06240.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G08520
gene
6.05
5:02755144
Duplicated homeodomain-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ (InterPro:IPR015609)%2C SANT%2C eukarya (InterPro:IPR017884)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%2C SANT%2C DNA-binding (InterPro:IPR001005)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Homeodomain-like (InterPro:IPR009057)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like transcriptional regulator (TAIR:AT5G23650.1)%3B Has 2184 Blast hits to 2148 proteins in 187 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 113%3B Fungi - 60%3B Plants - 1413%3B Viruses - 0%3B Other Eukaryotes - 588 (source: NCBI BLink).
AT5G08630
gene
5.82
5:02798010
DDT domain-containing protein%3B CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501)%2C DDT domain (InterPro:IPR004022)%2C DDT domain%2C subgroup (InterPro:IPR018500)%2C WSTF/Acf1/Cbp146 (InterPro:IPR013136)%3B Has 7496 Blast hits to 4698 proteins in 418 species: Archae - 4%3B Bacteria - 337%3B Metazoa - 2683%3B Fungi - 719%3B Plants - 380%3B Viruses - 89%3B Other Eukaryotes - 3284 (source: NCBI BLink).
AT5G05200
gene
4.43
5:01544007
Protein kinase superfamily protein%3B LOCATED IN: chloroplast%2C plastoglobule%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G31390.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT1G80440
gene
4.16
1:30241452
Encodes a member of a family of F-box proteins%2C called the KISS ME DEADLY (KMD) family%2C that targets type-B ARR proteins for degradation and is involved in the negative regulation of the cytokinin response. Also named as KFB20%2C a member of a group of Kelch repeat F-box proteins that negatively regulate phenylpropanoid biosynthesis by targeting the phenypropanoid biosynthesis enzyme phenylalanine ammonia-lyase.
AT5G10870
gene
CM2
-3.97
5:03430497
Encodes chorismate mutase AtCM2.
AT5G32592
gene
-4.04
5:12228143
transposable element gene [Source:TAIR;Acc:AT5G32592]
AT1G53470
gene
MSL4
-4.10
1:19958380
mechanosensitive channel of small conductance-like 4 (MSL4)%3B INVOLVED IN: transmembrane transport%3B LOCATED IN: plasma membrane%2C membrane%3B CONTAINS InterPro DOMAIN/s: Membrane protein%2C At2g17000%2C predicted (InterPro:IPR016688)%2C Mechanosensitive ion channel MscS (InterPro:IPR006685)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 5 (TAIR:AT3G14810.1)%3B Has 3267 Blast hits to 3247 proteins in 1053 species: Archae - 163%3B Bacteria - 2328%3B Metazoa - 1%3B Fungi - 210%3B Plants - 229%3B Viruses - 0%3B Other Eukaryotes - 336 (source: NCBI BLink).
AT5G43500
gene
ARP9
-4.15
5:17469490
encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.
AT2G47220
gene
DUF5
-4.15
2:19383743
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
AT2G42340
gene
-4.65
2:17636204
unknown protein%3B Has 11 Blast hits to 11 proteins in 5 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 2%3B Plants - 6%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
AT5G09810
gene
ACT7
-5.16
5:03052062
Member of Actin gene family.Mutants are defective in germination and root growth.
AT5G11200
gene
UAP56b
-6.45
5:03567174
One of two genes encoding an ATP-dependent RNA helicase that localizes predominantly to euchromatic regions of Arabidopsis nuclei%2C and associates with genes transcribed by RNA polymerase II independently from the presence of introns. It is not detected at non-transcribed loci. It interacts with ssRNA%2C dsRNA and dsDNA%2C but not with ssDNA. Its ATPase activity is stimulated by RNA and dsDNA and its ATP-dependent RNA helicase activity unwinds dsRNA but not dsDNA.
AT5G09240
gene
-6.78
5:02873660
ssDNA-binding transcriptional regulator%3B FUNCTIONS IN: transcription coactivator activity%2C binding%2C DNA binding%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044)%2C Transcriptional coactivator p15 (InterPro:IPR003173)%3B BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT5G09250.1)%3B Has 231 Blast hits to 228 proteins in 83 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 88%3B Fungi - 36%3B Plants - 91%3B Viruses - 0%3B Other Eukaryotes - 16 (source: NCBI BLink).
AT5G07685
gene
-27.26
5:02441439
transposable element gene [Source:TAIR;Acc:AT5G07685]
