Interaction network for MSAT514
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Show the eQTL profiles of traits with a LOD score above the threshold at the selected locus.
Trait (count=32) Type Name LOD score Position Description
AT5G19590 gene 23.73 5:06610428 Protein of unknown function%2C DUF538%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF538 (TAIR:AT4G02360.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G22510 gene INV-E 14.57 5:07474635 Encodes a chloroplast-targeted alkaline/neutral invertase that is implicated in the development of the photosynthetic apparatus and nitrogen assimilation in seedlings to control the sucrose to hexose ratio.
AT1G55420 gene EDA11 13.32 1:20691591 embryo sac development arrest 11 (EDA11)%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: megagametogenesis%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C C1-like (InterPro:IPR011424)%3B BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G55380.1)%3B Has 31248 Blast hits to 2717 proteins in 273 species: Archae - 49%3B Bacteria - 26496%3B Metazoa - 873%3B Fungi - 230%3B Plants - 1563%3B Viruses - 57%3B Other Eukaryotes - 1980 (source: NCBI BLink).
AT5G23230 gene NIC2 13.13 5:07825858 nicotinamidase 2 (NIC2)%3B CONTAINS InterPro DOMAIN/s: Isochorismatase-like (InterPro:IPR000868)%3B BEST Arabidopsis thaliana protein match is: nicotinamidase 3 (TAIR:AT5G23220.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G22540 gene 10.81 5:07481397 Plant protein of unknown function (DUF247)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247%2C plant (InterPro:IPR004158)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G22550.2)%3B Has 1140 Blast hits to 1020 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1140%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G22560 gene 9.32 1:07970248 transposable element gene [Source:TAIR;Acc:AT1G22560]
AT5G22550 gene 8.97 5:07483863 Plant protein of unknown function (DUF247)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247%2C plant (InterPro:IPR004158)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G22560.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G21070 gene 8.26 5:07156063 unknown protein%3B Has 115 Blast hits to 115 proteins in 34 species: Archae - 1%3B Bacteria - 36%3B Metazoa - 0%3B Fungi - 0%3B Plants - 60%3B Viruses - 0%3B Other Eukaryotes - 18 (source: NCBI BLink).
AT5G19200 gene TSC10B 8.15 5:06458776 Encodes one of the Arabidopsis proteins (At3g06060/TSC10A and At5g19200/TSC10B) with significant similarity to the yeast 3-ketodihydrosphinganine (3-KDS) reductase%2C Tsc10p. Both TSC10A and TSC10B are bona fide 3-KDS reductase as shown by complementation experiment in yeast.
AT5G23520 gene 7.47 5:07928993 smr (Small MutS Related) domain-containing protein%3B CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625)%2C Domain of unknown function DUF1771 (InterPro:IPR013899)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT2G07570 gene 6.90 2:03175494 transposable element gene [Source:TAIR;Acc:AT2G07570]
AT1G62225 gene 6.00 1:22989550 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62000.1)%3B Has 41 Blast hits to 41 proteins in 5 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 1%3B Fungi - 2%3B Plants - 36%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT5G19460 gene NUDT20 5.44 5:06562749 nudix hydrolase homolog 20 (NUDT20)%3B FUNCTIONS IN: hydrolase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797)%2C NUDIX hydrolase domain (InterPro:IPR000086)%3B BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 24 (TAIR:AT5G19470.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT1G73990 gene SPPA 5.08 1:27824355 Encodes a putative protease SppA (SppA).
AT5G16970 gene AER 4.71 5:05575973 encodes a 2-alkenal reductase (EC 1.3.1.74)%2C plays a key role in the detoxification of reactive carbonyls
AT5G22700 gene 4.28 5:07545481 F-box/RNI-like/FBD-like domains-containing protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C FBD (InterPro:IPR013596)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C FBD-like (InterPro:IPR006566)%2C Leucine-rich repeat 2 (InterPro:IPR013101)%3B BEST Arabidopsis thaliana protein match is: FBD%2C F-box%2C Skp2-like and Leucine Rich Repeat domains containing protein (TAIR:AT5G22660.2)%3B Has 2254 Blast hits to 2213 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 2253%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G39270 gene 4.25 4:18276311 Leucine-rich repeat protein kinase family protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway%2C protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G16250.1)%3B Has 110613 Blast hits to 61451 proteins in 1666 species: Archae - 40%3B Bacteria - 5898%3B Metazoa - 27903%3B Fungi - 2307%3B Plants - 66902%3B Viruses - 93%3B Other Eukaryotes - 7470 (source: NCBI BLink).
AT5G19320 gene RANGAP2 4.19 5:06505092 Encodes RAN GTPase activating protein 2. The protein is localized to the nuclear envelope during interphase.
AT2G17440 gene PIRL5 4.00 2:07570989 Encodes PIRL5%2C a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct%2C plant-specific class of intracellular LRRs that likely mediate protein interactions%2C possibly in the context of signal transduction.
AT5G22830 gene MGT10 -3.94 5:07627597 Transmembrane magnesium transporter. One of nine family members.
AT5G19600 gene SULTR3%3B5 -4.07 5:06612815 Encodes sulfate transporter Sultr3%3B5.
AT5G05280 gene -4.11 5:01565447 Encodes a RING-finger E3 ligase protein that controls anther dehiscence by positively regulating the expression of DAD1 in the jasmonic acid biosynthesis pathway.
AT5G23920 gene -4.12 5:08073222 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52420.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G24155 gene -4.19 5:08179703 FAD/NAD(P)-binding oxidoreductase family protein%3B FUNCTIONS IN: oxidoreductase activity%3B INVOLVED IN: sterol biosynthetic process%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076)%3B BEST Arabidopsis thaliana protein match is: squalene monoxygenase 6 (TAIR:AT5G24160.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G23930 gene -4.32 5:08074441 Mitochondrial transcription termination factor family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690)%3B BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G62085.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT5G22110 gene DPB2 -5.27 5:07330825 Encodes a protein with similarity to DNA polymerase epsilon subunit B an essential gene that is required for DNA replication. Homozygous mutants are embryo lethal. Expressed in meristematic %2C rapidly dividing regions.
AT5G18610 gene -6.19 5:06192327 Encodes a receptor-like cytoplasmic kinase that is an immediate downstream component of the chitin receptor CERK1 and contributes to the regulation of chitin-induced immunity.
AT5G26570 gene PWD -6.62 5:09261479 chloroplastidic phosphoglucan%2C water dikinase (PWD) which is required for normal degradation of leaf starch in Arabidopsis. NMR analysis of the mutants%2C suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C3 position.
AT5G26770 gene -7.25 5:09407647 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05830.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G22320 gene -11.45 5:07387985 Leucine-rich repeat (LRR) family protein%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT4G03260.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT5G21090 gene -14.57 5:07164560 Leucine-rich repeat (LRR) family protein%3B INVOLVED IN: signal transduction%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G43740.1)%3B Has 79109 Blast hits to 18390 proteins in 732 species: Archae - 33%3B Bacteria - 1866%3B Metazoa - 5774%3B Fungi - 472%3B Plants - 66918%3B Viruses - 0%3B Other Eukaryotes - 4046 (source: NCBI BLink).
AT5G22730 gene -20.44 5:07551364 F-box/RNI-like/FBD-like domains-containing protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C FBD (InterPro:IPR013596)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C FBD-like (InterPro:IPR006566)%2C Leucine-rich repeat 2 (InterPro:IPR013101)%3B BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G22610.1)%3B Has 2101 Blast hits to 2057 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2101%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).