Interaction network for RSM_4_17.25
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Show the eQTL profiles of traits with a LOD score above the threshold at the selected locus.
Trait (count=6) Type Name LOD score Position Description
AT4G36390 gene 8.69 4:17194573 Methylthiotransferase%3B FUNCTIONS IN: 4 iron%2C 4 sulfur cluster binding%2C iron-sulfur cluster binding%2C transferase activity%2C catalytic activity%3B INVOLVED IN: RNA modification%2C tRNA modification%3B LOCATED IN: chloroplast%2C cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Methylthiotransferase (InterPro:IPR005839)%2C tRNA-i(6)A37 modification enzyme MiaB (InterPro:IPR006463)%2C Methylthiotransferase%2C conserved site (InterPro:IPR020612)%2C Elongator protein 3/MiaB/NifB (InterPro:IPR006638)%2C Methylthiotransferase%2C N-terminal (InterPro:IPR013848)%2C Radical SAM (InterPro:IPR007197)%2C Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792)%3B BEST Arabidopsis thaliana protein match is: Methylthiotransferase (TAIR:AT1G72090.1)%3B Has 15610 Blast hits to 15591 proteins in 2425 species: Archae - 356%3B Bacteria - 9631%3B Metazoa - 288%3B Fungi - 1%3B Plants - 108%3B Viruses - 0%3B Other Eukaryotes - 5226 (source: NCBI BLink).
AT4G36790 gene 7.02 4:17336123 Major facilitator superfamily protein%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%2C sugar:hydrogen symporter activity%3B INVOLVED IN: transmembrane transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846)%2C Major facilitator superfamily MFS-1 (InterPro:IPR011701)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G18590.1)%3B Has 13584 Blast hits to 13542 proteins in 1941 species: Archae - 325%3B Bacteria - 10929%3B Metazoa - 520%3B Fungi - 516%3B Plants - 316%3B Viruses - 4%3B Other Eukaryotes - 974 (source: NCBI BLink).
AT4G36660 gene 6.75 4:17285702 Protein of unknown function (DUF1195)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1195 (InterPro:IPR010608)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1195) (TAIR:AT5G65650.1)%3B Has 67 Blast hits to 67 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 67%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G37370 gene CYP81D8 6.05 4:17569740 member of CYP81D
AT4G36650 gene PBRP 6.04 4:17283033 Encodes a protein with similarity to the general transcription factor TFIIB. pBRP binds rDNA sequences in vitro. pBRP has been localized to the outer face of the plastid membrane with GFP fusion however%2C under conditions of proteosome inhibition it is found in the nucleus.
AT4G32650 gene KAT3 5.55 4:15751271 Encodes KAT3%2C a member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1. The Shaker family K+ ion channels include five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inwardly rectifying conductance): AKT1 (AT2G26650)%2C AKT5 (AT4G32500) and SPIK (also known as AKT6%2C AT2G25600)%3B II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290)%3B III (weakly inward rectifying channel): AKT2 (AT4G22200)%3B IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1%2C AT4G32650)%3B V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).