Encodes AHP5%2C one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1)%2C AT3G29350 (AHP2)%2C AT5G39340 (AHP3)%2C AT3G16360 (AHP4)%2C AT1G03430 (AHP5) and AT1G80100 (AHP6).
Encodes a member of a domesticated transposable element gene family MUSTANG. Members of this family are derived from transposable elements genes but gained function in plant fitness and flower development. Known members include: AT3G04605 (MUG1)%2C AT2G30640 (MUG2)%2C AT1G06740 (MUG3)%2C AT5G16505 (MUG4)%2C AT3G06940 (MUG5)%2C AT5G48965 (MUG6)%2C AT3G05850 (MUG7) and AT5G34853 (MUG8).
vacuolar protein sorting-associated protein 2.3 (VPS2.3)%3B CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024)%3B BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G44560.1)%3B Has 1693 Blast hits to 1691 proteins in 237 species: Archae - 2%3B Bacteria - 12%3B Metazoa - 754%3B Fungi - 334%3B Plants - 366%3B Viruses - 0%3B Other Eukaryotes - 225 (source: NCBI BLink).
encodes a basic leucine zipper G-box binding factor that can bind to G-box motifs only as heterodimers with GBF2 or GBF3. A single amino acid change can confer G-box binding as homodimers.
Protein of unknown function (DUF1068)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1068) (TAIR:AT2G32580.1)%3B Has 119 Blast hits to 119 proteins in 15 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 116%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
Major facilitator superfamily protein%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: integral to membrane%2C membrane%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08890.1)%3B Has 23143 Blast hits to 22654 proteins in 1781 species: Archae - 437%3B Bacteria - 7818%3B Metazoa - 5011%3B Fungi - 6239%3B Plants - 2470%3B Viruses - 0%3B Other Eukaryotes - 1168 (source: NCBI BLink).
Encodes protein that interacts with CaMV movement protein. Colocalizes in the cytoplasm with the movement protein. Has similarity to mammalian proteins (such as the rat PRA1) which have been described as rab acceptors.
A UDP-glucose transferase localized in the phragmoplast. It has been co-purified with the callose synthase complex and may transfer UDP-glucose from sucrose synthase to the callose synthase and thus help form a substrate channel for the synthesis of callose at the forming cell plate. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. UGT1 encodes a protein with glucosyltransferase activity with high sequence homology to UGT2 (AT1G05530). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate%2C UDP-galactose%2C or UDP-rhamnose as the glycosyl donor. UGT1 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose. UGT1/UGT75B1 catalyzes the formation of the p-aminobenzoate-glucose ester in vitro and in vivo. It appears to be the enzyme predominantly responsible for pABA-Glc formation in Arabidopsis based on assays in leaves%2C flowers%2C and siliques.
Encodes a protein with phytochelatin synthase activity which binds Cd2+ and Cd-glutathione complexes with high affinity. The protein has been postulated to be involved in Cd2+ tolerance. AtPCS2 expression appears to be less than that of AtPCS1%2C explaining the inability of endogenous AtPCS2 to substitute for AtPCS1 in the cad1-3 mutant (AtPCS1 null).
Protein of unknown function (DUF295)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G30160.2)%3B Has 218 Blast hits to 208 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 218%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Ankyrin-repeat containing protein%3B BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G03670.1)%3B Has 105 Blast hits to 104 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 105%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes MAC3A%2C a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity.
Protein kinase superfamily protein%3B FUNCTIONS IN: protein tyrosine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C active site (InterPro:IPR008266)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G30740.1)%3B Has 112305 Blast hits to 111003 proteins in 4429 species: Archae - 103%3B Bacteria - 13312%3B Metazoa - 41447%3B Fungi - 9236%3B Plants - 31753%3B Viruses - 344%3B Other Eukaryotes - 16110 (source: NCBI BLink).
Endomembrane protein 70 protein family%3B CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240)%3B BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1)%3B Has 1520 Blast hits to 1507 proteins in 318 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 602%3B Fungi - 224%3B Plants - 440%3B Viruses - 0%3B Other Eukaryotes - 251 (source: NCBI BLink).
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1%2C At5g44420/PDF1.2a%2C At2g26020/PDF1.2b%2C At5g44430/PDF1.2c%2C At2g26010/PDF1.3%2C At1g19610/PDF1.4%2C At1g55010/PDF1.5%2C At2g02120/PDF2.1%2C At2g02100/PDF2.2%2C At2g02130/PDF2.3%2C At1g61070/PDF2.4%2C At5g63660/PDF2.5%2C At2g02140/PDF2.6%2C At5g38330/PDF3.1 and At4g30070/PDF3.2.
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1%2C ATERF-2%2C AND ATERF-5.
Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes%2C and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase%2C but the exact molecular function of this protein remains to be determined.
Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.
Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1%2C4%2C5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers%2C while no transcripts were detectable in maturated roots%2C stems%2C and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light%E2%80%93stimulated increase in cytosolic calcium ion.
Encodes ARI12 (ARIADNE 12). ARI12 belongs to a family of %E2%80%98RING between RING fingers' (RBR) domain proteins with E3 ligase activity. Expression of ARI12 is induced by UV-B exposure.
encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.
Encodes a choloroplast membrane protein CJD1 (Chloroplast J-like Domain 1). Predicted to contain a transit peptide%2C three transmembrane domains and an N-terminal J-like domain. Influences fatty acid composition of chloroplast lipids.
SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA%2C and has been shown to be phosphorylated by oat phytochrome A in vitro.
Encodes a cytosolic inosine nucleoside hydrolase. Transcript levels for this gene are elevated in older leaves suggesting that it may play a role in purine catabolism during senescence.
Encodes a protein with %26#946%3B-hexosaminidase activity (the enzyme is active with p-nitrophenyl-%26#946%3B-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-%26#946%3B-N-acetylgalactosaminide). Chitotriose-PA was digested almost completely overnight by a 50%25 ammonium sulfate fraction of a supernatant yeast expressing AtHEX3.
SAUR-like auxin-responsive protein family %3B CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676)%3B BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT4G34760.1)%3B Has 1265 Blast hits to 1250 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1264%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
Protein phosphatase 2C family protein%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C catalytic activity%3B INVOLVED IN: protein amino acid dephosphorylation%3B LOCATED IN: chloroplast%2C protein serine/threonine phosphatase complex%3B EXPRESSED IN: sperm cell%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (InterPro:IPR000222)%2C Protein phosphatase 2C-related (InterPro:IPR001932)%2C Protein phosphatase 2C (InterPro:IPR015655)%2C Protein phosphatase 2C%2C N-terminal (InterPro:IPR014045)%3B BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT2G30020.1)%3B Has 7376 Blast hits to 7203 proteins in 674 species: Archae - 10%3B Bacteria - 746%3B Metazoa - 1767%3B Fungi - 814%3B Plants - 2696%3B Viruses - 11%3B Other Eukaryotes - 1332 (source: NCBI BLink).
Encodes a UDP-glucosyltransferase%2C UGT74E2%2C that acts on IBA (indole-3-butyric acid) and affects auxin homeostasis. The transcript and protein levels of this enzyme are strongly induced by H2O2 and may allow integration of ROS (reactive oxygen species) and auxin signaling. This enzyme can also transfer glycosyl groups to several compounds related to the explosive TNT when this synthetic compound is taken up from the environment.
SAUR-like auxin-responsive protein family %3B CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676)%3B BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT2G18010.1)%3B Has 1361 Blast hits to 1344 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1360%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains%2C which function in phosphorylation-dependent protein%E2%80%93protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.
E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 (At3)%2C putative%2C E3 ubiquitin ligase%3B similar to fimbriata-associated protein fap1 GI:2673868 from (Antirrhinum majus. Interacts with F-box proteins.
Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis. C-terminal half of Tic110 functions as scaffolds for protein-protein interactions.
Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.
Ribosomal protein S19 family protein%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S15%2C eukaryotic/archaeal (InterPro:IPR005713)%2C Ribosomal protein S19/S15 (InterPro:IPR002222)%2C Ribosomal protein S19 conserved site (InterPro:IPR020934)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein S19 family protein (TAIR:AT5G09500.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
Encodes a protein shown to have carboxylesterase activity%2C methyl salicylate esterase activity%2C methyl jasmonate esterase activity%2C and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4%2C or MEGA9 in vitro.
Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling and is a positive modulator of natural leaf senescence. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF%2C CSN and 26S proteasome components.
Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.
CONTAINS InterPro DOMAIN/s: CBL-interacting protein kinase (InterPro:IPR020660)%2C Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47170.1)%3B Has 176 Blast hits to 176 proteins in 20 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 176%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid%2C but not in endosperm and integuments as in carrot. Post-embryonically%2C expression is found in hydathodes%2C stipules%2C root epidermis and emerging root hairs.
Encodes AZI1 (AZELAIC ACID INDUCED 1). Involved in the priming of salicylic acid induction and systemic immunity triggered by pathogen or azelaic acid.
Encodes a protein homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression down-regulated by cold temperature. It is involved in the desaturation of VLCFAs to make monounsaturated VLCFAs.
Protein of unknown function (DUF789)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT4G03420.1)%3B Has 266 Blast hits to 262 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 263%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members%2C two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose%2C presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff %26 Wolf Scheible%2C 2010%2C personal communication).
Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a closed conformation to suppress the NC80 motif in the absence of light. In response to blue light%2C the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an open conformation%2C resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.
Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling.
Protein of unknown function%2C DUF538%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF538 (TAIR:AT5G19860.1)%3B Has 529 Blast hits to 529 proteins in 37 species: Archae - 0%3B Bacteria - 12%3B Metazoa - 0%3B Fungi - 0%3B Plants - 516%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
Family of unknown function (DUF716) %3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904)%3B BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF716) (TAIR:AT1G55230.1)%3B Has 395 Blast hits to 395 proteins in 46 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 157%3B Fungi - 0%3B Plants - 236%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).
Protein of unknown function (DUF3511)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3511 (InterPro:IPR021899)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3511) (TAIR:AT5G11970.1)%3B Has 203 Blast hits to 203 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 203%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature%2C RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1%2C ATERF-2%2C AND ATERF-5.
encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.
Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets%2C much like ubiquitination%2C leading to post-translational modification of those targets.
Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.
Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). The protein undergoes spontaneous thiolation following treatment with the oxidant tert-butylhydroperoxide. It functions in vitro as a maleylacetoacetate isomerase and is likely to be involved in tyrosine catabolism.
Encodes eIF5A-2%2C a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950%2C eIF5A-2/At1g26630 and eIF5A-3/At1g69410.
Belongs to a clade of five Arabidopsis thaliana ABCG half-transporters that are required for synthesis of an effective suberin barrier in roots and seed coats (ABCG2%2C ABCG6%2C and ABCG20) and for synthesis of an intact pollen wall (ABCG1 and ABCG16).
The gene encoding Arabidopsis thaliana Allantoate Amidohydrolase (AtAAH)which catalyzes the allantoate deiminase reaction (EC 3.5.3.9)is expressed in all parts of the plant being consistent with a function in purine turnover in Arabidopsis.
Encodes an atypical dual-speci%26#64257%3Bcity phosphatase involved in the negative regulation of defense response to a bacterial pathogen%2C P. syringae pv. tomato.
encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.
Ribosomal protein L39 family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: ribosome%2C cytosolic large ribosomal subunit%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L39e%2C conserved site (InterPro:IPR020083)%2C Ribosomal protein L39e (InterPro:IPR000077)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L39 family protein (TAIR:AT4G31985.1)%3B Has 957 Blast hits to 957 proteins in 304 species: Archae - 223%3B Bacteria - 0%3B Metazoa - 399%3B Fungi - 107%3B Plants - 121%3B Viruses - 0%3B Other Eukaryotes - 107 (source: NCBI BLink).
Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt%2C mannitol%2C and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation.
Encodes a putative apoplastic peroxidase Prx37. Primarily expressed in the vascular bundles. Overexpression renders a dwarf phenotype with smaller plants and delayed development. Plants overexpressing Prx37 also shows an increase in the amount of esterified phenolic material associated with their walls.
Encodes a component of the TIC (translocon at the inner envelope membrane of chloroplasts) protein translocation machinery mediating the protein translocation across the inner envelope of plastids. The Arabidopsis genome encodes four Tic20 homologous proteins%2C AT1G04940(Tic20-I)%2C AT2G47840(Tic20-II)%2C AT4G03320(Tic20-IV) and AT5G55710(Tic20-V).
Encodes an (E%2CE)-alpha-farnesene synthase in the Col ecotype of Arabidopsis. This enzyme can also catalyze the formation of (E)-beta-ocimene as well as trace amounts of myrcene and other related compounds in vitro. The cytosolic localization of the protein may make it favor (E%2CE)-alpha-farnesene biosynthesis because the precursor of this product%2C FPP%2C is primarily cytosolic. Transcript levels for this gene increase in response to treatment with the jasmonic acid mimic coronalon or in response to the insect %3Ci%3EPlutella xylostella%3C/i%3E. TPS03 transcripts can also be detected in flowers. A similar protein from the C24 ecotype with one amino acid change (S267F) has a different substrate specificity.
Enodes a subunit of chloroplast RNA polymerase%2C confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.
Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction.
Encodes APG8%2C a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization is more abundant upon N starvation.
Along with JAG%2C it is involved in stamen and carpel development. Expression is limited to the adaxial side of lateral organs. Activated by AGAMOUS in a cal-1%2C ap1-1 background.
Similar to the tomato senescence-inducible chloroplast stay-green protein 1. It is upregulated during maximal senescence in the Arabidopsis life cycle%2C especially in senescent leaves. Acts antagonistically with SGR2 to balance chlorophyll catabolism in chloroplasts with the dismantling and remobilizing of other cellular components in senescing leaf cells.
Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins%3B their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular%2C and could be classified as a newly identified PR protein. It is stress responsive and can enhance its own expression.
Fatty acid desaturase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water%3B INVOLVED IN: oxidation reduction%2C lipid metabolic process%3B CONTAINS InterPro DOMAIN/s: Fatty acid desaturase%2C type 1%2C core (InterPro:IPR015876)%2C Fatty acid desaturase%2C type 1 (InterPro:IPR005804)%3B BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06360.1)%3B Has 3426 Blast hits to 3426 proteins in 822 species: Archae - 0%3B Bacteria - 1532%3B Metazoa - 799%3B Fungi - 234%3B Plants - 106%3B Viruses - 4%3B Other Eukaryotes - 751 (source: NCBI BLink).
SAUR-like auxin-responsive protein family %3B CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676)%3B BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT4G38860.1)%3B Has 1403 Blast hits to 1386 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1402%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
Encodes one of the closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays%2C it shows very little activity with the naturally occurring OPDA isomer. Shows activity towards 2%2C4%2C6-trinitrotoluene. Expressed predominately in root. Predicted to be a cytosolic protein.
Ribosomal protein L18ae family%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT1G53560.1)%3B Has 119 Blast hits to 119 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 119%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes a nuclear dsRNA binding protein. Involved in mRNA cleavage. The mutant is characterized by shorter stature%2C delayed flowering%2C leaf hyponasty%2C reduced fertility%2C decreased rate of root growth%2C and an altered root gravitropic response. It also exhibits less sensitivity to auxin and cytokinin.
Encodes SUVR1%2C one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1%2C SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus%2C and a SUVR specific region preceding the SET domain. Localized to the nucleolus%2C maybe involved in regulation of rRNA expression.
Protein of unknown function (DUF761)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: shoot apex%2C embryo%2C leaf whorl%2C flower%2C seed%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761%2C plant (InterPro:IPR008480)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G11230.1)%3B Has 88 Blast hits to 87 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 88%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes protein similar to yeast COX17%2C a copper-binding protein that mediates the delivery of Cu to the mitochondria for the assembly of a functional cytochrome oxidase complex.
Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode%2C Meloidogyne incognita. Localized in the plasma membrane.
molybdenum cofactor synthesis family protein%2C similar to Molybdenum cofactor synthesis protein 2 small subunit (Molybdopterin- synthase small subunit) (MOCS2A) (MOCO1-A) (Swiss-Prot:O96033) (Homo sapiens)%3B contains TIGRFAM TIGR01682: molybdopterin converting factor%2C subunit 1%3B sir loss-of-function mutants are resistant to sirtinol%2C a modulator of auxin signaling.
Encodes a mitochondrial glyoxalase 2 that can accommodate a number of different metal centers and with the predominant metal center being Fe(III)Zn(II).
Class III peroxidase Perx34. Expressed in roots%2C leaves and stems. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response.
Required for expression of CBF-controlled cold-responsive genes. Required for recruitment of the Mediator complex and RNA polymerase II to CBF-controlled cold-responsive genes.
Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis.
Pleckstrin homology (PH) domain superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993)%2C Pleckstrin homology (InterPro:IPR001849)%3B BEST Arabidopsis thaliana protein match is: pleckstrin homologue 1 (TAIR:AT2G29700.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
GO
domain
Definition
P-value
immune system process
biological_process
"Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats." [GO_REF:0000022, GOC:add, GOC:mtg_15nov05]
6.94e-03
peroxidase activity
molecular_function
"Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O." [EC:1.11.1.7]
3.61e-04
protein kinase activity
molecular_function
"Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP." [MetaCyc:PROTEIN-KINASE-RXN]
2.35e-02
ATP binding
molecular_function
"Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator." [ISBN:0198506732]
6.94e-03
protein phosphorylation
biological_process
"The process of introducing a phosphate group on to a protein." [GOC:hb]
2.35e-02
response to stress
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation)." [GOC:mah]
6.03e-03
defense response
biological_process
"Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack." [GOC:go_curators]
2.03e-02
immune response
biological_process
"Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat." [GO_REF:0000022, GOC:add, GOC:mtg_15nov05]
8.30e-03
chitin binding
molecular_function
"Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues." [GOC:jl, ISBN:0198506732]
8.30e-03
response to water
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water." [GOC:jl]
2.59e-02
response to biotic stimulus
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism." [GOC:hb]
7.33e-04
response to fungus
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus." [GOC:hb]
2.35e-02
systemic acquired resistance
biological_process
"The salicylic acid mediated response to a pathogen which confers broad spectrum resistance." [GOC:lr, ISBN:052143641]
6.03e-03
defense response, incompatible interaction
biological_process
"A response of a plant to a pathogenic agent that prevents the occurrence or spread of disease." [GOC:lr]
2.52e-02
UDP-glucosyltransferase activity
molecular_function
"Catalysis of the transfer of a glucosyl group from UDP-glucose to an acceptor molecule." [http://www.chem.qmul.ac.uk/iubmb/enzyme/reaction/polysacc/UDPsugar.html]
7.51e-03
response to external biotic stimulus
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external biotic stimulus, an external stimulus caused by, or produced by living things." [GOC:go_curators]
4.37e-04
innate immune response
biological_process
"Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens." [GO_REF:0000022, GOC:add, GOC:ebc, GOC:mtg_15nov05, GOC:mtg_sensu]
6.03e-03
defense response to fungus
biological_process
"Reactions triggered in response to the presence of a fungus that act to protect the cell or organism." [GOC:ai]
2.84e-03
response to stimulus
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." [GOC:ai, GOC:bf]
1.55e-02
response to other organism
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism." [GOC:ai]
3.61e-04
defense response to other organism
biological_process
"Reactions triggered in response to the presence of another organism that act to protect the cell or organism from damage caused by that organism." [GOC:dos]
