similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445)%2C Vigna unguiculata (gi:1854445)%2C NOT a cinnamyl-alcohol dehydrogenase
Encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme%2C which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is reduced during senescence%2C a process that involves jasmonic acid signalling pathway.
Encodes a hydroxypyruvate reductase that reduces HP to glycerate and shows even more activity with glyoxylate%2C a more upstream intermediate of the photorespiratory cycle. It is likely targeted to the chloroplast where it could provide a compensatory bypass for the reduction of HP and glyoxylate within this compartment.
Encodes a protein similar to glucose-6-phosphate dehydrogenase but%2C based on amino acid differences in the active site and lack of activity%2C does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment%2C and is not confirmed experimentally.
Protein of unknown function (DUF1262)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13520.1)%3B Has 101 Blast hits to 94 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 101%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes GSTU17 (Glutathione S-Transferase U17). Functions as a negative component of stress-mediated signal transduction pathways in drought and salt stress responses.
Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A%2C and poor activity towards the chloroplast NADP-malate dehydrogenase.
Encodes glutamyl-tRNA reductase. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins
similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445)%2C Vigna unguiculata (gi:1854445)%2C NOT a cinnamyl-alcohol dehydrogenase
Major facilitator superfamily protein%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: integral to membrane%2C membrane%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08890.1)%3B Has 23143 Blast hits to 22654 proteins in 1781 species: Archae - 437%3B Bacteria - 7818%3B Metazoa - 5011%3B Fungi - 6239%3B Plants - 2470%3B Viruses - 0%3B Other Eukaryotes - 1168 (source: NCBI BLink).
S2P-like putative metalloprotease%2C also contain transmembrane helices near their C-termini and many of them%2C five of seven%2C contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs%2C the previously reported NPDG motif (aa 442%E2%80%93454 in EGY1%2C Rudner et al.%2C 1999) and a newly defined GNLR motif (aa 171%E2%80%93179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.
Protein of unknown function (DUF295)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G30160.2)%3B Has 218 Blast hits to 208 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 218%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
F-box family protein%3B BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G22165.1)%3B Has 235 Blast hits to 233 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 235%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445)%2C Vigna unguiculata (gi:1854445)%2C NOT a cinnamyl-alcohol dehydrogenase
Endomembrane protein 70 protein family%3B CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240)%3B BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1)%3B Has 1520 Blast hits to 1507 proteins in 318 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 602%3B Fungi - 224%3B Plants - 440%3B Viruses - 0%3B Other Eukaryotes - 251 (source: NCBI BLink).
Protein kinase superfamily protein%3B FUNCTIONS IN: protein tyrosine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C active site (InterPro:IPR008266)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G30740.1)%3B Has 112305 Blast hits to 111003 proteins in 4429 species: Archae - 103%3B Bacteria - 13312%3B Metazoa - 41447%3B Fungi - 9236%3B Plants - 31753%3B Viruses - 344%3B Other Eukaryotes - 16110 (source: NCBI BLink).
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1%2C At5g44420/PDF1.2a%2C At2g26020/PDF1.2b%2C At5g44430/PDF1.2c%2C At2g26010/PDF1.3%2C At1g19610/PDF1.4%2C At1g55010/PDF1.5%2C At2g02120/PDF2.1%2C At2g02100/PDF2.2%2C At2g02130/PDF2.3%2C At1g61070/PDF2.4%2C At5g63660/PDF2.5%2C At2g02140/PDF2.6%2C At5g38330/PDF3.1 and At4g30070/PDF3.2.
Resistance gene%2C mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop)%2C kinase-2a%2C and putative kinase-3a domains%2C 13 imperfect leucine-rich repeats%2C a potential leucine zipper%2C and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.
Protein of unknown function (DUF581)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT1G74940.1)%3B Has 464 Blast hits to 464 proteins in 20 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 464%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Codes for a H+-driven%2C high affinity gamma-aminobutyric acid (GABA) transporter. Localized at the plasma membrane. In planta%2C AtGAT1 expression was highest in flowers and under conditions of elevated GABA concentrations such as wounding or senescence.
SRC2 specifically binds the peptide PIEPPPHH%2C and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting.
Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1%2C4%2C5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers%2C while no transcripts were detectable in maturated roots%2C stems%2C and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light%E2%80%93stimulated increase in cytosolic calcium ion.
Encodes a choloroplast membrane protein CJD1 (Chloroplast J-like Domain 1). Predicted to contain a transit peptide%2C three transmembrane domains and an N-terminal J-like domain. Influences fatty acid composition of chloroplast lipids.
Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.
SNARE associated Golgi protein family%3B CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414)%3B BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G22850.1)%3B Has 1732 Blast hits to 1729 proteins in 535 species: Archae - 6%3B Bacteria - 860%3B Metazoa - 122%3B Fungi - 106%3B Plants - 250%3B Viruses - 0%3B Other Eukaryotes - 388 (source: NCBI BLink).
Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment%3B although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1%2C At5g44420/PDF1.2a%2C At2g26020/PDF1.2b%2C At5g44430/PDF1.2c%2C At2g26010/PDF1.3%2C At1g19610/PDF1.4%2C At1g55010/PDF1.5%2C At2g02120/PDF2.1%2C At2g02100/PDF2.2%2C At2g02130/PDF2.3%2C At1g61070/PDF2.4%2C At5g63660/PDF2.5%2C At2g02140/PDF2.6%2C At5g38330/PDF3.1 and At4g30070/PDF3.2.
Encodes a vacuolar invertase betaFruct4. betaFruct4 is transported from the endoplasmic reticulum through the intermediate compartments as a membrane protein. The N-terminal cytoplasmic domain contains multiple sequence motifs that are involved at various stages in the trafficking of betaFruct4 from the ER to the central vacuole.
Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria. Though similar to mannitol dehydrogenases%2C this enzyme does not have mannitol dehydrogenase activity.
SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA%2C and has been shown to be phosphorylated by oat phytochrome A in vitro.
Protein phosphatase 2C family protein%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C catalytic activity%3B INVOLVED IN: protein amino acid dephosphorylation%3B LOCATED IN: chloroplast%2C protein serine/threonine phosphatase complex%3B EXPRESSED IN: sperm cell%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (InterPro:IPR000222)%2C Protein phosphatase 2C-related (InterPro:IPR001932)%2C Protein phosphatase 2C (InterPro:IPR015655)%2C Protein phosphatase 2C%2C N-terminal (InterPro:IPR014045)%3B BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT2G30020.1)%3B Has 7376 Blast hits to 7203 proteins in 674 species: Archae - 10%3B Bacteria - 746%3B Metazoa - 1767%3B Fungi - 814%3B Plants - 2696%3B Viruses - 11%3B Other Eukaryotes - 1332 (source: NCBI BLink).
Protein of unknown function (DUF1997)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C 4 anthesis%2C 4 leaf senescence stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1997 (InterPro:IPR018971)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1997) (TAIR:AT5G39530.1)%3B Has 157 Blast hits to 157 proteins in 60 species: Archae - 0%3B Bacteria - 84%3B Metazoa - 0%3B Fungi - 0%3B Plants - 50%3B Viruses - 0%3B Other Eukaryotes - 23 (source: NCBI BLink).
encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.
Encodes one of two redundant proteins (the other is WAPL2) that are involved in prophase removal of cohesion during meiosis. Double mutants with wapl2 exhibit reduced fertility due to defects in meiosis and also some abnormal embryo development in rare cases where embryos are formed.
Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.
PLAC8 family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461)%3B BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G05350.1)%3B Has 314 Blast hits to 313 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 13%3B Fungi - 8%3B Plants - 293%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Lactoylglutathione lyase / glyoxalase I family protein%3B CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360)%3B BEST Arabidopsis thaliana protein match is: Lactoylglutathione lyase / glyoxalase I family protein (TAIR:AT1G15380.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber%2C suggesting that this protein could potentially have carbohydrate binding capabilities.
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors%2C oxidoreductase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G14120.1)%3B Has 6919 Blast hits to 6851 proteins in 822 species: Archae - 0%3B Bacteria - 798%3B Metazoa - 89%3B Fungi - 567%3B Plants - 4661%3B Viruses - 0%3B Other Eukaryotes - 804 (source: NCBI BLink).
CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1726 (InterPro:IPR013562)%2C Domain of unknown function DUF699%2C exodeoxyribonuclease V alpha chain (InterPro:IPR007807)%3B BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1726) %3BPutative ATPase (DUF699) (TAIR:AT3G57940.1)%3B Has 1351 Blast hits to 1310 proteins in 616 species: Archae - 139%3B Bacteria - 698%3B Metazoa - 170%3B Fungi - 143%3B Plants - 51%3B Viruses - 0%3B Other Eukaryotes - 150 (source: NCBI BLink).
Protein of unknown function%2C DUF538%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF538 (TAIR:AT5G19860.1)%3B Has 529 Blast hits to 529 proteins in 37 species: Archae - 0%3B Bacteria - 12%3B Metazoa - 0%3B Fungi - 0%3B Plants - 516%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
tonoplast intrinsic protein 2%3B2 (TIP2%3B2)%3B FUNCTIONS IN: water channel activity%3B INVOLVED IN: response to salt stress%2C transport%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Major intrinsic protein%2C conserved site (InterPro:IPR022357)%2C Aquaporin (InterPro:IPR012269)%2C Major intrinsic protein (InterPro:IPR000425)%3B BEST Arabidopsis thaliana protein match is: tonoplast intrinsic protein 2%3B3 (TAIR:AT5G47450.1)%3B Has 10928 Blast hits to 10884 proteins in 2182 species: Archae - 82%3B Bacteria - 5178%3B Metazoa - 1485%3B Fungi - 421%3B Plants - 2525%3B Viruses - 2%3B Other Eukaryotes - 1235 (source: NCBI BLink).
Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl%2C ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers. Isoform of caleosin with a role as a peroxygenase involved in oxylipin metabolism during biotic and abiotic stress. Involved in the production of 2-hydroxy-octadecatrienoic acid. The peroxygenase has a narrow substrate specificity thus acting as a fatty acid hydroperoxide reductase in vivo.
encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid%2C but not in endosperm and integuments as in carrot. Post-embryonically%2C expression is found in hydathodes%2C stipules%2C root epidermis and emerging root hairs.
A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper%2C but response to copper deficiency is detected only after three weeks of deficiency.
encodes a NAC transcription factor whose expression is induced by drought%2C high salt%2C and abscisic acid. This gene binds to ERD1 promoter in vitro.
Protein of unknown function (DUF3511)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3511 (InterPro:IPR021899)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3511) (TAIR:AT5G11970.1)%3B Has 203 Blast hits to 203 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 203%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Plant protein of unknown function (DUF863)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863%2C plant (InterPro:IPR008581)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G62530.2)%3B Has 160 Blast hits to 145 proteins in 37 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 12%3B Fungi - 14%3B Plants - 101%3B Viruses - 0%3B Other Eukaryotes - 31 (source: NCBI BLink).
CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330)%3B BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G27600.1)%3B Has 1133 Blast hits to 1133 proteins in 252 species: Archae - 47%3B Bacteria - 0%3B Metazoa - 540%3B Fungi - 145%3B Plants - 223%3B Viruses - 0%3B Other Eukaryotes - 178 (source: NCBI BLink).
Encodes a protein homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression down-regulated by cold temperature. It is involved in the desaturation of VLCFAs to make monounsaturated VLCFAs.
Belongs to the dehydrin protein family%2C which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences%2C the K-%2C S-%2C Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.
Encodes zinc finger protein. mRNA levels are upregulated in response to ABA%2C high salt%2C and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor.
encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.
Cytochrome c oxidase%2C subunit III%3B FUNCTIONS IN: cytochrome-c oxidase activity%3B INVOLVED IN: mitochondrial electron transport%2C cytochrome c to oxygen%3B LOCATED IN: membrane%3B CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase%2C subunit III (InterPro:IPR000298)%3B BEST Arabidopsis thaliana protein match is: cytochrome c oxidase subunit 3 (TAIR:ATMG00730.1)%3B Has 29038 Blast hits to 29025 proteins in 5946 species: Archae - 74%3B Bacteria - 4466%3B Metazoa - 19232%3B Fungi - 401%3B Plants - 673%3B Viruses - 0%3B Other Eukaryotes - 4192 (source: NCBI BLink).
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1%2C ATERF-2%2C AND ATERF-5.
Encodes a protein shown to have carboxylesterase activity%2C methyl salicylate esterase activity%2C methyl jasmonate esterase activity%2C and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4%2C or MEGA9 in vitro.
Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets%2C much like ubiquitination%2C leading to post-translational modification of those targets.
Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling and is a positive modulator of natural leaf senescence. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF%2C CSN and 26S proteasome components.
Protein of unknown function%2C DUF584%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF584 (TAIR:AT3G45210.1)%3B Has 318 Blast hits to 318 proteins in 20 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 318%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes a nitrile-specifier protein NSP5. NSP5 is one out of five (At3g16400/NSP1%2C At2g33070/NSP2%2C At3g16390/NSP3%2C At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile%2C but not epithionitrile or thiocyanate formation.
Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). The protein undergoes spontaneous thiolation following treatment with the oxidant tert-butylhydroperoxide. It functions in vitro as a maleylacetoacetate isomerase and is likely to be involved in tyrosine catabolism.
Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment%2C in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.
The gene encoding Arabidopsis thaliana Allantoate Amidohydrolase (AtAAH)which catalyzes the allantoate deiminase reaction (EC 3.5.3.9)is expressed in all parts of the plant being consistent with a function in purine turnover in Arabidopsis.
Octicosapeptide/Phox/Bem1p family protein%3B CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270)%3B BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT3G48240.1)%3B Has 353 Blast hits to 353 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 353%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes APG8%2C a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization is more abundant upon N starvation.
early nodulin-like protein 16 (ENODL16)%3B FUNCTIONS IN: electron carrier activity%2C copper ion binding%3B LOCATED IN: anchored to membrane%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C F mature embryo stage%2C petal differentiation and expansion stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245)%2C Cupredoxin (InterPro:IPR008972)%3B BEST Arabidopsis thaliana protein match is: early nodulin-like protein 17 (TAIR:AT5G15350.1)%3B Has 1364 Blast hits to 1323 proteins in 59 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1364%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Required for expression of CBF-controlled cold-responsive genes. Required for recruitment of the Mediator complex and RNA polymerase II to CBF-controlled cold-responsive genes.
SAUR-like auxin-responsive protein family %3B CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676)%3B BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT4G38860.1)%3B Has 1403 Blast hits to 1386 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1402%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
Encodes an (E%2CE)-alpha-farnesene synthase in the Col ecotype of Arabidopsis. This enzyme can also catalyze the formation of (E)-beta-ocimene as well as trace amounts of myrcene and other related compounds in vitro. The cytosolic localization of the protein may make it favor (E%2CE)-alpha-farnesene biosynthesis because the precursor of this product%2C FPP%2C is primarily cytosolic. Transcript levels for this gene increase in response to treatment with the jasmonic acid mimic coronalon or in response to the insect %3Ci%3EPlutella xylostella%3C/i%3E. TPS03 transcripts can also be detected in flowers. A similar protein from the C24 ecotype with one amino acid change (S267F) has a different substrate specificity.
Encodes a component of the TIC (translocon at the inner envelope membrane of chloroplasts) protein translocation machinery mediating the protein translocation across the inner envelope of plastids. The Arabidopsis genome encodes four Tic20 homologous proteins%2C AT1G04940(Tic20-I)%2C AT2G47840(Tic20-II)%2C AT4G03320(Tic20-IV) and AT5G55710(Tic20-V).
Encodes the kinesin-like protein PAK has an Armadillo motif tail and is involved in guard cell development in Arabidopsis (from Genbank record AF159052).However%2C no defect in stomatal complexes has been observed in loss of function mutations. It accumulates at the preprophase band (PPB) in a cell-cycle and microtubule-dependent manner and is most highly expressed in cells where the placement of the division plane (early embryogenesis%2C stomatal lineages) is critical.
Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze in the presence of NADPH the conversion of %26beta%3B-sitosterol to stigmasterol%2C but not that of 24-%3Ci%3Eepi%3C/i%3E-campesterol to brassicasterol (unlike CYP710A2).
Heavy metal transport/detoxification superfamily protein %3B FUNCTIONS IN: metal ion binding%3B INVOLVED IN: metal ion transport%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121)%2C Heavy-metal-associated%2C conserved site (InterPro:IPR017969)%3B Has 40 Blast hits to 40 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 40%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Polyketide cyclase/dehydrase and lipid transport superfamily protein%3B CONTAINS InterPro DOMAIN/s: Polyketide cyclase/dehydrase (InterPro:IPR019587)%3B BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT2G25770.2)%3B Has 254 Blast hits to 254 proteins in 94 species: Archae - 0%3B Bacteria - 125%3B Metazoa - 0%3B Fungi - 0%3B Plants - 118%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).
Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves.
Encodes eIF5A-2%2C a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950%2C eIF5A-2/At1g26630 and eIF5A-3/At1g69410.
Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves. This gene is upregulated in response to salt stress in wildtype as well as NTHK1 transgenic lines although in the latter case the induction was drastically reduced. It was also upregulated by ABA%2C ACC and NAA treatment%2C although in the latter two cases%2C the induction occurred relatively late when compared with NaCl or ABA treatments. Note: this protein (AtNAC6) on occasion has also been referred to as AtNAC2%2C not to be confused with the AtNAC2 found at locus AT3G15510.
Class III peroxidase Perx34. Expressed in roots%2C leaves and stems. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response.
Encodes a receptor-like kinase protein with a predicted extracellular domain of six leucine-rich repeats and an intracellular serine-threonine kinase domain expressed throughout the developing root. Regulates expression of GLABRA2%2C CAPRICE%2C WEREWOLF%2C and ENHANCER OF GLABRA3. Required for floral organ shape%2C the development of the outer integument of ovules%2C and stem development. Regulates cell shape and cell division planes in the L2 layer of floral meristems and the L1-derived outer integument of ovules. Controls specification of epidermal root hairs. Participates in the coordination of cell morphogenesis between cell layers during floral development.
Along with JAG%2C it is involved in stamen and carpel development. Expression is limited to the adaxial side of lateral organs. Activated by AGAMOUS in a cal-1%2C ap1-1 background.
Protein of unknown function DUF455%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF455 (InterPro:IPR007402)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF455 (TAIR:AT5G04520.1)%3B Has 954 Blast hits to 954 proteins in 412 species: Archae - 0%3B Bacteria - 697%3B Metazoa - 13%3B Fungi - 46%3B Plants - 75%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).
Encodes a subunit of CCAAT-binding complex%2C binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A%2C HAP2B%2C HAP2C)%2C it is expressed in vegetative and reproductive tissues.
likely a subunit of the chloroplast NAD(P)H dehydrogenase complex%2C involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.
Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction.
The gene encodes a SABATH methyltransferase that methylates both salicylic acid and benzoic acid. It is highly expressed in flowers%2C induced by biotic and abiotic stress and thought to be involved in direct defense mechanism.
Fatty acid desaturase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water%3B INVOLVED IN: oxidation reduction%2C lipid metabolic process%3B CONTAINS InterPro DOMAIN/s: Fatty acid desaturase%2C type 1%2C core (InterPro:IPR015876)%2C Fatty acid desaturase%2C type 1 (InterPro:IPR005804)%3B BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06360.1)%3B Has 3426 Blast hits to 3426 proteins in 822 species: Archae - 0%3B Bacteria - 1532%3B Metazoa - 799%3B Fungi - 234%3B Plants - 106%3B Viruses - 4%3B Other Eukaryotes - 751 (source: NCBI BLink).
Protein of unknown function%2C DUF538%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: apoplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF538 (TAIR:AT1G56580.1)%3B Has 409 Blast hits to 409 proteins in 33 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 4%3B Plants - 403%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes an atypical dual-speci%26#64257%3Bcity phosphatase involved in the negative regulation of defense response to a bacterial pathogen%2C P. syringae pv. tomato.
Encodes a putative apoplastic peroxidase Prx37. Primarily expressed in the vascular bundles. Overexpression renders a dwarf phenotype with smaller plants and delayed development. Plants overexpressing Prx37 also shows an increase in the amount of esterified phenolic material associated with their walls.
Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt%2C mannitol%2C and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation.
Encodes a tyrosylprotein sulfotransferase (TPST). This protein is a 500-aa type I transmembrane protein that shows no sequence similarity to animal TPSTs. Activity confirmed by protein expression in yeast. TPST is expressed throughout the plant body%2C and the highest levels of expression are in the root apical meristem. TPST acts in the auxin pathway to maintain postembryonic root stem cell niche by defining the expression of the PLETHORA stem cell transcription factor genes. A loss-of-function mutant TPST displayed a marked dwarf phenotype accompanied by stunted roots%2C pale green leaves%2C reduction in higher order veins%2C early senescence%2C and a reduced number of flowers and siliques.
encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3%2C ATERF-4%2C ATERF-7%2C and leafy petiole.
Copper transport protein family%3B BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G01490.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
Homolog to AT5G22940%2C a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain. It is expressed specifically in developing vessels and fiber cells%2C and FRA8 is targeted to Golgi. Mutants have irregular xylem formation%2C reduced cellulose levels and plants are smaller than normal siblings.
Encodes a protein shown to have carboxylesterase activity%2C methyl IAA esterase activity%2C and methyl jasmonate esterase activity in vitro. This protein does not act on MeSA%2C MeGA4%2C or MEGA9 in vitro. Although MES16 is similar to MES17%2C a MeIAA hydrolase%2C two mes16 mutant lines (SALK_151578) and (SALK_139756) do not show altered sensitivity to MeIAA in root growth assays. MES16 transcripts appear to be more than 10-fold less abundant than those of MES17 in roots.
Encodes allene oxide cyclase%2C one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3%2C AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology%2C 128:876-884.
encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.
Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower%2C leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1%2C At2g38530/LTP2%2C At5g59320/LTP3%2C At5g59310/LTP4%2C At3g51600/LTP5%2C At3g08770/LTP6%2C At2g15050/LTP7%2C At2g18370/LTP8%2C At2g15325/LTP9%2C At5g01870/LTP10%2C At4g33355/LTP11%2C At3g51590/LTP12%2C At5g44265/LTP13%2C At5g62065/LTP14%2C At4g08530/LTP15.
CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764)%2C Protein of unknown function DUF298 (InterPro:IPR005176)%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1)%3B Has 784 Blast hits to 784 proteins in 182 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 480%3B Fungi - 124%3B Plants - 115%3B Viruses - 0%3B Other Eukaryotes - 65 (source: NCBI BLink).
UGT72E1 is an UDPG:coniferyl alcohol glucosyltransferase which specifically glucosylates sinapyl- and coniferyl aldehydes. The enzyme is thought to be involved in lignin metabolism.
HMG-box (high mobility group) DNA-binding family protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: High mobility group%2C superfamily (InterPro:IPR009071)%2C High mobility group%2C HMG1/HMG2 (InterPro:IPR000910)%3B BEST Arabidopsis thaliana protein match is: high-mobility group box 6 (TAIR:AT5G23420.1)%3B Has 632 Blast hits to 609 proteins in 129 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 212%3B Fungi - 44%3B Plants - 246%3B Viruses - 7%3B Other Eukaryotes - 113 (source: NCBI BLink).
GO
domain
Definition
P-value
immune system process
biological_process
"Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats." [GO_REF:0000022, GOC:add, GOC:mtg_15nov05]
4.95e-03
acid phosphatase activity
molecular_function
"Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum." [EC:3.1.3.2]
4.20e-02
glutathione transferase activity
molecular_function
"Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group." [EC:2.5.1.18]
2.25e-02
amino acid transport
biological_process
"The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai]
2.92e-02
response to stress
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation)." [GOC:mah]
3.05e-04
defense response
biological_process
"Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack." [GOC:go_curators]
1.68e-04
immune response
biological_process
"Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat." [GO_REF:0000022, GOC:add, GOC:mtg_15nov05]
2.18e-03
aging
biological_process
"A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death (GO:0016265) and may succeed developmental maturation (GO:0021700)." [GOC:PO_curators]
1.18e-02
chitin binding
molecular_function
"Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues." [GOC:jl, ISBN:0198506732]
1.25e-02
toxin catabolic process
biological_process
"The chemical reactions and pathways resulting in the breakdown of toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism." [GOC:go_curators]
2.18e-03
response to biotic stimulus
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism." [GOC:hb]
3.52e-05
response to wounding
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism." [GOC:go_curators]
4.41e-03
response to fungus
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus." [GOC:hb]
1.06e-06
response to toxic substance
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus." [GOC:lr]
5.91e-03
jasmonic acid biosynthetic process
biological_process
"The chemical reactions and pathways resulting in the formation of jasmonic acid, a fatty acid derivative." [ISBN:0387969845]
3.35e-02
phenylpropanoid metabolic process
biological_process
"The chemical reactions and pathways involving aromatic derivatives of trans-cinnamic acid." [GOC:jl]
4.20e-02
response to abscisic acid
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus." [GOC:jl]
2.74e-02
abscisic acid-activated signaling pathway
biological_process
"A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription." [GOC:signaling, GOC:sm, PMID:24269821]
1.70e-03
lignin metabolic process
biological_process
"The chemical reactions and pathways involving lignins, a class of polymers of phenylpropanoid units." [GOC:lr, GOC:yl]
1.70e-03
lignin biosynthetic process
biological_process
"The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers." [GOC:tair_curators, ISBN:0198547684]
1.54e-02
defense response, incompatible interaction
biological_process
"A response of a plant to a pathogenic agent that prevents the occurrence or spread of disease." [GOC:lr]
7.67e-03
leaf senescence
biological_process
"The process that occurs in a leaf near the end of its active life that is associated with the dismantling of cell components and membranes, loss of functional chloroplasts, and an overall decline in metabolism." [ISBN:0387987819]
1.09e-02
organ senescence
biological_process
"The process that occurs in an organ near the end of its active life that is associated with the dismantling of cell components and membranes, and an overall decline in metabolism. An example of this process is found in Arabidopsis thaliana." [GOC:mtg_sensu, GOC:sm]
5.36e-03
heat acclimation
biological_process
"Any process that increases heat tolerance of an organism in response to high temperatures." [GOC:tair_curators]
8.67e-03
secondary metabolic process
biological_process
"The chemical reactions and pathways resulting in many of the chemical changes of compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. In multicellular organisms secondary metabolism is generally carried out in specific cell types, and may be useful for the organism as a whole. In unicellular organisms, secondary metabolism is often used for the production of antibiotics or for the utilization and acquisition of unusual nutrients." [GOC:go_curators]
1.25e-02
killing of cells of other organism
biological_process
"Any process in an organism that results in the killing of cells of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions." [GOC:add]
5.91e-03
hyperosmotic salinity response
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment." [GOC:jl]
3.78e-02
negative regulation of programmed cell death
biological_process
"Any process that stops, prevents, or reduces the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes." [GOC:jl]
3.78e-02
response to external biotic stimulus
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external biotic stimulus, an external stimulus caused by, or produced by living things." [GOC:go_curators]
1.53e-05
innate immune response
biological_process
"Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens." [GO_REF:0000022, GOC:add, GOC:ebc, GOC:mtg_15nov05, GOC:mtg_sensu]
1.46e-03
recognition of pollen
biological_process
"The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species." [GOC:dph, GOC:pj, GOC:tb]
7.93e-03
NADP binding
molecular_function
"Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH." [GOC:ai]
3.35e-02
defense response to fungus
biological_process
"Reactions triggered in response to the presence of a fungus that act to protect the cell or organism." [GOC:ai]
2.57e-09
response to stimulus
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." [GOC:ai, GOC:bf]
3.64e-02
response to other organism
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism." [GOC:ai]
8.81e-06
oxidation-reduction process
biological_process
"A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons." [GOC:dhl, GOC:ecd, GOC:jh2, GOC:jid, GOC:mlg, GOC:rph]
3.63e-02
defense response to other organism
biological_process
"Reactions triggered in response to the presence of another organism that act to protect the cell or organism from damage caused by that organism." [GOC:dos]
