Protein of unknown function (DUF295)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27580.1)%3B Has 275 Blast hits to 268 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 275%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
SAUR-like auxin-responsive protein family %3B CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676)%3B BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G29430.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
ADP-glucose pyrophosphorylase catalyzes the first%2C rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity%2Csuggesting both have catalytic as well as regulatory functions.
SAUR-like auxin-responsive protein family %3B CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676)%3B BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G29500.1)%3B Has 675 Blast hits to 661 proteins in 20 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 675%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
BEST Arabidopsis thaliana protein match is: DNA binding%3BATP binding (TAIR:AT3G48770.1)%3B Has 66 Blast hits to 55 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 66%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Family of unknown function (DUF572) %3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590)%3B BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT1G25682.1)%3B Has 183 Blast hits to 183 proteins in 74 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 102%3B Fungi - 16%3B Plants - 54%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members%2C two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose%2C presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff %26 Wolf Scheible%2C 2010%2C personal communication).
U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog%2C atU2AF35b%2C contain most of the conserved domains of hsU2AF35%2C including the psiRRM%2C one RS domain%2C two zinc fingers%2C and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83%25 identical%2C and each Arabidopsis homolog shows approximately 70%25 similarity to hsU2AF35. U2AF(35) homologs were also identified from maize%2C rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues%2C with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.
AGP18 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP17 and AGP19%2C other lysine-rich AGPs. It is expressed in young leaves%2C shoots%2C roots and flowers and is active in the regulation of the selection and survival of megaspores.
hydroxyproline-rich glycoprotein family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784%2C Arabidopsis thaliana (InterPro:IPR008502)%3B BEST Arabidopsis thaliana protein match is: ECA1 gametogenesis related family protein (TAIR:AT1G44224.1)%3B Has 1202 Blast hits to 781 proteins in 175 species: Archae - 0%3B Bacteria - 378%3B Metazoa - 371%3B Fungi - 63%3B Plants - 171%3B Viruses - 5%3B Other Eukaryotes - 214 (source: NCBI BLink).
Encodes FERRITIN 3%2C AtFER3. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage%2C but they do not constitute the major iron pool.
Protein of Unknown Function (DUF239)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239%2C plant (InterPro:IPR004314)%3B BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
Encodes BZS1%2C a brassinosteroids-regulated BZR1 target (BRBT) gene. BZS1 is a putative zinc finger transcription factor. Expression of BZS1 was increased under BR-deficient condition and repressed by BR. Transgenic Arabidopsis plants overexpressing BZS1 showed a hypersensitivity to the BR biosynthetic inhibitor brassinazole (BRZ). In contrast%2C transgenic plants expressing reduced level of BZS1 had longer hypocotyls than wild type when grown on BRZ.
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members%2C two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose%2C presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff %26 Wolf Scheible%2C 2010%2C personal communication).
vascular plant one zinc finger protein (VOZ1)%3B BEST Arabidopsis thaliana protein match is: vascular plant one zinc finger protein 2 (TAIR:AT2G42400.1)%3B Has 77 Blast hits to 70 proteins in 13 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 0%3B Plants - 75%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.
5'-AMP-activated protein kinase-related%3B BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase-related (TAIR:AT5G03420.1)%3B Has 814 Blast hits to 789 proteins in 227 species: Archae - 3%3B Bacteria - 97%3B Metazoa - 231%3B Fungi - 191%3B Plants - 199%3B Viruses - 0%3B Other Eukaryotes - 93 (source: NCBI BLink).
Encodes an ortholog of yeast NTF2%2C a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP%2C an essential player in nucleocytoplasmic transport.
Encodes a secreted glycosylated serine carboxypeptidase with broad substrate preference that is involved in brassinosteroid signalling via BRI1. It is proteolytically processed in vivo by a separate as yet unidentified protease.
Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.
Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane%2C its mRNA expression induced by high levels of Al and by osmotic stress. The promoter contains an L-proline-inducible element.
Protein of unknown function%2C DUF617%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617%2C plant (InterPro:IPR006460)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF617 (TAIR:AT4G39610.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
Protein of unknown function (DUF1664)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT2G02730.2)%3B Has 199 Blast hits to 190 proteins in 29 species: Archae - 0%3B Bacteria - 14%3B Metazoa - 2%3B Fungi - 2%3B Plants - 161%3B Viruses - 0%3B Other Eukaryotes - 20 (source: NCBI BLink).
Encodes FERRITIN 4%2C AtFER4. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage%2C but they do not constitute the major iron pool. Localize to mitochondria. Knock out mutants are not sensitive to abiotic stress.
PLAC8 family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: male gametophyte%2C cultured cell%3B EXPRESSED DURING: M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461)%2C Protein of unknown function DUF2985 (InterPro:IPR021369)%3B BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G05350.1)%3B Has 166 Blast hits to 162 proteins in 25 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 10%3B Plants - 150%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).
Encodes a GPI-anchored arabinogalactan (AG) peptide with a short 'classical' backbone of 10 amino acids%2C seven of which are conserved among the 4 other Arabidopsis AG peptides. These peptides may be involved in cell signaling.
specifically interacts with FUS6/COP11 via the C-terminal domain of FUS6/COP11 and associates with an ATPase subunit of the 19S proteasome regulatory complex%2C AtS6A.
Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.
Cullin%2C putative%2C similar to Cullin homolog 3 (CUL-3) SP:Q13618%2C GI:3639052 from (Homo sapiens)%3B contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal.
Transcriptional activator that binds to the DRE/CRT regulatory element and induces COR (cold-regulated) gene expression increasing plant freezing tolerance. It encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF1). The protein contains one AP2 domain. There are six members in this subfamily%2C including CBF1%2C CBF2%2C and CBF3. This gene is involved in response to low temperature and abscisic acid.
Protein of unknown function (DUF579)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C LP.10 ten leaves visible%2C 4 leaf senescence stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148)%2C Conserved hypothetical protein CHP01627 (InterPro:IPR006514)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT1G27930.1)%3B Has 252 Blast hits to 251 proteins in 20 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 0%3B Fungi - 0%3B Plants - 240%3B Viruses - 0%3B Other Eukaryotes - 7 (source: NCBI BLink).
Encodes a transporter that transports purines%2Ccytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation.
Encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Encodes a member of the PYR (pyrabactin resistance )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members. PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2.
Belongs to a large family of plant-specific genes of unknown function. Involved in resistance to the powdery mildew species Erysiphe cichoracearum and Erysiphe orontii%2C but not to the unrelated pathogens Pseudomonas syringae or Peronospora parasitica. A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members%2C two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose%2C presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff %26 Wolf Scheible%2C 2010%2C personal communication).
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT1G27570.1); Has 109 Blast hits to 109 proteins in 38 specie /.../hae - 0; Bacteria - 0; Metazoa - 65; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). [Source:TAIR;Acc:AT1G27590]
Encodes an allantoinase which is involved in allantoin degradation and assimilation. Gene expression was induced when allantoin was added to the medium. The insertion mutant%2C ataln m2-1%2C did not grow well on the MS medium where allantoin%2C instead of ammonium nitrate%2C was supplied.
F-box/RNI-like/FBD-like domains-containing protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C FBD (InterPro:IPR013596)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C FBD-like (InterPro:IPR006566)%3B BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G78750.1)%3B Has 1457 Blast hits to 1436 proteins in 34 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 27%3B Fungi - 0%3B Plants - 1429%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
GO
domain
Definition
P-value
trans-Golgi network
cellular_component
"The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination." [GOC:vw, ISBN:0815316194]
2.92e-02
iron ion transport
biological_process
"The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai]
3.91e-02
lipid catabolic process
biological_process
"The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent." [GOC:go_curators]
7.38e-03
hydrolase activity, acting on ester bonds
molecular_function
"Catalysis of the hydrolysis of any ester bond." [GOC:jl]
1.41e-02
anchored component of membrane
cellular_component
"The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping." [GOC:dos, GOC:mah]
7.38e-03
anchored component of plasma membrane
cellular_component
"The component of the plasma membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping." [GOC:dos, GOC:mah]
