Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1%2C but not under EIN3.
Protein of unknown function (DUF626)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626%2C Arabidopsis thaliana (InterPro:IPR006462)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G28500.1)%3B Has 219 Blast hits to 218 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 219%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
RARE-COLD-INDUCIBLE 2B (RCI2B)%3B CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612)%3B BEST Arabidopsis thaliana protein match is: Low temperature and salt responsive protein family (TAIR:AT3G05880.1)%3B Has 1391 Blast hits to 1391 proteins in 471 species: Archae - 0%3B Bacteria - 653%3B Metazoa - 37%3B Fungi - 280%3B Plants - 382%3B Viruses - 0%3B Other Eukaryotes - 39 (source: NCBI BLink).
Similar to TSK-associating protein 1 (TSA1)%2C contains 10 EFE repeats%2C a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.
Belongs to the dehydrin protein family%2C which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences%2C the K-%2C S-%2C Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.
Pollen Ole e 1 allergen and extensin family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to oxidative stress%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041)%3B BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT3G16660.1)%3B Has 73 Blast hits to 73 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 72%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
encodes an isoform of 4-coumarate:CoA ligase (4CL)%2C which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid%2C caffeic acid%2C ferulic acid%2C 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate.
LAG1 homolog . Loss of function mutant is sensitive to AAL-toxin. LOH2 is presumed to function in sphingolipid metabolism. It encodes a ceramide synthase essential for production of LCFA-ceramides (mainly C26).
flavin mononucleotide flavoprotein involved in salt and osmotic tolerance HAL3A encodes for phosphopantothenoylcysteine decarboxylase being involved in Coenzyme A biosynthesis. HAL3A is predominant over another gene with the presumably same function (HAL3B).
cold and ABA inducible protein kin1%2C possibly functions as an anti-freeze protein. Transcript level of this gene is induced by cold%2C ABA%2C dehydration and osmoticum (mannitol). However%2C protein activity of GUS fused to the promoter of this gene is inhibited by cold treatment%2C suggesting an inhibition of the protein by increased transcript level.
A cold-regulated gene whose product is targeted to the chloroplast. Cor15am protects stromal proteins from aggregation under various stress conditions. Constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. Late Embryogenesis abundant protein (LEA). Protects chloroplast membranes during freezing.
A semidominant QTL which has an epistatic effect on the Epithiospecifier gene. Represses nitrile formation and favors isothiocyanate production during glucosinolate hydrolysis. The functional allele deters the insect herbivory T. ni.
A member of the FAF family proteins encoded by the FANTASTIC FOUR (FAF) genes: AT4G02810 (FAF1)%2C AT1G03170 (FAF2)%2C AT5G19260 (FAF3) and AT3G06020 (FAF4). FAFs have the potential to regulate shoot meristem size in Arabidopsis thaliana. FAFs can repress WUS%2C which ultimately leads to an arrest of meristem activity in FAF overexpressing lines.
Encodes a the C-terminal domain of poly(A) binding proteins. MPC is imprinted such that only the maternal allele is expressed in the endosperm. MPC is silenced by the action of MET1 and its expression is promoted by DEM.
Encodes a low affinity nitrate transporter that is expressed in the plasma membrane and found in the phloem of the major veins of leaves. It is responsible for nitrate redistribution to young leaves.
Encodes an enzyme that can act as a aldolase or an epimerase for 7%2C8-dihydroneopterin and 7%2C8-dihydromonapterin in vitro. It is likely to act in tetrahydrofolate biosynthesis in vivo.
Heavy metal transport/detoxification superfamily protein %3B FUNCTIONS IN: metal ion binding%3B INVOLVED IN: defense response to fungus%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121)%3B BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT4G16380.1)%3B Has 2168 Blast hits to 1467 proteins in 288 species: Archae - 0%3B Bacteria - 595%3B Metazoa - 230%3B Fungi - 126%3B Plants - 741%3B Viruses - 142%3B Other Eukaryotes - 334 (source: NCBI BLink).
encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus. Localization of the gene product is similar to that of NHL3 (plasma membrane) but it is yet inconclusive.
ROP binding protein kinases 2 (RBK2)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: nucleus%2C cytoplasm%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G18910.1)%3B Has 106611 Blast hits to 105596 proteins in 3392 species: Archae - 84%3B Bacteria - 12146%3B Metazoa - 38869%3B Fungi - 8564%3B Plants - 31291%3B Viruses - 415%3B Other Eukaryotes - 15242 (source: NCBI BLink).
Functions as phosphatidylcholine:diacylglycerol cholinephosphotransferase%2C a major reaction for the transfer of 18:1 into phosphatidylcholine for desaturation and also for the reverse transfer of 18:2 and 18:3 into the triacylglycerols synthesis pathway
Encodes a member of the Alfin1-like family of nuclear-localized PHD (plant homeodomain) domain containing proteins. All AL proteins except AL3 bind to di- or trimethylated histone H3 (H3K4me3/2). Members of this family include: AT5G05610 (AL1)%2C AT3G11200 (AL2)%2C AT3G42790 (AL3)%2C AT5G26210 (AL4)%2C AT5G20510 (AL5)%2C AT2G02470 (AL6)%2C AT1G14510 (AL7).
Encodes protein similar to yeast COX17%2C a copper-binding protein that mediates the delivery of Cu to the mitochondria for the assembly of a functional cytochrome oxidase complex.
Protein of unknown function%2C DUF599%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF599 (TAIR:AT5G24600.2)%3B Has 303 Blast hits to 303 proteins in 73 species: Archae - 0%3B Bacteria - 107%3B Metazoa - 0%3B Fungi - 0%3B Plants - 182%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).
Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication.
Low temperature and salt responsive protein family%3B INVOLVED IN: response to salt stress%2C response to cold%2C hyperosmotic salinity response%2C defense response to fungus%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612)%3B BEST Arabidopsis thaliana protein match is: Low temperature and salt responsive protein family (TAIR:AT4G30660.2)%3B Has 1315 Blast hits to 1315 proteins in 423 species: Archae - 0%3B Bacteria - 542%3B Metazoa - 42%3B Fungi - 322%3B Plants - 377%3B Viruses - 0%3B Other Eukaryotes - 32 (source: NCBI BLink).
Domain of unknown function (DUF23)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166)%3B BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G48190.1)%3B Has 98 Blast hits to 98 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 98%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Heavy metal transport/detoxification superfamily protein %3B FUNCTIONS IN: metal ion binding%3B INVOLVED IN: metal ion transport%3B LOCATED IN: cell wall%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121)%3B BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G19090.1)%3B Has 122077 Blast hits to 41053 proteins in 2213 species: Archae - 188%3B Bacteria - 33817%3B Metazoa - 49902%3B Fungi - 6812%3B Plants - 10774%3B Viruses - 1540%3B Other Eukaryotes - 19044 (source: NCBI BLink).
Protein of unknown function (DUF506) %3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506%2C plant (InterPro:IPR006502)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT3G25240.1)%3B Has 393 Blast hits to 390 proteins in 24 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 391%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).
Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress%2C salt stress%2C ABA treatment or dehydration.
Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family%2C which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences%2C the K-%2C S-%2C Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.
Homologous to a eukaryote specific ABA- and stress-inducible gene first isolated from barley. Groups in one subfamily with ATHVA22E. Along with other members of the ATHVA22 family%2C it may be involved in regulation of autophagy during development.
Encodes a unique protein that is both a member of the RIP (RNA-editing interacting protein) family and the RNA recognition motif (RRM)-containing family. It controls the editing extent of 62%25 of the plastid Cs targeted for editing in Arabidopsis.
Protein of unknown function (DUF3411)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3411) (TAIR:AT3G08630.1)%3B Has 11715 Blast hits to 4977 proteins in 490 species: Archae - 4%3B Bacteria - 2620%3B Metazoa - 4563%3B Fungi - 550%3B Plants - 2459%3B Viruses - 100%3B Other Eukaryotes - 1419 (source: NCBI BLink).
Integral membrane protein in the inner envelope of chloroplasts. Provide freezing tolerance. Expression is induced by short-term cold-treatment%2C water deprivation%2C and abscisic acid treatment.
Polyketide cyclase/dehydrase and lipid transport superfamily protein%3B CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913)%3B BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G55960.1)%3B Has 332 Blast hits to 332 proteins in 66 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 145%3B Fungi - 0%3B Plants - 157%3B Viruses - 0%3B Other Eukaryotes - 30 (source: NCBI BLink).
Encodes a nitrile-specifier protein NSP3. NSP3 is one out of five (At3g16400/NSP1%2C At2g33070/NSP2%2C At3g16390/NSP3%2C At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile%2C but not epithionitrile or thiocyanate formation.
Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.
Protein of unknown function DUF2359%2C transmembrane%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2359%2C transmembrane (InterPro:IPR019308)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF2359%2C transmembrane (TAIR:AT1G70770.2)%3B Has 155 Blast hits to 134 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 47%3B Fungi - 0%3B Plants - 108%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
encodes a putative apoplastic lipid transfer protein that is involved in systemic acquired resistance. Mutants in this gene exhibit wild-type local resistance to avirulent and virulent Pseudomonas syringae%2C but pathogenesis-related gene expression is abolished in uninoculated distant leaves and fail to develop SAR to virulent Pseudomonas or Peronospora parasitica.
TRAF-like family protein%3B CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974)%2C MATH (InterPro:IPR002083)%3B BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT3G20370.1)%3B Has 1739 Blast hits to 1291 proteins in 145 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 259%3B Fungi - 101%3B Plants - 1336%3B Viruses - 0%3B Other Eukaryotes - 43 (source: NCBI BLink).
encodes an alpha form of a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment%2C water deprivation%2C and abscisic acid treatment.
Encodes a protein homologous to translationally controlled tumor protein (TCTP) from Drosophila. In flies%2C TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs%2C generated through RNAi%2C are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well.
Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines%2C xylem formation is reduced.
Encodes NIP7%3B1%2C an anther-specific boric acid transporter of the aquaporin superfamily regulated by an unusual tyrosine in helix 2 of the transport pore.
Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 51 of glycoside hydrolases. It may be involved in cell wall modification.
Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus and spermine. Overexpression of the gene induces the expression of PR-1 gene and shows light-dependent 'speck disease-like' symptom on leaves. The gene product is localized to the chloroplast
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881)%3B BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT3G04710.3)%3B Has 200 Blast hits to 200 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 200%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
GolS1 is a galactinol synthase that catalyzes the formation of galactinol from UDP-galactose and myo-inositol. GolS1 transcript levels rise in response to methyl viologen%2C an oxidative damage-inducing agent. Plants over-expressing GolS1 have increased tolerance to salt%2C chilling%2C and high-light stress.
Protein of unknown function (DUF581)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT1G78020.1)%3B Has 511 Blast hits to 511 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 511%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166)%3B BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G27330.1)%3B Has 321 Blast hits to 319 proteins in 87 species: Archae - 0%3B Bacteria - 165%3B Metazoa - 2%3B Fungi - 4%3B Plants - 113%3B Viruses - 0%3B Other Eukaryotes - 37 (source: NCBI BLink).
SNARE associated Golgi protein family%3B CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414)%3B BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G22850.1)%3B Has 1565 Blast hits to 1562 proteins in 407 species: Archae - 8%3B Bacteria - 720%3B Metazoa - 121%3B Fungi - 35%3B Plants - 266%3B Viruses - 0%3B Other Eukaryotes - 415 (source: NCBI BLink).
Family of unknown function (DUF577)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598)%3B BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF577) (TAIR:AT1G66060.1)%3B Has 82 Blast hits to 52 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 82%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
This gene encodes a plasma membrane-localized polyol/cyclitol/monosaccharide-H+-symporter. The symporter is able to catalyze the energy-dependent membrane passage of a wide range of linear polyols (three to six carbon backbone)%2C of cyclic polyols (%3Ci%3Emyo%3C/i%3E-inositol)%2C and of numerous monosaccharides%2C including pyranose ring-forming and furanose ring-forming hexoses and pentoses. This gene belongs to a monosaccharide transporter-like (MST-like) superfamily.
Belongs to the dehydrin protein family%2C which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences%2C the K-%2C S-%2C Y- and lysine rich segments. Cold regulated gene%2C amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress%2C ABA%2C dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant.
Arabidopsis NSN1 encodes a nucleolar GTP- binding protein and is required for maintenance of inflorescence meristem identity and floral organ development.
Protein of unknown function (DUF567)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF567) (TAIR:AT1G80120.1)%3B Has 436 Blast hits to 435 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 7%3B Plants - 429%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes a tubulin-binding cofactor. Homozygous mutant plants are embryo lethal. Heterozygous mutant plants showed increased ploidy and higher numbers of spindles and phragmoplasts%2C suggesting a role in cell division.
Encodes BE1%2C a putative glycoside hydrolase. Involved in organogenesis and somatic embryogenesis by regulating carbohydrate metabolism. Mutation in BE1 has pleotrophic effect on the whole plant development.
Protein of unknown function (DUF1005)%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1005 (InterPro:IPR010410)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1005) (TAIR:AT1G50040.1)%3B Has 782 Blast hits to 189 proteins in 38 species: Archae - 0%3B Bacteria - 22%3B Metazoa - 12%3B Fungi - 23%3B Plants - 137%3B Viruses - 0%3B Other Eukaryotes - 588 (source: NCBI BLink).
Encodes PAP15%2C a purple acid phosphatase with phytase activity. Expression of PAP15 is developmentally and temporally regulated%2C with strong expression at the early stages of seedling growth and pollen germination. The expression is also organ/tissue-specific%2C with strongest expression in the vasculature%2C pollen grains%2C and roots. Recombinant PAP protein exhibits broad substrate specificity with moderate phytase activity. PAP15 likely mobilizes phosphorus reserves in plants%2C particularly during seed and pollen germination.
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
Member of the R2R3-MYB gene family. Similar to GA-induced Barley myb gene. May be induced during germination in response to GA. Double mutants with MYB33 are male sterile%2C showing defects in pollen development and anther development. Contains a binding site for miRNA159 and may be spatially regulated by this micro RNA. The male sterile phenotype of the MYB33/MYB65 double mutant is light and temperature sensitive. Fertility can be restored with increased light intensity and lower temperatures.
Protein kinase superfamily protein%3B FUNCTIONS IN: protein tyrosine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C active site (InterPro:IPR008266)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G52540.1)%3B Has 95455 Blast hits to 94286 proteins in 3823 species: Archae - 68%3B Bacteria - 10579%3B Metazoa - 35533%3B Fungi - 6381%3B Plants - 30035%3B Viruses - 237%3B Other Eukaryotes - 12622 (source: NCBI BLink).
SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis%3B all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion.
Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family%2C more closely related to NFU5 than to NFU1%2C2%2C and 3. Targeted to the mitochondrion.
Encodes a protein with UDP-glucosyl transferase activity that was shown to preferentially glucosylates abscisic acid (ABA)%2C and not its catabolites. Moreover%2C UGT71B6 was shown to have a strict preference for the naturally-occurring ABA enantiomer%2C (+)-ABA%2C and not its 'unnatural' relative%2C (-)-ABA. This is in contrast to the other identified UGT genes catalyzing the glucosylation of ABA which were shown to accept both stereoisomers as substrates.
Encodes PRA1.B6%2C an isoform of the PRA1 (Prenylated Rab acceptors) family. PRAs bind to prenylated Rab proteins and possibly aids in targeting Rabs to their respective compartments. PRA1.B6 localizes to the Golgi apparatus and its ER-to-Golgi trafficking and localization to the Golgi apparatus are regulated by multiple sequence motifs in both the C- and N-terminal cytoplasmic domains.
Encodes a putative pectin methylesterase/invertase inhibitor. Anti-sense reduction of this gene's transcript results in pollen tube growth retardation and then partial male sterility and reduced seed set.
Encodes a member of the phosphate starvation-induced glycerol-3-phosphate permease gene family: AT3G47420(G3Pp1)%2C AT4G25220(G3Pp2)%2C AT1G30560(G3Pp3)%2C AT4G17550(G3Pp4) and AT2G13100(G3Pp5).
Plasma-membrane choline transporter family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603)%3B BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT3G04440.1)%3B Has 327 Blast hits to 327 proteins in 106 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 4%3B Fungi - 118%3B Plants - 134%3B Viruses - 0%3B Other Eukaryotes - 69 (source: NCBI BLink).
Leucine-rich receptor-like protein kinase family protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway%2C protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 13 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT3G24240.1)%3B Has 229810 Blast hits to 121355 proteins in 3638 species: Archae - 147%3B Bacteria - 18757%3B Metazoa - 70622%3B Fungi - 9447%3B Plants - 104379%3B Viruses - 381%3B Other Eukaryotes - 26077 (source: NCBI BLink).
putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al%2C 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Encodes RPT5a (Regulatory Particle 5a)%2C one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis%2C the RPT5 subunit is encoded by two highly homologous genes%2C RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50%25 pollen lethality%2C indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession%2C a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte%2C whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.
Ribosomal protein L30/L7 family protein%3B FUNCTIONS IN: structural constituent of ribosome%2C transcription regulator activity%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic ribosome%2C cytosolic large ribosomal subunit%2C chloroplast%2C large ribosomal subunit%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L30%2C N-terminal (InterPro:IPR012988)%2C Ribosomal protein L7%2C eukaryotic (InterPro:IPR005998)%2C Ribosomal protein L30p/L7e%2C conserved region (InterPro:IPR000517)%2C Ribosomal protein L30%2C conserved site (InterPro:IPR018038)%2C Ribosomal protein L30%2C ferredoxin-like fold domain (InterPro:IPR016082)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT2G01250.1)%3B Has 1325 Blast hits to 1323 proteins in 391 species: Archae - 211%3B Bacteria - 1%3B Metazoa - 476%3B Fungi - 215%3B Plants - 195%3B Viruses - 0%3B Other Eukaryotes - 227 (source: NCBI BLink).
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.
Encodes RCAR1 (regulatory components of ABA receptor). Interacts with and regulates the type 2C protein phosphatases (PP2Cs) ABI1 and ABI2. Functions as abscisic acid sensor.
RING finger protein involved in peroxisome biogenesis. Also involved in peroxisomal import of nitric oxide synthase. Has been demonstrated to have E3 ubiquitin ligase activity.
Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use caffeyl%2C coniferyl and d-hydroxyconiferyl aldehydes as substrates.
Plant protein of unknown function (DUF869)%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869%2C plant (InterPro:IPR008587)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT2G23360.1)%3B Has 44099 Blast hits to 25548 proteins in 1425 species: Archae - 637%3B Bacteria - 4297%3B Metazoa - 22352%3B Fungi - 3568%3B Plants - 2188%3B Viruses - 105%3B Other Eukaryotes - 10952 (source: NCBI BLink).
Encodes a putative aldehyde dehydrogenase. The gene is not responsive to osmotic stress and is expressed constitutively at a low level in plantlets and root cultures.
Encodes a protein with pyridoxal phosphate synthase activity whose transcripts were detected mostly in roots and accumulate during senescence. The protein was found in very low abundance%2C which prevented a specific localisation.
JAZs are direct targets of the SCFCOI1 E3 ubiquitin-ligase and JA treatment induces their proteasome-mediated degradation. Furthermore%2C JAI3 negatively regulates the key transcriptional activator of JA responses%2C AtMYC2. The C-terminal portion of JAZ3%2C including the Jas domain%2C appears to be important for JAZ3-COI1 binding in the presence of coronatine.
Major facilitator superfamily protein%3B CONTAINS InterPro DOMAIN/s: Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%2C Biopterin transport-related protein BT1 (InterPro:IPR004324)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G04570.1)%3B Has 1088 Blast hits to 1079 proteins in 365 species: Archae - 17%3B Bacteria - 560%3B Metazoa - 42%3B Fungi - 5%3B Plants - 247%3B Viruses - 0%3B Other Eukaryotes - 217 (source: NCBI BLink).
Uncharacterised protein family (UPF0497)%3B CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497%2C trans-membrane plant (InterPro:IPR006702)%2C Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (InterPro:IPR006459)%3B BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT4G16442.1)%3B Has 688 Blast hits to 688 proteins in 22 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 688%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes an arginyl-tRNA:protein arginyltransferase (ATE2)%2C a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1%2C At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening%2C seedling sugar sensitivity%2C seedling lipid breakdown%2C and abscisic acid (ABA) sensitivity of germination.
encodes a 42 kDa FK506-binding protein (AtFKBP42) that possesses similarity to multidomain peptidyl-prolyl cis/trans isomerases (PPIases%2C EC 5.2.1.8)%2C which are known to be components of mammalian steroid hormone receptor complexes. The protein appears to be localized to the plasma membrane by electron microscopy and binds to HSP90.1 and calmodulin in vitro. It also aggregates citrate synthase in vitro but does NOT show PPIase activity in vivo. Mutants are reduced in size and exhibit disoriented growth in all organs. Belongs to one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010%2C Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.
Responsible for the final assembly of galactolipids in photosynthetic membranes. Provides stability to the PS I core complex (e.g. subunits PsaD%2C PsaE).
Encodes LGO (loss of giant cells from organs) required for endoreduplication in sepal giant cell formation. Giant cells in both leaves and sepals are absent in lgo mutants. LGO is a member of a plant specific cell cycle inhibitor family SIAMESE and was originally named as SMR1(SIAMESE RELATED 1).
encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily%2C including CBF1%2C CBF2%2C and CBF3. This gene is involved in response to low temperature and abscisic acid.
Encodes a subunit of chloroplasts chaperonins that are involved in mediating the folding of newly synthesized%2C translocated%2C or stress-denatured proteins. Cpn60 subunits are: Cpn60alpha1 (At2g28000)%2C AtCpn60alpha2 (At5g18820)%2C AtCpn60beta1 (At1g55490)%2C AtCpn60beta2 (At3g13470)%2C AtCpn60beta3 (At5g56500)%2C AtCpn60beta4 (At1g26230).
Induced by low temperatures%2C dehydration and salt stress and ABA. Encodes a small (54 amino acids)%2C highly hydrophobic protein that bears two potential transmembrane domains.
Encodes a anthocyanin 3-O-glucoside: 2-O-xylosyl-transferase involved in anthocyanin modification that converts cyanidin 3-O-glucoside to cyanidin 3-O-xylosyl(1-%3E2)glucoside. Its preferred sugar donor is UDP-xylose.
Member of a small gene family which have a KLEEK domain which may be involved in protein- protein interactions. Over expression of WDL1 results in abnormal root development.
PPPDE putative thiol peptidase family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862%2C eukaryotic (InterPro:IPR008580)%3B BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT5G25170.1)%3B Has 872 Blast hits to 872 proteins in 189 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 235%3B Fungi - 119%3B Plants - 332%3B Viruses - 0%3B Other Eukaryotes - 186 (source: NCBI BLink).
PAS domain-containing protein tyrosine kinase family protein%3B FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity%2C kinase activity%3B INVOLVED IN: signal transduction%2C protein amino acid phosphorylation%2C regulation of transcription%2C DNA-dependent%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C PAS fold (InterPro:IPR013767)%2C PAS (InterPro:IPR000014)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: PAS domain-containing protein tyrosine kinase family protein (TAIR:AT5G49470.3)%3B Has 125703 Blast hits to 124182 proteins in 4625 species: Archae - 237%3B Bacteria - 14697%3B Metazoa - 46775%3B Fungi - 11283%3B Plants - 33084%3B Viruses - 499%3B Other Eukaryotes - 19128 (source: NCBI BLink).
Encodes AHP4%2C a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1)%2C AT3G29350 (AHP2)%2C AT5G39340 (AHP3)%2C AT3G16360 (AHP4)%2C AT1G03430 (AHP5) and AT1G80100 (AHP6).
ZIP metal ion transporter family%3B FUNCTIONS IN: metal ion transmembrane transporter activity%3B INVOLVED IN: metal ion transport%2C transmembrane transport%3B LOCATED IN: endomembrane system%2C membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689)%3B BEST Arabidopsis thaliana protein match is: ZIP metal ion transporter family (TAIR:AT3G08650.2)%3B Has 3662 Blast hits to 3630 proteins in 1201 species: Archae - 124%3B Bacteria - 2163%3B Metazoa - 678%3B Fungi - 116%3B Plants - 147%3B Viruses - 0%3B Other Eukaryotes - 434 (source: NCBI BLink).
Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A%2C and poor activity towards the chloroplast NADP-malate dehydrogenase.
A member of a large family of seven-transmembrane domain proteins specific to plants%2C homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins%2C with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV%2C with AtMLO2%2C AtMLO3 and AtMLO12. The gene is expressed during early seedling growth%2C in root tips and cotyledon vascular system%2C in floral organs (anthers and stigma)%2C and in fruit abscission zone%2C as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli%2C suggesting functional redundancy%2C co-function%2C or antagonistic function(s).
Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt%2Cosmotic%2C cold stress).
isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.
Encodes a light-inducible%2C nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1%2C co-localizes to the nuclear specks and is ubiquinated by COP1.
Protein of unknown function (DUF1191)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: inflorescence meristem%2C leaf whorl%2C root%2C flower%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1191 (InterPro:IPR010605)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1191) (TAIR:AT4G23720.1)%3B Has 115 Blast hits to 115 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 113%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).
Protein of unknown function (DUF803)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF803) (TAIR:AT4G13800.1)%3B Has 1388 Blast hits to 1369 proteins in 245 species: Archae - 2%3B Bacteria - 146%3B Metazoa - 422%3B Fungi - 370%3B Plants - 270%3B Viruses - 0%3B Other Eukaryotes - 178 (source: NCBI BLink).
Encodes a protein predicted to have dihydropyrimidine dehydrogenase activity. Its activity has not been demonstrated in vivo%2C but%2C it is required for efficient uracil catabolism in Arabidopsis. It localizes to the plastid.
Encodes a protein with sequence similarity to calmodulins. Loss of function mutations have decreased response to chitin elicitors suggesting a role in plant response to fungal pathogens.
Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identi%26#64257%3Bed in the Arabidopsis genome: ADT1 [At1g11790]%3B ADT2 [At3g07630]%3B ADT3 [At2g27820]%3B ADT4 [At3g44720]%3B ADT5 [At5g22630]%3B and ADT6 [At1g08250].
Encodes a shikimate kinase. Its transcripts appear to be expressed most highly in mature embryos and senescing leaves%2C and its transcript levels rise during heat stress and recovery. It is believed to be localized to the chloroplast.
Encodes a GPI-anchored arabinogalactan (AG) peptide with a short 'classical' backbone of 10 amino acids%2C seven of which are conserved among the 4 other Arabidopsis AG peptides. These peptides may be involved in cell signaling.
Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the biogenesis of Photosystem I and II. ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II.
Pectinacetylesterase family protein%3B CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963)%3B BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT3G09405.1)%3B Has 557 Blast hits to 548 proteins in 93 species: Archae - 0%3B Bacteria - 46%3B Metazoa - 119%3B Fungi - 0%3B Plants - 303%3B Viruses - 0%3B Other Eukaryotes - 89 (source: NCBI BLink).
Reticulon family protein%3B CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388)%3B BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT3G61560.1)%3B Has 1060 Blast hits to 1060 proteins in 78 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 591%3B Fungi - 0%3B Plants - 458%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).
Protein phosphatase 2C family protein%3B FUNCTIONS IN: protein serine/threonine phosphatase activity%2C catalytic activity%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932)%2C Protein phosphatase 2C%2C N-terminal (InterPro:IPR014045)%2C Protein phosphatase 2C (InterPro:IPR015655)%3B BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G36250.1)%3B Has 5636 Blast hits to 5616 proteins in 298 species: Archae - 2%3B Bacteria - 16%3B Metazoa - 1389%3B Fungi - 636%3B Plants - 2421%3B Viruses - 5%3B Other Eukaryotes - 1167 (source: NCBI BLink).
Protein of unknown function (DUF581)%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT1G22160.1)%3B Has 525 Blast hits to 525 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 525%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.
Encodes a zinc finger protein containing only a single zinc finger that acts downstream of ZFP6 in regulating trichome development by integrating GA and cytokinin signaling.
Identified as drought-inducible gene by differential hybridization. Upregulated by high light%2C drought%2C cold and salt stress determined by microarray analysis.
Encodes a guard cell outward potassium channel. Belongs to the Shaker family K+ channel. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650)%2C AKT5 (AT4G32500) and SPIK (also known as AKT6%2C AT2G25600)%3B II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290)%3B III (weakly inward rectifying channel): AKT2 (AT4G22200)%3B IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1%2C AT4G32650)%3B V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500). Mutants have increased water consumption and limited stomatal closure in response to abscisic and jasmonic acids. It forms a heteromeric K(out) channels with SKOR. The gene is expressed ubiquitously in root and the vasculature and guard cells of leaves. Expression is suppressed during agrobacterium-induced tumor formation and increased in response to water deprivation and cold.
TPX2 (targeting protein for Xklp2) protein family%3B CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675)%3B BEST Arabidopsis thaliana protein match is: WVD2-like 1 (TAIR:AT3G04630.3)%3B Has 678 Blast hits to 638 proteins in 104 species: Archae - 2%3B Bacteria - 22%3B Metazoa - 209%3B Fungi - 27%3B Plants - 299%3B Viruses - 0%3B Other Eukaryotes - 119 (source: NCBI BLink).
Encodes a member of the WNK family (9 members in all) of protein kinases%2C the structural design of which is clearly distinct from those of other known protein kinases%2C such as receptor-like kinases and mitogen-activated protein kinases.
Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes.
Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Also involved in cytokinin-dependent inhibition of hypocotyl elongation and cytokinin-dependent greening and shooting in tissue culture.
Contains dual transcription units and alternative splicing that could rescue the sterility defect of glc mutants. Shares homology to BAHD (for BEAT%2C AHCT%2C HCBT%2C and DAT) acyl-transferases. Functions in double fertilization.
Encodes a glucuronoxylan(GX)-speci%26#64257%3Bc 4-O-methyltransferase responsible for methylating GlcA residues in GX. Reduced methylation of GX ingxmt1-1 plants is correlated with altered lignin composition.
Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Activation depends totally on CCS. Overexpression of a miR398-resistant form of CSD2 leads to more dramatic improvements in stress (hight light%2C Cu2+ and methyl viologen) tolerance than overexpression of wild-type CSD2.
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
Pectinacetylesterase family protein%3B CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963)%3B BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT5G26670.1)%3B Has 541 Blast hits to 533 proteins in 91 species: Archae - 0%3B Bacteria - 38%3B Metazoa - 118%3B Fungi - 0%3B Plants - 298%3B Viruses - 0%3B Other Eukaryotes - 87 (source: NCBI BLink).
belongs to the flavin-monooxygenase (FMO) family%2C encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members%2C two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose%2C presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff %26 Wolf Scheible%2C 2010%2C personal communication).
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10.
Protein of unknown function (DUF626)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626%2C Arabidopsis thaliana (InterPro:IPR006462)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G23970.2)%3B Has 156 Blast hits to 155 proteins in 3 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 154%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
S2P-like putative metalloprotease%2C also contain transmembrane helices near their C-termini and many of them%2C five of seven%2C contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs%2C the previously reported NPDG motif (aa 442%E2%80%93454 in EGY1%2C Rudner et al.%2C 1999) and a newly defined GNLR motif (aa 171%E2%80%93179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.
Protein of Unknown Function (DUF239)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239%2C plant (InterPro:IPR004314)%3B BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G55360.1)%3B Has 759 Blast hits to 705 proteins in 28 species: Archae - 0%3B Bacteria - 15%3B Metazoa - 0%3B Fungi - 10%3B Plants - 734%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis.
Encodes a dehydrin protein whose expression is induced early on in response to dehydration stress. This gene's expression to cold occurs in two waves%2C with early induction occurring within 1 h and secondary induction occurring 5 h after the beginning of cold stress. Expression is also induced in response to ABA but not in response to 2%2C4-D%2C BA%2C and GA3. ERD14 protein is capable of binding Ca2+%2C especially when the protein is phosphorylated.
Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G76370.1)%3B Has 115469 Blast hits to 114023 proteins in 4226 species: Archae - 107%3B Bacteria - 13502%3B Metazoa - 42790%3B Fungi - 9725%3B Plants - 32710%3B Viruses - 380%3B Other Eukaryotes - 16255 (source: NCBI BLink).
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism.
dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins. Not expressed in roots (qRT-PCR).
Encodes a protein disulfide isomerase-like (PDIL) protein%2C a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members%2C transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol%2C beta-mercaptoethanol%2C and tunicamycin).
PPPDE putative thiol peptidase family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862%2C eukaryotic (InterPro:IPR008580)%3B BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT4G25680.1)%3B Has 753 Blast hits to 753 proteins in 154 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 205%3B Fungi - 55%3B Plants - 348%3B Viruses - 0%3B Other Eukaryotes - 145 (source: NCBI BLink).
Heavy metal transport/detoxification superfamily protein %3B FUNCTIONS IN: metal ion binding%3B INVOLVED IN: metal ion transport%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121)%3B BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G48290.1)%3B Has 932 Blast hits to 701 proteins in 113 species: Archae - 0%3B Bacteria - 150%3B Metazoa - 39%3B Fungi - 24%3B Plants - 521%3B Viruses - 17%3B Other Eukaryotes - 181 (source: NCBI BLink).
Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H%2C IRX9 homolog)%3B AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H%2C IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9%2C I14H is redundant with IRX14. IRX9 or I9H do not complement IRX14%2C IRX14 or I14H do not complement IRX9.
Encodes AtOEP16%2C a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment.
Encodes a member of the glycerophosphodiester phosphodiesterase (GDPD) family. Has glycerophosphodiester phosphodiesterase activity. Functions in maintaining cellular phosphate homeostasis under phosphate starvation.
Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay.
Protein of unknown function (DUF3537)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT1G50630.1)%3B Has 143 Blast hits to 143 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 141%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).
Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G79620.1)%3B Has 92372 Blast hits to 91537 proteins in 3916 species: Archae - 61%3B Bacteria - 9295%3B Metazoa - 35380%3B Fungi - 6696%3B Plants - 28617%3B Viruses - 208%3B Other Eukaryotes - 12115 (source: NCBI BLink).
Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower%2C leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1%2C At2g38530/LTP2%2C At5g59320/LTP3%2C At5g59310/LTP4%2C At3g51600/LTP5%2C At3g08770/LTP6%2C At2g15050/LTP7%2C At2g18370/LTP8%2C At2g15325/LTP9%2C At5g01870/LTP10%2C At4g33355/LTP11%2C At3g51590/LTP12%2C At5g44265/LTP13%2C At5g62065/LTP14%2C At4g08530/LTP15.
Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment%3B although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1%2C At5g44420/PDF1.2a%2C At2g26020/PDF1.2b%2C At5g44430/PDF1.2c%2C At2g26010/PDF1.3%2C At1g19610/PDF1.4%2C At1g55010/PDF1.5%2C At2g02120/PDF2.1%2C At2g02100/PDF2.2%2C At2g02130/PDF2.3%2C At1g61070/PDF2.4%2C At5g63660/PDF2.5%2C At2g02140/PDF2.6%2C At5g38330/PDF3.1 and At4g30070/PDF3.2.
Protein of unknown function (DUF295)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G05540.1)%3B Has 206 Blast hits to 198 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 206%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G16670.1)%3B Has 118495 Blast hits to 117144 proteins in 4669 species: Archae - 109%3B Bacteria - 13491%3B Metazoa - 44039%3B Fungi - 9996%3B Plants - 33355%3B Viruses - 385%3B Other Eukaryotes - 17120 (source: NCBI BLink).
Encodes chalcone synthase (CHS)%2C a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism.
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1%2C At5g44420/PDF1.2a%2C At2g26020/PDF1.2b%2C At5g44430/PDF1.2c%2C At2g26010/PDF1.3%2C At1g19610/PDF1.4%2C At1g55010/PDF1.5%2C At2g02120/PDF2.1%2C At2g02100/PDF2.2%2C At2g02130/PDF2.3%2C At1g61070/PDF2.4%2C At5g63660/PDF2.5%2C At2g02140/PDF2.6%2C At5g38330/PDF3.1 and At4g30070/PDF3.2.
PLATZ transcription factor family protein%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734)%3B BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT1G21000.1)%3B Has 404 Blast hits to 404 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 0%3B Plants - 402%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes HUELLENLOS (HLL)%2C a mitochondrial ribosome protein%2C similar to L14 ribosomal protein of eubacteria. HLL is essential for normal ovule development.
Arabidopsis-autoinhibited Ca2+ -ATPase%2C isoform 8%2C contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.
One of three genes in A. thaliana encoding multiprotein bridging factor 1%2C a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is specifically elevated in response to pathogen infection%2C salinity%2C drought%2C heat%2C hydrogen peroxide%2C and application of abscisic acid or salicylic acid. Constitutive expression enhances the tolerance of transgenic plants to various biotic and abiotic stresses.
Encodes a CoA pyrophosphatase%2C also has ppGpp pyrophosphohydrolase and exhibits minor activity of NADH pyrophosphatase. Most strongly expressed in embryo cotyledon and hypocotyl%2C flower%2C and phloem of vascular tissue. Over-expression mutant had a bigger plant with wider rosette.
Encodes an aromatic aldehyde synthase (AtAAS)%2C which catalyzes the in vitro conversion of phenylalanine and 3%2C4-dihydroxy-L-phenylalanine to phenylacetaldehyde and dopaldehyde%2C respectively.
Encodes a nuclear-localized MAP kinase phosphatase. Plants with reduced levels of MKP2 transcripts are hypersensitive to ozone and ozone-mediated activation of MPK3 and MPK6 is prolonged in these plants.
Encodes a member of the dehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.
Mutant has additional lateral organs and phyllotaxy defect. Encodes a homeodomain transcription factor. Has sequence similarity to the Arabidopsis ovule development regulator Bell1. Binds directly to the AGAMOUS cis-regulatory element. Its localization to the nucleus is dependent on the coexpression of either STM or BP.
Plant protein of unknown function (DUF868)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868%2C plant (InterPro:IPR008586)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF868) (TAIR:AT3G04860.1)%3B Has 292 Blast hits to 290 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 292%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes a class 2 non-symbiotic hemoglobin. Over-expression of AHb2 in seeds led to a 40%25 increase in the total fatty acid content of developing and mature seeds in three subsequent generations. This was mainly due to an increase in the poly-unsaturated C18:2 (omega-6) linoleic and C18:3 (omega-3) alpha-linolenic acids.
Encodes a Type-A response regulator that is responsive to cytokinin treatment. Its C-ter domain is very short in comparison to other Arabidopsis ARRs (17 total). Arr6 protein is stabilized by cytokinin.
The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates.
Encodes an arabinogalactan protein that is expressed in pollen%2C pollen sac and pollen tube. Loss of AGP11 function results in decreased fertility due to defects in pollen tube growth.
Glycine-rich protein (AtGRP2b). Also named as CSP4 (cold shock domain protein 4) containing a well conserved cold shock domain (CSD) and glycine-rich motifs interspersed by two retroviral-like CCHC zinc fingers. AtCSP4 is expressed in all tissues but accumulates in reproductive tissues and those undergoing cell divisions. Overexpression of AtCSP4 reduces silique length and induces embryo lethality.
Encodes a member of the basic helix-loop-helix transcription factor family protein. Functions as a key regulator of iron-deficiency responses independent of the master regulator FIT. Likely regulates genes involved in the distribution of iron within the plant.
Protein of unknown function (DUF581)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT1G74940.1)%3B Has 476 Blast hits to 476 proteins in 20 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 476%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes a protein shown to have methyl jasmonate esterase activity in vitro. This protein does not act on methyl IAA%2C MeSA%2C MeGA4%2C or MEGA9 in vitro.
Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins.
Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria. Though similar to mannitol dehydrogenases%2C this enzyme does not have mannitol dehydrogenase activity.
early-responsive to dehydration 4 (ERD4)%3B INVOLVED IN: response to water deprivation%3B LOCATED IN: plasma membrane%2C chloroplast%2C vacuole%2C membrane%2C chloroplast envelope%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864)%3B BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT4G02900.1)%3B Has 1361 Blast hits to 1266 proteins in 197 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 183%3B Fungi - 651%3B Plants - 396%3B Viruses - 0%3B Other Eukaryotes - 131 (source: NCBI BLink).
Encodes a hemoglobin (Hb) with a central domain similar to the 'truncated Hbs of bacteria%2C protozoa and fungi. The 3D structure of these types of Hbs is a 2-on-2 arrangement of alpha-helices as opposed to the 3-on-3 arrangement of the standard globin fold. This type of Hb is not found in animals or yeast.
Protein of unknown function (DUF1068)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1068) (TAIR:AT2G32580.1)%3B Has 119 Blast hits to 119 proteins in 15 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 0%3B Fungi - 0%3B Plants - 116%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
A member of EXO70 gene family%2C putative exocyst subunits%2C conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes%2C which can be classified into eight clusters on the phylogenetic tree.
Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence.
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Encodes a protein shown to have carboxylesterase activity%2C methyl salicylate esterase activity%2C and methyl IAA esterase activity in vitro. This protein does not act on methyl JA%2C MeGA4%2C or MEGA9 in vitro. MES7 appears to be involved in MeSA hydrolysis in planta. Expression of MES7 can restore systemic acquired resistance in SAR-deficient tobacco plants.
Encodes a protein homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression down-regulated by cold temperature. It is involved in the desaturation of VLCFAs to make monounsaturated VLCFAs.
Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene.
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1%2C At5g44420/PDF1.2a%2C At2g26020/PDF1.2b%2C At5g44430/PDF1.2c%2C At2g26010/PDF1.3%2C At1g19610/PDF1.4%2C At1g55010/PDF1.5%2C At2g02120/PDF2.1%2C At2g02100/PDF2.2%2C At2g02130/PDF2.3%2C At1g61070/PDF2.4%2C At5g63660/PDF2.5%2C At2g02140/PDF2.6%2C At5g38330/PDF3.1 and At4g30070/PDF3.2.
The Arabidopsis protein AtGGH2 is a gamma-glutamyl hydrolase acting specifically on monoglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members%2C two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose%2C presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff %26 Wolf Scheible%2C 2010%2C personal communication).
The WAG2 and its homolog%2C WAG1 each encodes protein-serine/threonine kinase that are nearly 70%25 identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus%2C all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees)%2C indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700%2C WAG1/AT1G53700%2C and WAG2/AT3G14370) abolishes the formation of cotyledons.
Protein of unknown function (DUF707)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT4G12840.2)%3B Has 310 Blast hits to 308 proteins in 22 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 0%3B Fungi - 0%3B Plants - 303%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).
Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter.
Encodes a subunit of RNA polymerase IV (aka RNA polymerase D). NRPD2b is closely related to NRPD2a%2C but has lower levels of transcription and does not affect endogenous siRNA when mutated.
Encodes a Golgi apparatus-localized protein whose expression of the CGR3 gene is correlated with that of several cell wall biosynthetic genes and that may be involved in pectin modifications.
CONTAINS InterPro DOMAIN/s: Pleckstrin-like%2C plant (InterPro:IPR013666)%2C Protein of unknown function DUF828 (InterPro:IPR008546)%2C Pleckstrin homology (InterPro:IPR001849)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT5G47440.1)%3B Has 205 Blast hits to 188 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 3%3B Plants - 199%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).
BEST Arabidopsis thaliana protein match is: Zinc finger%2C C3HC4 type (RING finger) family protein (TAIR:AT2G24480.1)%3B Has 27 Blast hits to 27 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 27%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Family of unknown function (DUF662) %3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033)%3B BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT2G36410.1)%3B Has 2850 Blast hits to 2486 proteins in 375 species: Archae - 84%3B Bacteria - 284%3B Metazoa - 1164%3B Fungi - 182%3B Plants - 322%3B Viruses - 9%3B Other Eukaryotes - 805 (source: NCBI BLink).
Encodes a methyl IAA esterase. Methyl IAA is believed to be an inactive form of auxin that needs to be demethylated to exert a biological effect. MES17 does not act on methyl JA%2C MeSA%2C MeGA4%2C or MEGA9 in vitro. This gene is expressed in several tissues of seedlings and adult plants%2C with a higher relative level of expression in the seedling shoot apex and the adult stem.
Protein of unknown function (DUF1218)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT3G15480.1)%3B Has 528 Blast hits to 528 proteins in 99 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 528%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Protein of unknown function (DUF620)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF620) (TAIR:AT3G55720.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family%2C a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box%2C which encodes the SBP-domain%2C required and sufficient for interaction with DNA. It binds DNA%2C may directly regulate AP1%2C and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Monopteros target gene.
LIGHT SENSITIVE HYPOCOTYLS 3 (LSH3)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G07090.1)%3B Has 309 Blast hits to 309 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 12%3B Fungi - 0%3B Plants - 297%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members%2C two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose%2C presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff %26 Wolf Scheible%2C 2010%2C personal communication).
AtDTX1 (At2g04040) has been identified as a detoxifying efflux carrier for plant-derived antibiotics and other toxic compounds%2C including CD2+. Mistakenly referred to as At2g04070 in PMID:11739388.
encodes a NAC transcription factor whose expression is induced by drought%2C high salt%2C and abscisic acid. This gene binds to ERD1 promoter in vitro.
SAUR-like auxin-responsive protein family %3B CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676)%3B BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT4G34780.1)%3B Has 925 Blast hits to 921 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 924%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
Encodes a protein with galactose kinase activity. The gene was shown to complement the yeast %C3%84gal1 mutant defective in the galactokinase gene GAL1.
Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold for RNA processing machineries. Ubiquitously expressed and localize to the nucleus.
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.10). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.1.
Domain of unknown function (DUF23)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166)%3B BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G44670.1)%3B Has 199 Blast hits to 199 proteins in 36 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 44%3B Fungi - 2%3B Plants - 116%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).
Lactoylglutathione lyase / glyoxalase I family protein%3B CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360)%3B BEST Arabidopsis thaliana protein match is: Lactoylglutathione lyase / glyoxalase I family protein (TAIR:AT1G15380.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems. Likely to function as a carrier to transport anthocyanin from the cytosol to tonoplasts.
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
alpha/beta-Hydrolases superfamily protein%3B Has 1062 Blast hits to 1062 proteins in 417 species: Archae - 16%3B Bacteria - 763%3B Metazoa - 1%3B Fungi - 28%3B Plants - 66%3B Viruses - 0%3B Other Eukaryotes - 188 (source: NCBI BLink).
GO
domain
Definition
P-value
protein binding
molecular_function
"Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules)." [GOC:go_curators]
3.80e-02
ATP binding
molecular_function
"Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator." [ISBN:0198506732]
2.68e-02
response to stress
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation)." [GOC:mah]
3.93e-04
response to temperature stimulus
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus." [GOC:hb]
1.04e-04
response to cold
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism." [GOC:lr]
5.11e-07
response to water deprivation
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water." [GOC:lr]
1.39e-06
response to water
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water." [GOC:jl]
6.73e-05
cold acclimation
biological_process
"Any process that increases freezing tolerance of an organism in response to low, nonfreezing temperatures." [GOC:syr]
2.59e-04
response to hormone
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus." [GOC:jl]
3.71e-03
response to abscisic acid
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus." [GOC:jl]
1.58e-03
heat acclimation
biological_process
"Any process that increases heat tolerance of an organism in response to high temperatures." [GOC:tair_curators]
3.75e-02
cellular response to oxidative stress
biological_process
"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals." [GOC:mah]
4.82e-02
hyperosmotic salinity response
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment." [GOC:jl]
2.68e-02
response to stimulus
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." [GOC:ai, GOC:bf]
