Translation protein SH3-like family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: response to cold%2C translation%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991)%2C Ribosomal protein L26%2C eukaryotic/archaeal (InterPro:IPR005756)%2C Ribosomal protein L24%2C SH3-like (InterPro:IPR014723)%2C Ribosomal protein L24/L26%2C conserved site (InterPro:IPR005825)%2C KOW (InterPro:IPR005824)%3B BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT5G67510.1)%3B Has 1113 Blast hits to 1113 proteins in 414 species: Archae - 314%3B Bacteria - 5%3B Metazoa - 375%3B Fungi - 141%3B Plants - 96%3B Viruses - 0%3B Other Eukaryotes - 182 (source: NCBI BLink).
secE/sec61-gamma protein transport protein%3B FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity%3B INVOLVED IN: intracellular protein transport%2C protein targeting%2C protein transport%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein translocase SEC61 complex gamma subunit (InterPro:IPR008158)%2C Protein secE/sec61-gamma protein (InterPro:IPR001901)%3B BEST Arabidopsis thaliana protein match is: secE/sec61-gamma protein transport protein (TAIR:AT5G50460.1)%3B Has 573 Blast hits to 573 proteins in 208 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 240%3B Fungi - 132%3B Plants - 109%3B Viruses - 0%3B Other Eukaryotes - 92 (source: NCBI BLink).
encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Enzyme involved in the ABA signaling during seed germination%2C dormancy and seedling growth.
Encodes a 22%26#945%3B hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small%2C compressed rosette%2C reduced internode length%2C and reduced fertility%2C appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues%2C and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-%2C C28- and C29-sterols. Cholesterol was the best substrate%2C followed by campesterol. Sitosterol was a poor substrate.
encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.
Encodes a member of the R2R3 transcription factor gene family. Expressed in response to potassium deprivation and auxin. Involved in lateral root development. Interacts with ARF7 and regulates the expression of some auxin responsive genes.
Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1%2C AT5G67500/VDAC2%2C AT5G15090/VDAC3%2C AT5G57490/VDAC4%2C AT5G15090/VDAC5). VDACs are reported to be porin-type%2C beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
Heavy metal transport/detoxification superfamily protein %3B FUNCTIONS IN: copper ion binding%2C metal ion binding%3B INVOLVED IN: copper ion transport%2C metal ion transport%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121)%3B BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT3G56891.1)%3B Has 948 Blast hits to 923 proteins in 65 species: Archae - 2%3B Bacteria - 55%3B Metazoa - 0%3B Fungi - 0%3B Plants - 888%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).
UGT72E1 is an UDPG:coniferyl alcohol glucosyltransferase which specifically glucosylates sinapyl- and coniferyl aldehydes. The enzyme is thought to be involved in lignin metabolism.
Encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. Involved in defense and freezing stress responses. There are 16 members in this subfamily including RAP2.1%2C RAP2.9 and RAP2.10.
Leucine-rich repeat (LRR) family protein%3B BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein A (TAIR:AT1G09760.1)%3B Has 87837 Blast hits to 40058 proteins in 1793 species: Archae - 912%3B Bacteria - 10630%3B Metazoa - 29004%3B Fungi - 15487%3B Plants - 5654%3B Viruses - 1023%3B Other Eukaryotes - 25127 (source: NCBI BLink).
Encode CYCD3%3B3%2C a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.
Encodes a phosphatase with low in vitro tyrosine phosphatase activity that is NOT capable of dephosphorylating in vitro the 3'phosphate group of PI3P%2C PI(3%2C4)P2.
Protein of unknown function (DUF1685)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C 4 anthesis%2C C globular stage%2C 4 leaf senescence stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT4G33985.1)%3B Has 199 Blast hits to 199 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 199%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Kip-related protein (KRP) gene%2C encodes CDK (cyclin-dependent kinase) inhibitor (CKI)%2C negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Gene was isolated from a yeast two hybrid screen as an interacting protein of CDC2A. Recombinant protein has a strong kinase inhibitor activity in vitro. Transcript is expressed in all tissues examined but is differentially distributed from ICK1. Controls the onset of the endoreduplication cycle through inhibition of CDKA%3B1. The KRP2 protein abundance is regulated by proteolysis through CDKB1%3B1 phosphorylation.
Nuclear gene that encodes a plastidial division protein (FtsZ2-2). FtsZ2-2 is involved in chloroplast morphology and internal organisation in addition to participating in chloroplast partition
Encodes an IAA-amido synthase that conjugates Ala%2C Asp%2C Phe%2C and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3).
Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis. Not responsive to auxin or ethylene stimulus (qRT-PCR).
Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1%2Cwith more than 85%25 a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf%2C control of leaf shape%2C size and symmetry%2C male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium%2C middle%2C and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs)%2C suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis%2C suggesting that these cells are defective. In addition%2C the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.
Although this enzyme is predicted to encode a strictosidine synthase (SS)%2C it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.
Encodes a member of the Rop subfamily of Rho GTPases in Arabidopsis that contains a putative farnesylation motif. It is localized to the plasma membrane and involved in the negative regulation of ABA signalling.
A-type cyclin-dependent kinase. Together with its specific inhibitor%2C the Kip-related protein%2C KRP2 they regulate the mitosis-to-endocycle transition during leaf development. Dominant negative mutations abolish cell division. Loss of function phenotype has reduced fertility with failure to transmit via pollen. Pollen development is arrested at the second mitotic division. Expression is regulated by environmental and chemical signals. Part of the promoter is responsible for expression in trichomes. Functions as a positive regulator of cell proliferation during development of the male gametophyte%2C embryo and endosperm. Phosphorylation of threonine 161 is required for activation of its associated kinase.
Plant protein of unknown function (DUF247)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247%2C plant (InterPro:IPR004158)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50170.1)%3B Has 152 Blast hits to 125 proteins in 9 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 152%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Plant protein of unknown function (DUF247)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247%2C plant (InterPro:IPR004158)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50140.1)%3B Has 1131 Blast hits to 1013 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1129%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).
Encodes a protein with sequence similarity to peroxidases that is involved in lignin biosynthesis. Loss of function mutations show abnormal development of xylem fibers and reduced levels of lignin biosynthetic enxymes.
TRAF-like family protein%3B CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974)%2C MATH (InterPro:IPR002083)%3B BEST Arabidopsis thaliana protein match is: Meprin and TRAF (MATH) homology domain-containing protein (TAIR:AT3G44800.1)%3B Has 857 Blast hits to 737 proteins in 68 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 57%3B Fungi - 19%3B Plants - 734%3B Viruses - 0%3B Other Eukaryotes - 45 (source: NCBI BLink).
ATP binding microtubule motor family protein%3B FUNCTIONS IN: microtubule motor activity%2C ATP binding%3B INVOLVED IN: microtubule-based movement%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3490 (InterPro:IPR021881)%2C Kinesin%2C motor region%2C conserved site (InterPro:IPR019821)%2C Kinesin%2C motor domain (InterPro:IPR001752)%3B BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT5G66310.1)%3B Has 10829 Blast hits to 10352 proteins in 409 species: Archae - 0%3B Bacteria - 117%3B Metazoa - 4834%3B Fungi - 1385%3B Plants - 1921%3B Viruses - 3%3B Other Eukaryotes - 2569 (source: NCBI BLink).
Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems. Co-expressed with CHS.
Encodes a geranyllinalool synthase that produces a precursor to TMTT%2C a volatile plant defense C16-homoterpene. GES transcript levels rise in response to alamethicin%2C a fungal peptide mixture that damages membranes. This transcriptional response is blocked in JA biosynthetic and JA signaling mutants%2C but GES transcript levels still rise in response to alamethicin in mutants with salicylic acid and ethylene biosynthetic and/or signaling defects. GES transcripts also accumulate in response to a larval infestation. This enzyme does not localize to the plastids%2C and it may be present in the cytosol or endoplasmic reticulum.
A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3?-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3?-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase
Leucine-rich repeat protein kinase family protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway%2C protein amino acid phosphorylation%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: BRI1 like (TAIR:AT1G55610.2)%3B Has 217966 Blast hits to 139933 proteins in 5038 species: Archae - 191%3B Bacteria - 21618%3B Metazoa - 66649%3B Fungi - 11025%3B Plants - 92428%3B Viruses - 434%3B Other Eukaryotes - 25621 (source: NCBI BLink).
ABI five binding protein 3 (AFP3)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463)%3B BEST Arabidopsis thaliana protein match is: ABI five binding protein (TAIR:AT1G69260.1)%3B Has 196 Blast hits to 190 proteins in 23 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 4%3B Plants - 184%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).
Protein of unknown function (DUF626)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626%2C Arabidopsis thaliana (InterPro:IPR006462)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT4G29550.1)%3B Has 165 Blast hits to 165 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 165%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays%2C and DDB1b in co-IP assays%2C and may be involved in the formation of a CUL4-based E3 ubiquitin ligase
Plant protein of unknown function (DUF247)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247%2C plant (InterPro:IPR004158)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G22550.2)%3B Has 1140 Blast hits to 1020 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1140%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920)%2C in vitro experiements show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment.
Encodes PPsPase1%2C a pyrophosphate-specific phosphatase catalyzing the specific cleavage of pyrophosphate (Km 38.8 uM) with an alkaline catalytic pH optimum. Expression is upregulated in the shoot of cax1/cax3 mutant.
Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling and is a positive modulator of natural leaf senescence. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF%2C CSN and 26S proteasome components.
Plant protein of unknown function (DUF247)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: leaf apex%2C petal%2C leaf whorl%2C sepal%2C flower%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247%2C plant (InterPro:IPR004158)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50170.1)%3B Has 1189 Blast hits to 1046 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1189%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes a member of the cytochrome p450 family that serves as a control point between multiple photoreceptor systems and brassinosteroid signal transduction. Involved in brassinolide metabolism. Mediates response to a variety of light signals including hypocotyl elongation and cotyledon expansion.
SAUR-like auxin-responsive protein family %3B CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676)%3B BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT5G18050.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
A member of a large family of seven-transmembrane domain proteins specific to plants%2C homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins%2C with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO11 belongs to the clade I%2C with AtMLO4 and AtMLO14. The gene is expressed during early seedling growth (in primary root)%2C in root tips and lateral root primordia%2C and in very young leaves%2C and in flowers and fruit abscission zone%2C as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli%2C suggesting functional redundancy%2C co-function%2C or antagonistic function(s).
Encodes a member of MEKK subfamily. Target promoter of the male germline-specific transcription factor DUO1. Involved in osmotic stress response via regulation of MPK6 activity.
Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3%2C which is not to be confused with AMY3/At1g69830).
Homolog to AT5G22940%2C a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain. It is expressed specifically in developing vessels and fiber cells%2C and FRA8 is targeted to Golgi. Mutants have irregular xylem formation%2C reduced cellulose levels and plants are smaller than normal siblings.
Domain of unknown function (DUF220)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863)%3B BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF220) (TAIR:AT1G70480.2)%3B Has 154 Blast hits to 140 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 154%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns. WLIM1%2C WLIM2a%2C and WLIM2b are widely expressed%2C whereas PLIM2a%2C PLIM2b%2C and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.
transposable element gene [Source:TAIR;Acc:AT1G42610]
GO
domain
Definition
P-value
phenylpropanoid metabolic process
biological_process
"The chemical reactions and pathways involving aromatic derivatives of trans-cinnamic acid." [GOC:jl]
3.98e-02
lignin metabolic process
biological_process
"The chemical reactions and pathways involving lignins, a class of polymers of phenylpropanoid units." [GOC:lr, GOC:yl]
2.84e-02
phosphatase activity
molecular_function
"Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate." [EC:3.1.3, EC:3.1.3.41, GOC:curators, GOC:pg]
3.98e-02
secondary metabolic process
biological_process
"The chemical reactions and pathways resulting in many of the chemical changes of compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. In multicellular organisms secondary metabolism is generally carried out in specific cell types, and may be useful for the organism as a whole. In unicellular organisms, secondary metabolism is often used for the production of antibiotics or for the utilization and acquisition of unusual nutrients." [GOC:go_curators]
