Show all genes, phenotypes and metabolites for which the QTL profile correlates with that of the query profile above the set cut-off, the query trait is in the first row.
Strongly correlating QTL profiles could indicate common regulation.
Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
RGP3 is a UDP-arabinose mutase that catalyzes the interconversion between the pyranose and furanose forms of UDP-L-arabinose. It is a reversibly autoglycosylated protein. Fluorescently-tagged RGP3 is found in the cytosol and associated with Golgi-like particles when expressed in tobacco leaves. An RGP3-YFP fusion protein under the control a native promoter can be found in the endosperm of Arabidopsis embryos during the linear and bent cotyledon stages of development.
The mRNA of this gene is expressed in viable seeds. Its detection in a dry seed lot has potential for use as a molecular marker for germination performance as absence of expression correlates with decreased germination.
Protein of unknown function (DUF300)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT5G26740.3)%3B Has 926 Blast hits to 920 proteins in 197 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 354%3B Fungi - 191%3B Plants - 245%3B Viruses - 0%3B Other Eukaryotes - 136 (source: NCBI BLink).
Protein of unknown function (DUF760)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF760) (TAIR:AT5G48590.1)%3B Has 147 Blast hits to 143 proteins in 27 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 0%3B Fungi - 0%3B Plants - 134%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).
Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes.
Arabidopsis NSN1 encodes a nucleolar GTP- binding protein and is required for maintenance of inflorescence meristem identity and floral organ development.
Encodes a gene involved in plant mitochondrial recombination surveillance. Disruption of this gene in combination with a mutation in MSH1 results in extensive rearrangement of the mitochondrial genome and dramatic changes in plant growth.
O-fucosyltransferase family protein%3B CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378)%3B BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT5G15740.1)%3B Has 830 Blast hits to 821 proteins in 30 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 830%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes an integral plasma membrane protein. Functionally complements the yeast mid1 mutant%2C a deficiency of Ca2+ influx. Involved in Ca2+ influx and mechanical sensing in roots. An over-expression line showed increased Ca2+ uptake than the wild type plant. The primary root of a knock-out mutant failed to penetrate a harder agar medium from a softer medium.
CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (InterPro:IPR015940)%2C Protein of unknown function DUF1421 (InterPro:IPR010820)%2C UBA-like (InterPro:IPR009060)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1421) (TAIR:AT5G14540.1)%3B Has 90069 Blast hits to 50370 proteins in 2078 species: Archae - 118%3B Bacteria - 11979%3B Metazoa - 33430%3B Fungi - 17845%3B Plants - 12302%3B Viruses - 1904%3B Other Eukaryotes - 12491 (source: NCBI BLink).
CDC2C (cdc2cAt)%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G01085.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
Encodes a vacuolar membrane-localized glucose transporter that can also transport fructose. Mutations in these gene have effects on seed germination and time to flowering.
40s ribosomal protein SA B (RPSAb)%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C cytosolic ribosome%2C chloroplast%2C membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865)%2C Ribosomal protein S2%2C conserved site (InterPro:IPR018130)%2C Ribosomal protein S2%2C eukaryotic/archaeal (InterPro:IPR005707)%3B BEST Arabidopsis thaliana protein match is: 40s ribosomal protein SA (TAIR:AT1G72370.1)%3B Has 3452 Blast hits to 3450 proteins in 1205 species: Archae - 263%3B Bacteria - 1638%3B Metazoa - 562%3B Fungi - 334%3B Plants - 225%3B Viruses - 0%3B Other Eukaryotes - 430 (source: NCBI BLink).
Regulator of chromosome condensation (RCC1) family protein%3B FUNCTIONS IN: chromatin binding%2C Ran GTPase binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091)%2C Regulator of chromosome condensation%2C RCC1 (InterPro:IPR000408)%3B BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G16040.1)%3B Has 23677 Blast hits to 6532 proteins in 503 species: Archae - 101%3B Bacteria - 3224%3B Metazoa - 7700%3B Fungi - 1627%3B Plants - 3082%3B Viruses - 4%3B Other Eukaryotes - 7939 (source: NCBI BLink).
Encodes a G group bZIP transcription factor family member that can bind cis elements with an ACGT core%2C such as G-box%2C Hex%2C C-box and As-1. The protein is localized in the nucleus and can homodimerize and can heterodimerize with other G group members.
zinc finger (C3HC4-type RING finger) family protein%3B BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G56590.1)%3B Has 18036 Blast hits to 9011 proteins in 812 species: Archae - 58%3B Bacteria - 3529%3B Metazoa - 8497%3B Fungi - 1587%3B Plants - 1132%3B Viruses - 68%3B Other Eukaryotes - 3165 (source: NCBI BLink).
GO
domain
Definition
P-value
integral component of plasma membrane
cellular_component
"The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane." [GOC:dos, GOC:go_curators]