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Show all genes, phenotypes and metabolites for which the QTL profile correlates with that of the query profile above the set cut-off, the query trait is in the first row. Strongly correlating QTL profiles could indicate common regulation.
Trait ID (count=21) Type Name Pearson's Correlation Coefficient Position Description
AT2G34630 gene GPS1 1.00 2:14578444 Encodes a geranyl diphosphate synthase. RNAi lines are dwarf. T-DNA knock-out lines are embryo lethal.
AT3G46500 gene 0.94 3:17120351 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C iron ion binding%3B INVOLVED IN: oxidation reduction%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283)%2C Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G46490.1)%3B Has 7979 Blast hits to 7962 proteins in 970 species: Archae - 0%3B Bacteria - 1125%3B Metazoa - 119%3B Fungi - 1055%3B Plants - 4286%3B Viruses - 0%3B Other Eukaryotes - 1394 (source: NCBI BLink).
AT1G08150 gene ATCHX5 0.93 1:2556191 member of Putative Na+/H+ antiporter family
AT5G22410 gene RHS18 0.93 5:7426310 root hair specific 18 (RHS18)%3B FUNCTIONS IN: peroxidase activity%2C heme binding%3B INVOLVED IN: oxidation reduction%2C response to oxidative stress%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: root hair%2C root%2C synergid%3B CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255)%2C Plant peroxidase (InterPro:IPR000823)%2C Peroxidases heam-ligand binding site (InterPro:IPR019793)%2C Peroxidase%2C active site (InterPro:IPR019794)%2C Haem peroxidase%2C plant/fungal/bacterial (InterPro:IPR002016)%3B BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G17820.1)%3B Has 3762 Blast hits to 3747 proteins in 161 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 14%3B Plants - 3739%3B Viruses - 0%3B Other Eukaryotes - 8 (source: NCBI BLink).
AT1G45030 gene 0.93 1:0 transposable element gene [Source:TAIR;Acc:AT1G45030]
AT4G08830 gene 0.92 4:5623753 transposable element gene [Source:TAIR;Acc:AT4G08830]
AT5G38910 gene 0.92 5:15578749 RmlC-like cupins superfamily protein%3B FUNCTIONS IN: manganese ion binding%2C nutrient reservoir activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%2C apoplast%3B CONTAINS InterPro DOMAIN/s: Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C Germin (InterPro:IPR001929)%2C Germin%2C manganese binding site (InterPro:IPR019780)%3B BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G38940.1)%3B Has 1503 Blast hits to 1497 proteins in 89 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 0%3B Fungi - 37%3B Plants - 1447%3B Viruses - 0%3B Other Eukaryotes - 15 (source: NCBI BLink).
AT5G66590 gene 0.91 5:26573964 CAP (Cysteine-rich secretory proteins%2C Antigen 5%2C and Pathogenesis-related 1 protein) superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%2C extracellular region%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related (InterPro:IPR001283)%2C SCP-like extracellular (InterPro:IPR014044)%3B BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins%2C Antigen 5%2C and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT5G57625.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
AT1G01800 gene 0.91 1:293246 NAD(P)-binding Rossmann-fold superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C binding%2C catalytic activity%3B INVOLVED IN: oxidation reduction%2C metabolic process%3B LOCATED IN: plant-type cell wall%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040)%2C Glucose/ribitol dehydrogenase (InterPro:IPR002347)%2C Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198)%3B BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G61220.1)%3B Has 66869 Blast hits to 66825 proteins in 3161 species: Archae - 673%3B Bacteria - 45998%3B Metazoa - 3911%3B Fungi - 3425%3B Plants - 2362%3B Viruses - 0%3B Other Eukaryotes - 10500 (source: NCBI BLink).
AT3G31365 gene 0.91 3:12725745 transposable element gene [Source:TAIR;Acc:AT3G31365]
AT2G06760 gene 0.91 2:2691303 transposable element gene [Source:TAIR;Acc:AT2G06760]
AT2G14796 gene 0.91 2:6351159 transposable element gene [Source:TAIR;Acc:AT2G14796]
AT5G46050 gene PTR3 0.91 5:18674968 Encodes a di- and tri-peptide transporter involved in responses to wounding%2C virulent bacterial pathogens%2C and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.
AT2G23945 gene 0.91 2:10185229 Eukaryotic aspartyl protease family protein%3B FUNCTIONS IN: aspartic-type endopeptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109)%2C Peptidase aspartic%2C catalytic (InterPro:IPR009007)%2C Peptidase A1 (InterPro:IPR001461)%3B BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT4G30030.1)%3B Has 2014 Blast hits to 2006 proteins in 156 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 158%3B Fungi - 70%3B Plants - 1675%3B Viruses - 0%3B Other Eukaryotes - 111 (source: NCBI BLink).
AT2G47560 gene 0.91 2:19511717 RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: root%2C pedicel%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: AtL5 (TAIR:AT3G62690.1)%3B Has 10475 Blast hits to 10453 proteins in 314 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2615%3B Fungi - 944%3B Plants - 5266%3B Viruses - 125%3B Other Eukaryotes - 1525 (source: NCBI BLink).
AT5G62750 gene 0.91 5:25203425 unknown protein%3B Has 24942 Blast hits to 11726 proteins in 897 species: Archae - 48%3B Bacteria - 2086%3B Metazoa - 8361%3B Fungi - 2243%3B Plants - 1040%3B Viruses - 210%3B Other Eukaryotes - 10954 (source: NCBI BLink).
AT2G04395 gene 0.91 2:1528927 Nucleic acid-binding%2C OB-fold-like protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: telomere maintenance%3B LOCATED IN: nuclear chromosome%2C telomeric region%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Telomere end binding protein (InterPro:IPR011564)%3B BEST Arabidopsis thaliana protein match is: Nucleic acid-binding%2C OB-fold-like protein (TAIR:AT2G05210.3)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT1G07810 gene ECA1 0.91 1:2416178 Encodes an ER-type Ca2+-pumping ATPase.
AT2G07240 gene 0.90 2:3007102 cysteine-type peptidases%3Bcysteine-type peptidases%3B FUNCTIONS IN: cysteine-type peptidase activity%3B INVOLVED IN: proteolysis%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1985 (InterPro:IPR015410)%2C Peptidase C48%2C SUMO/Sentrin/Ubl1 (InterPro:IPR003653)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT3G13250 gene 0.90 3:4276747 transposable element gene [Source:TAIR;Acc:AT3G13250]
AT2G23808 gene 0.90 2:0 pseudogene of transcriptional factor B3 family protein [Source:TAIR;Acc:AT2G23808]