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Show all genes, phenotypes and metabolites for which the QTL profile correlates with that of the query profile above the set cut-off, the query trait is in the first row. Strongly correlating QTL profiles could indicate common regulation.
Trait ID (count=32) Type Name Pearson's Correlation Coefficient Position Description
AT4G23290 gene CRK21 1.00 4:12177734 Encodes a cysteine-rich receptor-like protein kinase.
AT4G24420 gene 0.97 4:12626640 RNA-binding (RRM/RBD/RNP motifs) family protein%3B Has 63 Blast hits to 59 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 14%3B Fungi - 0%3B Plants - 47%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).
AT4G19500 gene 0.97 4:10625562 nucleoside-triphosphatases%3Btransmembrane receptors%3Bnucleotide binding%3BATP binding%3B FUNCTIONS IN: transmembrane receptor activity%2C nucleoside-triphosphatase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: signal transduction%2C defense response%2C apoptosis%2C innate immune response%3B LOCATED IN: intrinsic to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C NB-ARC (InterPro:IPR002182)%2C Disease resistance protein (InterPro:IPR000767)%2C Toll-Interleukin receptor (InterPro:IPR000157)%2C Protein of unknown function DUF640 (InterPro:IPR006936)%3B BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16950.2)%3B Has 20045 Blast hits to 11477 proteins in 434 species: Archae - 7%3B Bacteria - 464%3B Metazoa - 257%3B Fungi - 40%3B Plants - 18821%3B Viruses - 4%3B Other Eukaryotes - 452 (source: NCBI BLink).
AT4G21900 gene PRORP3 0.96 4:11616338 Encodes a proteinaceous RNase P that supports RNase P activity in vivo in both organelles and the nucleus. It is also involved in the maturation of small nucleolar RNA (snoRNA) and mRNA.
AT4G24120 gene YSL1 0.96 4:12524186 Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1).
AT4G22270 gene MRB1 0.96 4:11773221 Encodes a plasma membrane protein involved in the positive regulation of organ size development. Overexpression results in organ size enlargement.
AT4G28100 gene 0.96 4:13965099 unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: anchored to plasma membrane%2C anchored to membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18050.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G27370 gene VIIIB 0.95 4:13694689 member of Myosin-like proteins
AT4G20170 gene GALS3 0.95 4:10896579 Domain of unknown function (DUF23)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166)%3B BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G44670.1)%3B Has 199 Blast hits to 199 proteins in 36 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 44%3B Fungi - 2%3B Plants - 116%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink).
AT4G20350 gene 0.94 4:10988037 oxidoreductases%3B FUNCTIONS IN: oxidoreductase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B Has 320 Blast hits to 320 proteins in 141 species: Archae - 0%3B Bacteria - 19%3B Metazoa - 112%3B Fungi - 69%3B Plants - 54%3B Viruses - 3%3B Other Eukaryotes - 63 (source: NCBI BLink).
AT4G28160 gene 0.94 4:13980316 hydroxyproline-rich glycoprotein family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to gibberellin stimulus%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C petal differentiation and expansion stage%2C D bilateral stage%3B BEST Arabidopsis thaliana protein match is: cell wall protein precursor%2C putative (TAIR:AT2G20870.1)%3B Has 15 Blast hits to 15 proteins in 4 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 15%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G19515 gene None 0.94 None:None None
AT4G23215 gene 0.94 4:12152900 pseudogene of cysteine-rich receptor-like protein kinase family protein [Source:TAIR;Acc:AT4G23215]
AT4G19530 gene 0.94 4:10651744 Encodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death.
AT4G23820 gene 0.94 4:12397038 Pectin lyase-like superfamily protein%3B FUNCTIONS IN: polygalacturonase activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Glycoside hydrolase%2C family 28 (InterPro:IPR000743)%2C Pectin lyase fold (InterPro:IPR012334)%2C Parallel beta-helix repeat (InterPro:IPR006626)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G41870.1)%3B Has 4183 Blast hits to 4168 proteins in 506 species: Archae - 6%3B Bacteria - 1472%3B Metazoa - 14%3B Fungi - 1146%3B Plants - 1414%3B Viruses - 0%3B Other Eukaryotes - 131 (source: NCBI BLink).
AT4G29540 gene LpxA 0.94 4:14497560 Encodes a UDP-N-acetylglucosamine acyltransferase.
AT4G25300 gene 0.94 4:12945120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors%2C oxidoreductase activity%3B INVOLVED IN: flavonoid biosynthetic process%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%3B BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G25310.1)%3B Has 8488 Blast hits to 8445 proteins in 990 species: Archae - 0%3B Bacteria - 1083%3B Metazoa - 108%3B Fungi - 972%3B Plants - 4966%3B Viruses - 0%3B Other Eukaryotes - 1359 (source: NCBI BLink).
AT1G74750 gene 0.93 1:28085753 Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C Smr protein/MutS2 C-terminal (InterPro:IPR002625)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G18900.2)%3B Has 54690 Blast hits to 14739 proteins in 296 species: Archae - 3%3B Bacteria - 64%3B Metazoa - 559%3B Fungi - 736%3B Plants - 51726%3B Viruses - 0%3B Other Eukaryotes - 1602 (source: NCBI BLink).
AT4G19540 gene INDH 0.93 4:10657289 Encodes a iron-suflur protein required for NADH dehydrogenase.
AT4G19950 gene 0.93 4:10809843 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44860.1)%3B Has 338 Blast hits to 330 proteins in 72 species: Archae - 2%3B Bacteria - 94%3B Metazoa - 7%3B Fungi - 0%3B Plants - 232%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).
AT4G19100 gene PAM68 0.93 4:10453415 Protein of unknown function (DUF3464)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3464 (InterPro:IPR021855)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3464) (TAIR:AT5G52780.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).
AT4G20830 gene 0.93 4:11155453 FAD-binding Berberine family protein%3B FUNCTIONS IN: electron carrier activity%2C oxidoreductase activity%2C FAD binding%2C catalytic activity%3B INVOLVED IN: response to oxidative stress%3B LOCATED IN: mitochondrion%2C apoplast%2C plasma membrane%2C vacuole%2C plant-type cell wall%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: FAD-binding%2C type 2 (InterPro:IPR016166)%2C Berberine/berberine-like (InterPro:IPR012951)%2C FAD linked oxidase%2C N-terminal (InterPro:IPR006094)%3B BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT4G20840.1)%3B Has 4327 Blast hits to 4201 proteins in 643 species: Archae - 38%3B Bacteria - 1800%3B Metazoa - 2%3B Fungi - 1615%3B Plants - 732%3B Viruses - 0%3B Other Eukaryotes - 140 (source: NCBI BLink).
AT4G21215 gene 0.92 4:11310348 unknown protein%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).
AT4G26790 gene 0.92 4:13487457 GDSL-like Lipase/Acylhydrolase superfamily protein%3B FUNCTIONS IN: hydrolase activity%2C acting on ester bonds%2C carboxylesterase activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 18 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Lipase%2C GDSL (InterPro:IPR001087)%3B BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G42990.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G22390 gene 0.92 4:11813313 F-box associated ubiquitination effector family protein%3B CONTAINS InterPro DOMAIN/s: F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT4G12560.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G28350 gene 0.92 4:14026577 Concanavalin A-like lectin protein kinase family protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: stem%2C cotyledon%2C leaf%2C stamen%3B EXPRESSED DURING: LP.04 four leaves visible%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Legume lectin%2C beta chain (InterPro:IPR001220)%2C Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Concanavalin A-like lectin/glucanase%2C subgroup (InterPro:IPR013320)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Concanavalin A-like lectin/glucanase (InterPro:IPR008985)%3B BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT4G04960.1)%3B Has 117572 Blast hits to 116208 proteins in 4641 species: Archae - 127%3B Bacteria - 13536%3B Metazoa - 42743%3B Fungi - 9918%3B Plants - 33874%3B Viruses - 420%3B Other Eukaryotes - 16954 (source: NCBI BLink).
AT4G27350 gene 0.92 4:13690645 Protein of unknown function (DUF1223)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1223 (InterPro:IPR010634)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1223) (TAIR:AT5G54240.1)%3B Has 527 Blast hits to 527 proteins in 230 species: Archae - 0%3B Bacteria - 439%3B Metazoa - 0%3B Fungi - 4%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 38 (source: NCBI BLink).
AT5G03380 gene 0.91 5:832035 Heavy metal transport/detoxification superfamily protein %3B FUNCTIONS IN: metal ion binding%3B INVOLVED IN: metal ion transport%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121)%3B BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT2G36950.1)%3B Has 4632 Blast hits to 3385 proteins in 434 species: Archae - 9%3B Bacteria - 451%3B Metazoa - 988%3B Fungi - 256%3B Plants - 2406%3B Viruses - 0%3B Other Eukaryotes - 522 (source: NCBI BLink).
AT4G29200 gene 0.91 4:14398054 Beta-galactosidase related protein%3B FUNCTIONS IN: hydrolase activity%2C hydrolyzing O-glycosyl compounds%3B INVOLVED IN: carbohydrate metabolic process%3B EXPRESSED IN: leaf%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 35 (InterPro:IPR001944)%3B BEST Arabidopsis thaliana protein match is: Beta-galactosidase related protein (TAIR:AT5G49250.1)%3B Has 65 Blast hits to 65 proteins in 2 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 65%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT4G19410 gene 0.91 4:10580893 Pectinacetylesterase family protein%3B FUNCTIONS IN: carboxylesterase activity%3B LOCATED IN: cell wall%2C membrane%2C plant-type cell wall%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963)%3B BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT5G45280.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
AT2G05930 gene 0.91 2:2274783 transposable element gene [Source:TAIR;Acc:AT2G05930]
AT4G29360 gene 0.91 4:14451351 O-Glycosyl hydrolases family 17 protein%3B FUNCTIONS IN: cation binding%2C hydrolase activity%2C hydrolyzing O-glycosyl compounds%2C catalytic activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: anchored to plasma membrane%2C anchored to membrane%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946)%2C Glycoside hydrolase%2C family 17 (InterPro:IPR000490)%2C Glycoside hydrolase%2C catalytic core (InterPro:IPR017853)%2C Glycoside hydrolase%2C subgroup%2C catalytic core (InterPro:IPR013781)%3B BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT5G56590.1)%3B Has 2836 Blast hits to 2784 proteins in 145 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 3%3B Fungi - 20%3B Plants - 2794%3B Viruses - 0%3B Other Eukaryotes - 13 (source: NCBI BLink).