| Trait ID (count=12) | Type | Name | Pearson's Correlation Coefficient | Position | Description | ||
|---|---|---|---|---|---|---|---|
| AT5G07090 | gene | 1.00 | 5:2202364 | Ribosomal protein S4 (RPS4A) family protein%3B FUNCTIONS IN: structural constituent of ribosome%2C protein binding%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C cytosolic ribosome%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e%2C central (InterPro:IPR013845)%2C Ribosomal protein S4e%2C N-terminal%2C conserved site (InterPro:IPR018199)%2C RNA-binding S4 (InterPro:IPR002942)%2C KOW (InterPro:IPR005824)%2C Ribosomal protein S4e%2C N-terminal (InterPro:IPR013843)%2C Ribosomal protein S4e (InterPro:IPR000876)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (RPS4A) family protein (TAIR:AT5G58420.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). | |||
| AT5G28840 | gene | GME | 0.93 | 5:10862016 | Encodes a protein with GDP-D-mannose 3'%2C5'-epimerase activity. The enzyme is involved in ascorbate biosynthesis. It catalyzes the conversion of GDP-D-mannose to GDP-L-galactose. | ||
| AT4G24830 | gene | 0.93 | 4:12792827 | arginosuccinate synthase family%3B FUNCTIONS IN: argininosuccinate synthase activity%2C ATP binding%3B INVOLVED IN: arginine biosynthetic process%3B LOCATED IN: chloroplast stroma%2C chloroplast%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Argininosuccinate synthase%2C conserved site (InterPro:IPR018223)%2C Argininosuccinate synthase (InterPro:IPR001518)%3B Has 8298 Blast hits to 8290 proteins in 2389 species: Archae - 194%3B Bacteria - 4604%3B Metazoa - 152%3B Fungi - 155%3B Plants - 73%3B Viruses - 0%3B Other Eukaryotes - 3120 (source: NCBI BLink). | |||
| AT2G46370 | gene | JAR1 | 0.93 | 2:19033586 | Encodes a jasmonate-amido synthetase that is a member of the GH3 family of proteins. JAR1 catalyzes the formation of a biologically active jasmonyl-isoleucine (JA-Ile) conjugate. JA-Ile promotes the interaction between JAZ1 and COI1 in the jasmonate signaling pathway. JAR1 localizes to the cytoplasm and is also a phytochrome A signaling component. JAR1 is an auxin-induced gene. Loss of function mutants are defective in a variety of responses to jasmonic acid. JAR1 has additional enzymatic activities in vitro%2C (e.g. the ability to synthesize adenosine 5'-tetraphosphate and other JA conjugates)%2C but there are no data to show whether JAR1 catalyzes many of these reactions in vivo. JAR1 is involved in pathogen defense%2C sensitivity to ozone%2C and wound responses. | ||
| AT5G27850 | gene | 0.93 | 5:9873067 | Ribosomal protein L18e/L15 superfamily protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic ribosome%2C cytosolic large ribosomal subunit%2C vacuole%2C large ribosomal subunit%2C membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e (InterPro:IPR000039)%2C Ribosomal protein L18e/L15 (InterPro:IPR021131)%3B BEST Arabidopsis thaliana protein match is: ribosomal protein L18 (TAIR:AT3G05590.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | |||
| AT5G47700 | gene | 0.92 | 5:19327566 | 60S acidic ribosomal protein family%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translational elongation%3B LOCATED IN: cytosol%2C cytosolic ribosome%2C ribosome%2C nucleus%2C plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813)%3B BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT4G00810.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | |||
| AT5G14030 | gene | 0.92 | 5:4526766 | translocon-associated protein beta (TRAPB) family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). | |||
| AT3G63130 | gene | RANGAP1 | 0.91 | 3:23324479 | Encodes a RAN GTPase activating protein involved in nuclear import%2C cell plate formation and mitotic spindle formation. | ||
| AT5G59850 | gene | 0.90 | 5:24112156 | Ribosomal protein S8 family protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic small ribosomal subunit%2C cell wall%2C membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630)%3B BEST Arabidopsis thaliana protein match is: ribosomal protein S15A (TAIR:AT1G07770.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | |||
| AT3G25520 | gene | ATL5 | 0.90 | 3:9269277 | Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV%2C KAN1 and KAN2. | ||
| AT1G70490 | gene | ARFA1D | 0.90 | 1:26563718 | A member of ARF GTPase family. A thaliana has 21 members of this family%2C known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division%2C cell expansion and cellulose production using antisense construct. | ||
| AT4G18100 | gene | 0.90 | 4:10035468 | Ribosomal protein L32e%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%2C ribosome biogenesis%3B LOCATED IN: cytosolic ribosome%2C ribosome%2C cytosolic large ribosomal subunit%2C nucleolus%3B EXPRESSED IN: callus%2C pollen tube%2C leaf%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L32e (InterPro:IPR001515)%2C Ribosomal protein L32e%2C conserved site (InterPro:IPR018263)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein L32e (TAIR:AT5G46430.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | |||
| GO | domain | Definition | P-value |
|---|---|---|---|
| cytosolic ribosome | cellular_component | "A ribosome located in the cytosol." [GOC:mtg_sensu] | 1.26e-08 |
| structural constituent of ribosome | molecular_function | "The action of a molecule that contributes to the structural integrity of the ribosome." [GOC:mah] | 2.66e-07 |
| ribosome | cellular_component | "An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins." [ISBN:0198506732] | 2.66e-07 |
| intracellular | cellular_component | "The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." [ISBN:0198506732] | 1.19e-06 |
| peptide biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. This may include the translation of a precursor protein and its subsequent processing into a functional peptide." [CHEBI:16670, GOC:dph, GOC:jl] | 6.28e-06 |
| translation | biological_process | "The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome." [GOC:go_curators] | 7.28e-06 |
| cytosolic large ribosomal subunit | cellular_component | "The large subunit of a ribosome located in the cytosol." [GOC:mtg_sensu] | 2.89e-04 |
| cellular biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells." [GOC:jl] | 3.02e-04 |
| cytosol | cellular_component | "The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes." [GOC:hgd, GOC:jl] | 3.49e-04 |
| biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones." [GOC:curators, ISBN:0198547684] | 3.93e-04 |
| cellular protein metabolic process | biological_process | "The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification." [GOC:jl] | 1.46e-03 |
| macromolecule biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [CHEBI:33694, GOC:mah] | 2.89e-03 |
| protein metabolic process | biological_process | "The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification." [GOC:ma] | 2.89e-03 |
| nitrogen compound metabolic process | biological_process | "The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium." [CHEBI:51143, GOC:go_curators, GOC:jl, ISBN:0198506732] | 3.62e-03 |
| vacuolar membrane | cellular_component | "The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell." [GOC:ai] | 1.11e-02 |
| vacuole | cellular_component | "A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol." [GOC:mtg_sensu, ISBN:0198506732] | 1.48e-02 |
| systemic acquired resistance | biological_process | "The salicylic acid mediated response to a pathogen which confers broad spectrum resistance." [GOC:lr, ISBN:052143641] | 1.65e-02 |
| nucleocytoplasmic transport | biological_process | "The directed movement of molecules between the nucleus and the cytoplasm." [GOC:go_curators] | 1.83e-02 |
| plasma membrane | cellular_component | "The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins." [ISBN:0716731363] | 1.98e-02 |