|
copper ion binding
|
molecular_function
|
"Interacting selectively and non-covalently with copper (Cu) ions." [GOC:ai]
|
6.90e-05
|
|
response to stimulus
|
biological_process
|
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." [GOC:ai, GOC:bf]
|
6.90e-05
|
|
gluconeogenesis
|
biological_process
|
"The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol." [MetaCyc:GLUCONEO-PWY]
|
2.77e-04
|
|
chloroplast
|
cellular_component
|
"A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma." [ISBN:0471245208]
|
2.77e-04
|
|
chloroplast stroma
|
cellular_component
|
"The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis." [ISBN:0198547684]
|
2.59e-03
|
|
response to karrikin
|
biological_process
|
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants)." [PMID:20351290]
|
4.77e-03
|
|
response to cadmium ion
|
biological_process
|
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus." [GOC:ai]
|
5.60e-03
|
|
defense response, incompatible interaction
|
biological_process
|
"A response of a plant to a pathogenic agent that prevents the occurrence or spread of disease." [GOC:lr]
|
8.66e-03
|
|
cell wall
|
cellular_component
|
"The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins." [GOC:giardia, http://en.wikipedia.org/wiki/Microbial_cyst, ISBN:0198547684, PMID:15134259]
|
9.23e-03
|
|
mitochondrion
|
cellular_component
|
"A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration." [GOC:giardia, ISBN:0198506732]
|
9.23e-03
|
|
vacuolar membrane
|
cellular_component
|
"The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell." [GOC:ai]
|
9.23e-03
|
|
NADP metabolic process
|
biological_process
|
"The chemical reactions and pathways involving nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; metabolism may be of either the oxidized form, NADP, or the reduced form, NADPH." [GOC:mah]
|
9.23e-03
|
|
response to osmotic stress
|
biological_process
|
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell." [GOC:jl]
|
9.23e-03
|
|
transaminase activity
|
molecular_function
|
"Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid." [ISBN:0198506732]
|
9.23e-03
|
|
plant-type cell wall
|
cellular_component
|
"A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances." [ISBN:0471245208]
|
9.23e-03
|
|
response to biotic stimulus
|
biological_process
|
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism." [GOC:hb]
|
9.23e-03
|
|
response to salt stress
|
biological_process
|
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment." [GOC:jl]
|
9.23e-03
|
|
jasmonic acid biosynthetic process
|
biological_process
|
"The chemical reactions and pathways resulting in the formation of jasmonic acid, a fatty acid derivative." [ISBN:0387969845]
|
9.23e-03
|
|
response to hormone
|
biological_process
|
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus." [GOC:jl]
|
9.23e-03
|
|
response to cytokinin
|
biological_process
|
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus." [GOC:jl]
|
9.23e-03
|
|
brassinosteroid mediated signaling pathway
|
biological_process
|
"A series of molecular signals mediated by the detection of brassinosteroid." [GOC:sm]
|
9.23e-03
|
|
response to metal ion
|
biological_process
|
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus." [GOC:sm]
|
9.23e-03
|
|
response to external biotic stimulus
|
biological_process
|
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external biotic stimulus, an external stimulus caused by, or produced by living things." [GOC:go_curators]
|
9.23e-03
|
|
glucose 6-phosphate metabolic process
|
biological_process
|
"The chemical reactions and pathways involving glucose 6-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-6." [GOC:ai]
|
9.23e-03
|
|
response to other organism
|
biological_process
|
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism." [GOC:ai]
|
9.23e-03
|
|
cellular response to brassinosteroid stimulus
|
biological_process
|
"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brassinosteroid stimulus." [GOC:mah]
|
9.23e-03
|
|
small molecule biosynthetic process
|
biological_process
|
"The chemical reactions and pathways resulting in the formation of small molecules, any low molecular weight, monomeric, non-encoded molecule." [GOC:curators, GOC:pde, GOC:vw]
|
1.07e-02
|
|
response to stress
|
biological_process
|
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation)." [GOC:mah]
|
1.24e-02
|
|
nucleoside phosphate metabolic process
|
biological_process
|
"The chemical reactions and pathways involving any phosphorylated nucleoside." [GOC:mah]
|
1.39e-02
|
|
nucleotide metabolic process
|
biological_process
|
"The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates)." [GOC:ma]
|
1.39e-02
|
|
response to abiotic stimulus
|
biological_process
|
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus." [GOC:hb]
|
1.39e-02
|
|
cellular aldehyde metabolic process
|
biological_process
|
"The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells." [GOC:go_curators, ISBN:0198506732]
|
1.49e-02
|
|
systemic acquired resistance, salicylic acid mediated signaling pathway
|
biological_process
|
"The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance." [GOC:jy]
|
1.49e-02
|
|
pentose-phosphate shunt
|
biological_process
|
"The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses." [ISBN:0198506732, MetaCyc:PENTOSE-P-PWY]
|
1.83e-02
|
|
response to brassinosteroid
|
biological_process
|
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brassinosteroid stimulus." [GOC:jl]
|
1.92e-02
|
|
defense response to other organism
|
biological_process
|
"Reactions triggered in response to the presence of another organism that act to protect the cell or organism from damage caused by that organism." [GOC:dos]
|
2.04e-02
|
|
response to bacterium
|
biological_process
|
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium." [GOC:hb]
|
2.49e-02
|
|
pyridoxal phosphate binding
|
molecular_function
|
"Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6." [GOC:mah, ISBN:0198506732]
|
2.49e-02
|
|
oxidoreduction coenzyme metabolic process
|
biological_process
|
"The chemical reactions and pathways involving coenzymes that are required, in addition to an enzyme and a substrate, for an oxidoreductase reaction to proceed." [GOC:mah]
|
2.64e-02
|
|
systemic acquired resistance
|
biological_process
|
"The salicylic acid mediated response to a pathogen which confers broad spectrum resistance." [GOC:lr, ISBN:052143641]
|
3.42e-02
|
|
chloroplast envelope
|
cellular_component
|
"The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space." [GOC:tb]
|
3.42e-02
|
|
carboxylic acid metabolic process
|
biological_process
|
"The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-)." [ISBN:0198506732]
|
3.42e-02
|
|
aspartic-type endopeptidase activity
|
molecular_function
|
"Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile." [ISBN:0198506732]
|
3.47e-02
|
|
purine ribonucleotide metabolic process
|
biological_process
|
"The chemical reactions and pathways involving a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." [GOC:go_curators, ISBN:0198506732]
|
3.83e-02
|
|
fatty acid biosynthetic process
|
biological_process
|
"The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes." [GOC:mah, ISBN:0198506732]
|
4.15e-02
|
|
vacuole
|
cellular_component
|
"A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol." [GOC:mtg_sensu, ISBN:0198506732]
|
4.24e-02
|
|
purine nucleotide metabolic process
|
biological_process
|
"The chemical reactions and pathways involving a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." [GOC:go_curators, ISBN:0198506732]
|
4.24e-02
|
|
ribonucleotide metabolic process
|
biological_process
|
"The chemical reactions and pathways involving a ribonucleotide, a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." [GOC:go_curators, ISBN:0198506732]
|
4.24e-02
|
|
cell communication
|
biological_process
|
"Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." [GOC:mah]
|
4.45e-02
|
|
carbohydrate metabolic process
|
biological_process
|
"The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule." [GOC:mah, ISBN:0198506732]
|
4.79e-02
|