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Show all genes, phenotypes and metabolites for which the QTL profile correlates with that of the query profile above the set cut-off, the query trait is in the first row. Strongly correlating QTL profiles could indicate common regulation.
Trait ID (count=18) Type Name Pearson's Correlation Coefficient Position Description
AT1G09815 gene POLD4 1.00 1:3189301 polymerase delta 4 (POLD4)%3B FUNCTIONS IN: DNA-directed DNA polymerase activity%3B INVOLVED IN: DNA replication%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA polymerase delta%2C subunit 4 (InterPro:IPR007218)%3B Has 212 Blast hits to 212 proteins in 91 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 52%3B Fungi - 86%3B Plants - 65%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).
AT1G08350 gene 0.95 1:2632810 Endomembrane protein 70 protein family%3B CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240)%3B BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1)%3B Has 1520 Blast hits to 1507 proteins in 318 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 602%3B Fungi - 224%3B Plants - 440%3B Viruses - 0%3B Other Eukaryotes - 251 (source: NCBI BLink).
AT1G05720 gene 0.94 1:1717389 selenoprotein family protein%3B FUNCTIONS IN: selenium binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Sep15/SelM redox (InterPro:IPR014912)%3B Has 200 Blast hits to 200 proteins in 73 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 137%3B Fungi - 0%3B Plants - 49%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink).
AT1G59860 gene 0.92 1:22031343 HSP20-like chaperones superfamily protein%3B CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068)%2C HSP20-like chaperone (InterPro:IPR008978)%3B BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G07400.1)%3B Has 7002 Blast hits to 7001 proteins in 1594 species: Archae - 206%3B Bacteria - 4112%3B Metazoa - 148%3B Fungi - 313%3B Plants - 1631%3B Viruses - 0%3B Other Eukaryotes - 592 (source: NCBI BLink).
AT1G04000 gene 0.92 1:1027853 unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1)%3B Has 62 Blast hits to 62 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 62%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G04260 gene MPI7 0.92 1:1140278 Encodes protein that interacts with CaMV movement protein. Colocalizes in the cytoplasm with the movement protein. Has similarity to mammalian proteins (such as the rat PRA1) which have been described as rab acceptors.
AT1G06890 gene 0.92 1:2111323 Nucleotide/sugar transporter family protein
AT1G06700 gene 0.92 1:2052370 Protein kinase superfamily protein%3B FUNCTIONS IN: protein tyrosine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C active site (InterPro:IPR008266)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G30740.1)%3B Has 112305 Blast hits to 111003 proteins in 4429 species: Archae - 103%3B Bacteria - 13312%3B Metazoa - 41447%3B Fungi - 9236%3B Plants - 31753%3B Viruses - 344%3B Other Eukaryotes - 16110 (source: NCBI BLink).
AT1G03980 gene PCS2 0.91 1:1019311 Encodes a protein with phytochelatin synthase activity which binds Cd2+ and Cd-glutathione complexes with high affinity. The protein has been postulated to be involved in Cd2+ tolerance. AtPCS2 expression appears to be less than that of AtPCS1%2C explaining the inability of endogenous AtPCS2 to substitute for AtPCS1 in the cad1-3 mutant (AtPCS1 null).
AT1G05540 gene 0.91 1:1639223 Protein of unknown function (DUF295)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G30160.2)%3B Has 218 Blast hits to 208 proteins in 3 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 218%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
AT1G07410 gene RABA2b 0.91 1:2276030 RAB GTPase homolog A2B (RABA2b)%3B FUNCTIONS IN: GTP binding%2C GTPase activity%3B INVOLVED IN: intracellular protein transport%2C signal transduction%2C nucleocytoplasmic transport%2C protein transport%2C small GTPase mediated signal transduction%3B LOCATED IN: endosome%2C plasma membrane%2C cell plate%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041)%2C ADP-ribosylation factor (InterPro:IPR006688)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Ras type (InterPro:IPR003577)%2C Rab11-related (InterPro:IPR015595)%2C Small GTPase%2C Rho type (InterPro:IPR003578)%2C Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A2D (TAIR:AT5G59150.1)%3B Has 28965 Blast hits to 28914 proteins in 772 species: Archae - 29%3B Bacteria - 152%3B Metazoa - 15139%3B Fungi - 4328%3B Plants - 3313%3B Viruses - 20%3B Other Eukaryotes - 5984 (source: NCBI BLink).
AT1G06740 gene MUG3 0.91 1:2070737 Encodes a member of a domesticated transposable element gene family MUSTANG. Members of this family are derived from transposable elements genes but gained function in plant fitness and flower development. Known members include: AT3G04605 (MUG1)%2C AT2G30640 (MUG2)%2C AT1G06740 (MUG3)%2C AT5G16505 (MUG4)%2C AT3G06940 (MUG5)%2C AT5G48965 (MUG6)%2C AT3G05850 (MUG7) and AT5G34853 (MUG8).
AT1G07750 gene 0.91 1:2403992 RmlC-like cupins superfamily protein%3B FUNCTIONS IN: copper ion binding%2C zinc ion binding%2C nutrient reservoir activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C 11-S seed storage protein%2C plant (InterPro:IPR006044)%3B BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT2G28680.1)%3B Has 920 Blast hits to 832 proteins in 102 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 3%3B Fungi - 0%3B Plants - 914%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink).
AT1G02260 gene 0.91 1:440200 Divalent ion symporter%3B FUNCTIONS IN: citrate transmembrane transporter activity%2C transporter activity%3B INVOLVED IN: citrate transport%2C transmembrane transport%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Divalent ion symporter (InterPro:IPR004680)%3B Has 9789 Blast hits to 6672 proteins in 1812 species: Archae - 302%3B Bacteria - 8135%3B Metazoa - 259%3B Fungi - 87%3B Plants - 203%3B Viruses - 2%3B Other Eukaryotes - 801 (source: NCBI BLink).
AT1G08770 gene PRA1.E 0.90 1:2808760 prenylated RAB acceptor 1.E (PRA1.E)%3B CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895)%3B BEST Arabidopsis thaliana protein match is: PRA1 (Prenylated rab acceptor) family protein (TAIR:AT1G55190.1)%3B Has 522 Blast hits to 522 proteins in 132 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 107%3B Fungi - 87%3B Plants - 296%3B Viruses - 0%3B Other Eukaryotes - 32 (source: NCBI BLink).
AT1G06730 gene 0.90 1:2067509 pfkB-like carbohydrate kinase family protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: D-ribose catabolic process%3B LOCATED IN: nucleus%2C cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611)%3B BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT3G59480.1)%3B Has 14630 Blast hits to 14623 proteins in 2218 species: Archae - 286%3B Bacteria - 12051%3B Metazoa - 104%3B Fungi - 33%3B Plants - 346%3B Viruses - 0%3B Other Eukaryotes - 1810 (source: NCBI BLink).
AT1G08640 gene CJD1 0.90 1:2748361 Encodes a choloroplast membrane protein CJD1 (Chloroplast J-like Domain 1). Predicted to contain a transit peptide%2C three transmembrane domains and an N-terminal J-like domain. Influences fatty acid composition of chloroplast lipids.
AT1G08900 gene 0.90 1:2852363 Major facilitator superfamily protein%3B FUNCTIONS IN: carbohydrate transmembrane transporter activity%3B INVOLVED IN: transport%2C transmembrane transport%3B LOCATED IN: integral to membrane%2C membrane%3B CONTAINS InterPro DOMAIN/s: Sugar transporter%2C conserved site (InterPro:IPR005829)%2C Major facilitator superfamily (InterPro:IPR020846)%2C General substrate transporter (InterPro:IPR005828)%2C Sugar/inositol transporter (InterPro:IPR003663)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08890.1)%3B Has 23143 Blast hits to 22654 proteins in 1781 species: Archae - 437%3B Bacteria - 7818%3B Metazoa - 5011%3B Fungi - 6239%3B Plants - 2470%3B Viruses - 0%3B Other Eukaryotes - 1168 (source: NCBI BLink).
GO domain Definition P-value
endosome membrane cellular_component "The lipid bilayer surrounding an endosome." [GOC:mah] 1.12e-05