| Trait ID (count=49) | Type | Name | Pearson's Correlation Coefficient | Position | Description | ||
|---|---|---|---|---|---|---|---|
| AT1G14380 | gene | IQD28 | 1.00 | 1:4918010 | Encodes a microtubule-associated protein. | ||
| AT3G02530 | gene | 0.94 | 3:528526 | TCP-1/cpn60 chaperonin family protein%3B FUNCTIONS IN: unfolded protein binding%2C ATP binding%3B INVOLVED IN: response to cadmium ion%2C response to zinc ion%3B LOCATED IN: membrane%2C cytoplasm%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423)%2C Chaperone%2C tailless complex polypeptide 1 (InterPro:IPR017998)%2C T-complex protein 1%2C zeta subunit (InterPro:IPR012722)%2C Chaperonin TCP-1%2C conserved site (InterPro:IPR002194)%3B BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT5G16070.1)%3B Has 18475 Blast hits to 17833 proteins in 3650 species: Archae - 805%3B Bacteria - 8777%3B Metazoa - 2106%3B Fungi - 1471%3B Plants - 861%3B Viruses - 0%3B Other Eukaryotes - 4455 (source: NCBI BLink). | |||
| AT5G51280 | gene | 0.94 | 5:20841239 | DEAD-box protein abstrakt%2C putative%3B FUNCTIONS IN: helicase activity%2C zinc ion binding%2C ATP-dependent helicase activity%2C nucleic acid binding%2C ATP binding%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA helicase%2C DEAD-box type%2C Q motif (InterPro:IPR014014)%2C DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT4G33370.1)%3B Has 46358 Blast hits to 45535 proteins in 3129 species: Archae - 906%3B Bacteria - 23651%3B Metazoa - 6388%3B Fungi - 4930%3B Plants - 2690%3B Viruses - 10%3B Other Eukaryotes - 7783 (source: NCBI BLink). | |||
| AT4G05420 | gene | DDB1A | 0.94 | 4:2746114 | Structurally similar to damaged DNA binding proteins. DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis. DDB1a is shown to be RUB-modified. | ||
| AT1G80930 | gene | 0.94 | 1:30405339 | MIF4G domain-containing protein / MA3 domain-containing protein%3B FUNCTIONS IN: RNA binding%2C binding%3B INVOLVED IN: translation%2C RNA metabolic process%3B LOCATED IN: cytosol%2C nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma%2C MA3 (InterPro:IPR003891)%2C Armadillo-type fold (InterPro:IPR016024)%2C MIF4G-like%2C type 3 (InterPro:IPR003890)%2C MIF4-like%2C type 1/2/3 (InterPro:IPR016021)%3B BEST Arabidopsis thaliana protein match is: Initiation factor eIF-4 gamma%2C MA3 (TAIR:AT1G52325.1)%3B Has 51676 Blast hits to 28577 proteins in 1484 species: Archae - 86%3B Bacteria - 5039%3B Metazoa - 22313%3B Fungi - 6500%3B Plants - 3817%3B Viruses - 357%3B Other Eukaryotes - 13564 (source: NCBI BLink). | |||
| AT3G07140 | gene | 0.94 | 3:2261104 | GPI transamidase component Gpi16 subunit family protein%3B FUNCTIONS IN: GPI-anchor transamidase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endoplasmic reticulum%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Gpi16 subunit%2C GPI transamidase component (InterPro:IPR007245)%3B Has 383 Blast hits to 363 proteins in 146 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 164%3B Fungi - 131%3B Plants - 68%3B Viruses - 0%3B Other Eukaryotes - 20 (source: NCBI BLink). | |||
| AT5G20600 | gene | 0.93 | 5:6966178 | FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: rRNA processing%3B LOCATED IN: preribosome%2C small subunit precursor%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleolar%2C Nop52 (InterPro:IPR010301)%3B Has 543 Blast hits to 530 proteins in 201 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 211%3B Fungi - 164%3B Plants - 46%3B Viruses - 0%3B Other Eukaryotes - 112 (source: NCBI BLink). | |||
| AT3G60350 | gene | ARABIDILLO-2 | 0.93 | 3:22306488 | ARABIDILLO-2 and its homolog%2C ARABIDILLO -1%2C are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-2 promote lateral root development. Mutant plants form fewer lateral roots%2C while ARABIDILLO-2-overexpressing lines produce more lateral roots than wild-type seedlings. | ||
| AT4G02720 | gene | 0.93 | 4:1204089 | unknown protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF926 (InterPro:IPR009269)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). | |||
| AT3G21290 | gene | 0.93 | 3:7482106 | dentin sialophosphoprotein-related%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Occludin/RNA polymerase II elongation factor%2C ELL domain (InterPro:IPR010844)%3B Has 17175 Blast hits to 8691 proteins in 788 species: Archae - 88%3B Bacteria - 6651%3B Metazoa - 4182%3B Fungi - 1520%3B Plants - 456%3B Viruses - 109%3B Other Eukaryotes - 4169 (source: NCBI BLink). | |||
| AT5G27740 | gene | EMB2775 | 0.92 | 5:9823513 | A locus involved in embryogenesis. Mutations in this locus result in embryo lethality. | ||
| AT3G30300 | gene | 0.92 | 3:11921096 | O-fucosyltransferase family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378)%3B BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT3G03810.1)%3B Has 982 Blast hits to 802 proteins in 27 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 982%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). | |||
| AT4G39570 | gene | 0.92 | 4:18384000 | Galactose oxidase/kelch repeat superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C Galactose oxidase/kelch%2C beta-propeller (InterPro:IPR011043)%2C Kelch repeat type 1 (InterPro:IPR006652)%2C Kelch related (InterPro:IPR013089)%2C Kelch-type beta propeller (InterPro:IPR015915)%3B BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39550.1)%3B Has 1480 Blast hits to 1434 proteins in 111 species: Archae - 2%3B Bacteria - 64%3B Metazoa - 242%3B Fungi - 0%3B Plants - 1114%3B Viruses - 19%3B Other Eukaryotes - 39 (source: NCBI BLink). | |||
| AT1G55350 | gene | DEK1 | 0.92 | 1:20653740 | Similar to maize DEK1%2C a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway. It localizes to membranes and undergoes intramolecular autolytic cleavage events that release the calpain domain into the cytoplasm. | ||
| AT5G26707 | gene | None | 0.92 | None:None | None | ||
| AT3G54980 | gene | 0.92 | 3:20370205 | Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: LATERAL ORGAN JUNCTION (TAIR:AT2G39230.1)%3B Has 66577 Blast hits to 14412 proteins in 313 species: Archae - 5%3B Bacteria - 80%3B Metazoa - 1084%3B Fungi - 1336%3B Plants - 61678%3B Viruses - 0%3B Other Eukaryotes - 2394 (source: NCBI BLink). | |||
| AT1G72650 | gene | TRFL6 | 0.92 | 1:27349393 | Arabidopsis thaliana myb family transcription factor (At1g72650) | ||
| AT1G03910 | gene | 0.92 | 1:996076 | Encodes the Arabidopsis homolog of a conserved eukaryotic protein without known functional domains. The protein that localizes to nuclear speckles and colocalizes with known splicing proteins. | |||
| AT1G54270 | gene | EIF4A-2 | 0.92 | 1:20259547 | member of eIF4A - eukaryotic initiation factor 4A | ||
| AT3G59990 | gene | MAP2B | 0.92 | 3:22155705 | Encodes a MAP2 like methionine aminopeptidase | ||
| AT1G30290 | gene | 0.92 | 1:10670129 | unknown protein | |||
| AT1G15810 | gene | 0.92 | 1:5444220 | S15/NS1%2C RNA-binding protein%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: small ribosomal subunit%2C ribosome%2C intracellular%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S15 (InterPro:IPR000589)%2C Ribosomal protein S15%2C bacterial-type (InterPro:IPR005290)%2C S15/NS1%2C RNA-binding (InterPro:IPR009068)%3B BEST Arabidopsis thaliana protein match is: S15/NS1%2C RNA-binding protein (TAIR:AT1G80620.1)%3B Has 8219 Blast hits to 8219 proteins in 2793 species: Archae - 0%3B Bacteria - 5437%3B Metazoa - 107%3B Fungi - 123%3B Plants - 505%3B Viruses - 0%3B Other Eukaryotes - 2047 (source: NCBI BLink). | |||
| AT2G20190 | gene | CLASP | 0.92 | 2:8711579 | Encodes a microtubule-associated protein that is involved in both cell division and cell expansion. It likely promotes microtubule stability. | ||
| AT4G39280 | gene | 0.92 | 4:18280098 | phenylalanyl-tRNA synthetase%2C putative / phenylalanine--tRNA ligase%2C putative%3B FUNCTIONS IN: phenylalanine-tRNA ligase activity%2C tRNA binding%2C aminoacyl-tRNA ligase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: phenylalanyl-tRNA aminoacylation%2C tRNA aminoacylation%2C translation%2C tRNA aminoacylation for protein translation%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Phenylalanyl-tRNA synthetase%2C class IIc%2C alpha subunit (InterPro:IPR004529)%2C Phenylalanyl-tRNA synthetase alpha chain (InterPro:IPR002319)%2C Aminoacyl-tRNA synthetase%2C class II%2C conserved domain (InterPro:IPR006195)%3B BEST Arabidopsis thaliana protein match is: phenylalanyl-tRNA synthetase class IIc family protein (TAIR:AT3G58140.1)%3B Has 10138 Blast hits to 10129 proteins in 3092 species: Archae - 343%3B Bacteria - 6159%3B Metazoa - 288%3B Fungi - 276%3B Plants - 100%3B Viruses - 0%3B Other Eukaryotes - 2972 (source: NCBI BLink). | |||
| AT5G04100 | gene | None | 0.91 | None:None | None | ||
| AT4G32360 | gene | 0.91 | 4:15621075 | Pyridine nucleotide-disulphide oxidoreductase family protein%3B FUNCTIONS IN: electron carrier activity%2C binding%2C catalytic activity%3B INVOLVED IN: metabolic process%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027)%2C Adrenodoxin reductase (InterPro:IPR000759)%2C NAD(P)-binding domain (InterPro:IPR016040)%3B BEST Arabidopsis thaliana protein match is: NADH-dependent glutamate synthase 1 (TAIR:AT5G53460.3)%3B Has 9342 Blast hits to 9327 proteins in 2028 species: Archae - 136%3B Bacteria - 6683%3B Metazoa - 218%3B Fungi - 274%3B Plants - 105%3B Viruses - 0%3B Other Eukaryotes - 1926 (source: NCBI BLink). | |||
| AT3G62360 | gene | 0.91 | 3:23072746 | Carbohydrate-binding-like fold%3B FUNCTIONS IN: carbohydrate binding%3B LOCATED IN: endoplasmic reticulum%2C plasma membrane%2C plant-type cell wall%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Carbohydrate-binding-like fold (InterPro:IPR013784)%3B Has 321 Blast hits to 256 proteins in 98 species: Archae - 6%3B Bacteria - 117%3B Metazoa - 138%3B Fungi - 0%3B Plants - 33%3B Viruses - 0%3B Other Eukaryotes - 27 (source: NCBI BLink). | |||
| AT3G53110 | gene | LOS4 | 0.91 | 3:19687740 | Encodes a putative DEAD-Box RNA Helicase and has RNA-dependent ATPase activity. Mutant is Sensitive to chilling stress and heat stress. Germination of the mutant is inhibited by ABA. LOS4 may be involved in temperature sensing. Is enriched in the nuclear envelope and also located in the cytoplasm. LOS4 is involved in export of poly A RNA. | ||
| AT1G78650 | gene | POLD3 | 0.91 | 1:29582907 | Similar to DNA polymerase delta (POLD3)%2C which in other organism was shown to be involved in the elongation of DNA replication. | ||
| AT4G31160 | gene | DCAF1 | 0.91 | 4:15145628 | Encodes a DCAF/DWD protein capable of interacting with DDB1 and associating with CUL4%2C likely as part of a nuclear ubiquitin ligase complex. DCAF1 appears to be required for plant embryogenesis and to affect several other developmental processes including leaf%2C shoot%2C and flower development. | ||
| AT3G13860 | gene | HSP60-3A | 0.91 | 3:4561517 | heat shock protein 60-3A (HSP60-3A)%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: response to cadmium ion%3B LOCATED IN: mitochondrion%2C plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423)%2C Chaperonin Cpn60%2C conserved site (InterPro:IPR018370)%2C Chaperonin Cpn60 (InterPro:IPR001844)%3B BEST Arabidopsis thaliana protein match is: heat shock protein 60 (TAIR:AT3G23990.1)%3B Has 33806 Blast hits to 33780 proteins in 8724 species: Archae - 691%3B Bacteria - 21872%3B Metazoa - 1598%3B Fungi - 1587%3B Plants - 751%3B Viruses - 2%3B Other Eukaryotes - 7305 (source: NCBI BLink). | ||
| AT4G09630 | gene | 0.91 | 4:6083585 | Protein of unknown function (DUF616)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT1G34550.1)%3B Has 3181 Blast hits to 2512 proteins in 288 species: Archae - 26%3B Bacteria - 157%3B Metazoa - 687%3B Fungi - 206%3B Plants - 314%3B Viruses - 69%3B Other Eukaryotes - 1722 (source: NCBI BLink). | |||
| AT2G40430 | gene | 0.91 | 2:16878901 | CONTAINS InterPro DOMAIN/s: P60-like (InterPro:IPR011687)%2C Tumour suppressor protein Gltscr2 (InterPro:IPR011211)%3B Has 709 Blast hits to 643 proteins in 201 species: Archae - 0%3B Bacteria - 32%3B Metazoa - 224%3B Fungi - 154%3B Plants - 45%3B Viruses - 0%3B Other Eukaryotes - 254 (source: NCBI BLink). | |||
| AT5G60100 | gene | PRR3 | 0.91 | 5:24197971 | Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods%2C based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL. | ||
| AT5G57020 | gene | NMT1 | 0.91 | 5:23074867 | Arabidopsis thaliana myristoyl-CoA:protein N-myristoyltransferase. | ||
| AT5G20890 | gene | 0.91 | 5:7086653 | TCP-1/cpn60 chaperonin family protein%3B FUNCTIONS IN: unfolded protein binding%2C ATP binding%3B INVOLVED IN: protein folding%2C cellular protein metabolic process%3B LOCATED IN: anchored to plasma membrane%2C cell wall%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423)%2C Chaperone%2C tailless complex polypeptide 1 (InterPro:IPR017998)%2C T-complex protein 1%2C beta subunit (InterPro:IPR012716)%2C Chaperonin TCP-1%2C conserved site (InterPro:IPR002194)%3B BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1)%3B Has 19831 Blast hits to 19435 proteins in 3922 species: Archae - 807%3B Bacteria - 9602%3B Metazoa - 2181%3B Fungi - 1427%3B Plants - 861%3B Viruses - 0%3B Other Eukaryotes - 4953 (source: NCBI BLink). | |||
| AT4G32620 | gene | 0.90 | 4:15731443 | Enhancer of polycomb-like transcription factor protein%3B FUNCTIONS IN: nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Tudor domain (InterPro:IPR002999)%2C Enhancer of polycomb-like (InterPro:IPR019542)%3B BEST Arabidopsis thaliana protein match is: Enhancer of polycomb-like transcription factor protein (TAIR:AT5G04670.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). | |||
| AT4G21100 | gene | DDB1B | 0.90 | 4:11258759 | One of two closely related genes similar to a damaged DNA binding protein originally described in mammals. May form a complex with DET1 to regulate photomorphogenesis. Loss of function mutations are lethal. The DDB1b protein binds with a number of DWD-containing proteins and may form part of a CUL4-based E3 ubiquitin ligase. | ||
| AT3G62120 | gene | 0.90 | 3:23001030 | Class II aaRS and biotin synthetases superfamily protein%3B FUNCTIONS IN: proline-tRNA ligase activity%2C aminoacyl-tRNA ligase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: prolyl-tRNA aminoacylation%2C translation%2C tRNA aminoacylation for protein translation%3B LOCATED IN: membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (InterPro:IPR002314)%2C Prolyl-tRNA synthetase%2C class IIa%2C prokaryotic-type (InterPro:IPR004499)%2C Prolyl-tRNA synthetase%2C class II%2C C-terminal (InterPro:IPR016061)%2C Anticodon-binding (InterPro:IPR004154)%2C Prolyl-tRNA synthetase%2C class II (InterPro:IPR017449)%2C Prolyl-tRNA synthetase%2C class IIa%2C conserved region (InterPro:IPR002316)%2C Aminoacyl-tRNA synthetase%2C class II%2C conserved domain (InterPro:IPR006195)%3B BEST Arabidopsis thaliana protein match is: Class II aaRS and biotin synthetases superfamily protein (TAIR:AT5G52520.1)%3B Has 9240 Blast hits to 8990 proteins in 2633 species: Archae - 270%3B Bacteria - 6522%3B Metazoa - 295%3B Fungi - 194%3B Plants - 105%3B Viruses - 0%3B Other Eukaryotes - 1854 (source: NCBI BLink). | |||
| AT2G03220 | gene | FT1 | 0.90 | 2:970245 | member of Glycosyltransferase Family- 37 | ||
| AT5G10630 | gene | 0.90 | 5:3359832 | Translation elongation factor EF1A/initiation factor IF2gamma family protein%3B FUNCTIONS IN: GTP binding%2C translation elongation factor activity%2C GTPase activity%2C zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: intracellular%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A%2C C-terminal (InterPro:IPR004160)%2C Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (InterPro:IPR009001)%2C Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Zinc finger%2C RanBP2-type (InterPro:IPR001876)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%3B BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1A/initiation factor IF2gamma family protein (TAIR:AT1G18070.2)%3B Has 86905 Blast hits to 86827 proteins in 18414 species: Archae - 1008%3B Bacteria - 36763%3B Metazoa - 20627%3B Fungi - 12842%3B Plants - 2029%3B Viruses - 6%3B Other Eukaryotes - 13630 (source: NCBI BLink). | |||
| AT3G26560 | gene | 0.90 | 3:9749493 | ATP-dependent RNA helicase%2C putative%3B FUNCTIONS IN: in 6 functions%3B LOCATED IN: cytosol%2C mitochondrion%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502)%2C DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Domain of unknown function DUF1605 (InterPro:IPR011709)%2C Ribosomal protein S1%2C RNA-binding domain (InterPro:IPR003029)%2C Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site (InterPro:IPR002464)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT1G32490.2)%3B Has 53052 Blast hits to 35825 proteins in 3176 species: Archae - 195%3B Bacteria - 13845%3B Metazoa - 17201%3B Fungi - 5520%3B Plants - 3365%3B Viruses - 1203%3B Other Eukaryotes - 11723 (source: NCBI BLink). | |||
| AT4G29680 | gene | 0.90 | 4:14537638 | Alkaline-phosphatase-like family protein%3B FUNCTIONS IN: hydrolase activity%2C catalytic activity%3B INVOLVED IN: metabolic process%2C nucleotide metabolic process%3B LOCATED IN: vacuole%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like%2C alpha/beta/alpha (InterPro:IPR017849)%2C Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591)%2C Alkaline-phosphatase-like%2C core domain (InterPro:IPR017850)%3B BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT4G29690.1)%3B Has 2446 Blast hits to 2426 proteins in 629 species: Archae - 13%3B Bacteria - 1090%3B Metazoa - 671%3B Fungi - 207%3B Plants - 107%3B Viruses - 6%3B Other Eukaryotes - 352 (source: NCBI BLink). | |||
| AT2G40660 | gene | 0.90 | 2:16965909 | Nucleic acid-binding%2C OB-fold-like protein%3B FUNCTIONS IN: tRNA binding%3B INVOLVED IN: tRNA aminoacylation for protein translation%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C tRNA-binding domain (InterPro:IPR002547)%3B BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase%2C putative / methionyl-tRNA synthetase%2C putative / MetRS%2C putative (TAIR:AT4G13780.1)%3B Has 6072 Blast hits to 6060 proteins in 2115 species: Archae - 244%3B Bacteria - 4267%3B Metazoa - 483%3B Fungi - 217%3B Plants - 163%3B Viruses - 1%3B Other Eukaryotes - 697 (source: NCBI BLink). | |||
| AT5G60160 | gene | 0.90 | 5:24223647 | Zn-dependent exopeptidases superfamily protein%3B FUNCTIONS IN: aminopeptidase activity%2C zinc ion binding%3B INVOLVED IN: response to cadmium ion%2C proteolysis%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase M18%2C aminopeptidase I (InterPro:IPR001948)%3B BEST Arabidopsis thaliana protein match is: Zn-dependent exopeptidases superfamily protein (TAIR:AT5G04710.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | |||
| AT3G49880 | gene | 0.90 | 3:18496182 | glycosyl hydrolase family protein 43%3B FUNCTIONS IN: hydrolase activity%2C hydrolyzing O-glycosyl compounds%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase%2C family 43 (InterPro:IPR006710)%3B BEST Arabidopsis thaliana protein match is: Arabinanase/levansucrase/invertase (TAIR:AT5G67540.2)%3B Has 1254 Blast hits to 1248 proteins in 224 species: Archae - 2%3B Bacteria - 1011%3B Metazoa - 1%3B Fungi - 133%3B Plants - 55%3B Viruses - 0%3B Other Eukaryotes - 52 (source: NCBI BLink). | |||
| AT5G51660 | gene | CPSF160 | 0.90 | 5:20980005 | cleavage and polyadenylation specificity factor 160 (CPSF160)%3B FUNCTIONS IN: nucleic acid binding%3B INVOLVED IN: mRNA cleavage%2C mRNA polyadenylation%3B LOCATED IN: nucleus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor%2C A subunit%2C C-terminal (InterPro:IPR004871)%3B BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1A (TAIR:AT4G05420.2)%3B Has 1568 Blast hits to 1022 proteins in 220 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 654%3B Fungi - 429%3B Plants - 267%3B Viruses - 0%3B Other Eukaryotes - 218 (source: NCBI BLink). | ||
| AT2G16350 | gene | None | 0.90 | None:None | None | ||
| AT5G59210 | gene | 0.90 | 5:23890546 | myosin heavy chain-related%3B Has 64840 Blast hits to 37428 proteins in 2371 species: Archae - 766%3B Bacteria - 8706%3B Metazoa - 32710%3B Fungi - 5334%3B Plants - 2996%3B Viruses - 150%3B Other Eukaryotes - 14178 (source: NCBI BLink). | |||
| GO | domain | Definition | P-value |
|---|---|---|---|
| ATP-dependent RNA helicase activity | molecular_function | "Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix." [EC:3.6.1.3, GOC:jl] | 2.00e-03 |
| cytoplasm | cellular_component | "All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures." [ISBN:0198547684] | 2.00e-03 |
| cytosol | cellular_component | "The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes." [GOC:hgd, GOC:jl] | 2.00e-03 |
| protein metabolic process | biological_process | "The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification." [GOC:ma] | 1.01e-02 |
| aminoacyl-tRNA ligase activity | molecular_function | "Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP." [ISBN:0198506732] | 1.30e-02 |
| RNA secondary structure unwinding | biological_process | "The process in which a secondary structure of RNA are broken or 'melted'." [PMID:17169986] | 1.30e-02 |
| cellular protein metabolic process | biological_process | "The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification." [GOC:jl] | 1.40e-02 |
| methionine biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins." [GOC:jl, ISBN:0198506732] | 2.12e-02 |
| RNA splicing, via endonucleolytic cleavage and ligation | biological_process | "Splicing of RNA via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons." [GOC:krc, ISBN:0879695897] | 2.17e-02 |
| nucleic acid binding | molecular_function | "Interacting selectively and non-covalently with any nucleic acid." [GOC:jl] | 2.17e-02 |
| embryo development | biological_process | "The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant." [GOC:go_curators, GOC:isa_complete, GOC:mtg_sensu] | 2.23e-02 |
| DNA-directed DNA polymerase activity | molecular_function | "Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group." [EC:2.7.7.7, GOC:vw, ISBN:0198547684] | 2.75e-02 |
| aminopeptidase activity | molecular_function | "Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain." [GOC:jl, ISBN:0198506732] | 2.75e-02 |
| DNA-dependent DNA replication | biological_process | "A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands." [GOC:mah, ISBN:0198506732] | 2.75e-02 |
| N-terminal protein myristoylation | biological_process | "The covalent attachment of a myristoyl group to the N-terminal amino acid residue of a protein." [GOC:mah] | 2.75e-02 |
| response to cadmium ion | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus." [GOC:ai] | 2.75e-02 |
| damaged DNA binding | molecular_function | "Interacting selectively and non-covalently with damaged DNA." [GOC:jl] | 3.72e-02 |
| nucleobase-containing compound metabolic process | biological_process | "Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids." [GOC:ai] | 3.72e-02 |
| nucleotide-excision repair | biological_process | "A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts)." [PMID:10197977] | 3.72e-02 |
| peptide biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. This may include the translation of a precursor protein and its subsequent processing into a functional peptide." [CHEBI:16670, GOC:dph, GOC:jl] | 3.72e-02 |
| positive regulation of cell cycle | biological_process | "Any process that activates or increases the rate or extent of progression through the cell cycle." [GOC:go_curators] | 3.72e-02 |
| DNA metabolic process | biological_process | "Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides." [ISBN:0198506732] | 3.79e-02 |
| response to metal ion | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus." [GOC:sm] | 3.79e-02 |
| translation | biological_process | "The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome." [GOC:go_curators] | 4.02e-02 |
| mRNA processing | biological_process | "Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide." [GOC:mah] | 4.06e-02 |
| gluconeogenesis | biological_process | "The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol." [MetaCyc:GLUCONEO-PWY] | 4.45e-02 |
| mRNA export from nucleus | biological_process | "The directed movement of mRNA from the nucleus to the cytoplasm." [GOC:ma] | 4.72e-02 |
| nitrogen compound metabolic process | biological_process | "The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium." [CHEBI:51143, GOC:go_curators, GOC:jl, ISBN:0198506732] | 4.72e-02 |
| detection of light stimulus | biological_process | "The series of events in which a light stimulus (in the form of photons) is received and converted into a molecular signal." [GOC:go_curators] | 4.72e-02 |