Show all genes, phenotypes and metabolites for which the QTL profile correlates with that of the query profile above the set cut-off, the query trait is in the first row.
Strongly correlating QTL profiles could indicate common regulation.
encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Sec14p-like phosphatidylinositol transfer family protein%3B CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function%2C C-terminal (InterPro:IPR001251)%2C Cellular retinaldehyde-binding/triple function%2C N-terminal (InterPro:IPR008273)%2C Phosphatidylinositol transfer protein-like%2C N-terminal (InterPro:IPR011074)%3B BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT5G47730.1)%3B Has 2078 Blast hits to 2075 proteins in 218 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 668%3B Fungi - 421%3B Plants - 777%3B Viruses - 0%3B Other Eukaryotes - 212 (source: NCBI BLink).
Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identi%26#64257%3Bed in the Arabidopsis genome: ADT1 [At1g11790]%3B ADT2 [At3g07630]%3B ADT3 [At2g27820]%3B ADT4 [At3g44720]%3B ADT5 [At5g22630]%3B and ADT6 [At1g08250].
A member of ARF GTPase family. A thaliana has 21 members of this family%2C known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division%2C cell expansion and cellulose production using antisense construct.
Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G35500.1)%3B Has 35193 Blast hits to 29796 proteins in 1150 species: Archae - 6%3B Bacteria - 2278%3B Metazoa - 14147%3B Fungi - 6480%3B Plants - 5417%3B Viruses - 63%3B Other Eukaryotes - 6802 (source: NCBI BLink).
Encodes a NOTCHLESS homolog%2C a non-ribosomal protein involved in the maturation and assembly of the 60S ribosomal subunit%2C that is required for female gametogenesis.
Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing.
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC3 co-localizes with Golgi markers%2C and this localization appears to be replicated using the C-terminal (161 aa) portion of the protein.
Encodes a plastid heme oxygenase necessary for phytochrome chromophore biosynthesis and for coupling the expression of some nuclear genes to the functional state of the chloroplast.
Mutant leaves have a reduced capacity for cold acclimation%2C appear water-soaked%2C leak electrolytes%2C and accumulate reactive oxygen species constitutively. Encode a protein with high similarity to the 18-kD Fe-S subunit of complex I (NADH dehydrogenase%2C EC 1.6.5.3) in the mitochondrial electron transfer chain.
Encodes a protein with phytyl ester synthesis and diacylglycerol acyltransferase activities that is involved in the deposition of free phytol and free fatty acids in the form of phytyl esters in chloroplasts%2C a process involved in maintaining the integrity of the photosynthetic membrane during abiotic stress and senescence.
Non-catalytic subunit of Nuclear DNA-dependent RNA polymerase V%3B homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog%2C At2g15430 can substitute for At2g15400 in the context of Pol V and encodes the equivalent subunit of Pol II and Pol IV.
Tic20 is believed to function as a component of the protein-conducting channel at the inner envelope membrane. Genes AT1G04940 and AT1G04945 were switched for the TAIR7 genome release to give consistency with MIPs annotation. The Arabidopsis genome encodes four Tic20 homologous proteins%2C AT1G04940(Tic20-I)%2C AT2G47840(Tic20-II)%2C AT4G03320(Tic20-IV) and AT5G55710(Tic20-V).
myosin heavy chain-related%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14990.1)%3B Has 79454 Blast hits to 45133 proteins in 2455 species: Archae - 1380%3B Bacteria - 12637%3B Metazoa - 37354%3B Fungi - 6686%3B Plants - 3988%3B Viruses - 410%3B Other Eukaryotes - 16999 (source: NCBI BLink).
Encodes a member of the cdc2+ family of protein kinases MHK. Similar to the mak genes of rats. mak encodes a protein kinase that may play a role in spermatogenesis.
Nuclear serine/threonine protein kinase that requires a coiled-coil region for oligomerization and catalytic activity. Required for leaf and flower development. Expression localized to the developing style by stage 13.
Encodes a sugar-porter family protein that is induced during leaf senescence. The increase in its gene expression during leaf senescence is paralleled by an accumulation of monosaccharides.
Encodes a member of the GRAS family of transcription factors. The protein interacts with the TGA2 transcription factor and affects the transcription of stress-responsive genes. The protein is found in the nucleus and is also exported to the cytoplasm.
Protein of unknown function (DUF668)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700)%2C Protein of unknown function DUF3475 (InterPro:IPR021864)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT5G04550.1)%3B Has 431 Blast hits to 290 proteins in 19 species: Archae - 0%3B Bacteria - 1%3B Metazoa - 0%3B Fungi - 0%3B Plants - 424%3B Viruses - 0%3B Other Eukaryotes - 6 (source: NCBI BLink).
Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0%2C C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal %26#946%3B-oxidation steps of jasmonic acid biosynthesis.
Plant protein of unknown function (DUF863)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863%2C plant (InterPro:IPR008581)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1)%3B Has 270 Blast hits to 240 proteins in 21 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 5%3B Fungi - 0%3B Plants - 251%3B Viruses - 0%3B Other Eukaryotes - 12 (source: NCBI BLink).
encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a%2C it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.
Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis. Overexpression of this protein in yeast alters copper and zinc homeostasis.
Encodes a 14-3-3 gene%2C designated GRF1 chi (for general regulatory factor1-G-box factor 14-3-3 homolog isoform chi). The major native forms of 14-3-3s are homo- and hetero-dimers%2C the biological functions of which are to interact physically with specific client proteins and thereby effect a change in the client. As a result%2C 14-3-3s are involved in a vast array of processes such as the response to stress%2C cell-cycle control%2C and apoptosis%2C serving as adapters%2C activators%2C and repressors. There are currently 133 full-length sequences available.
SNARE associated Golgi protein family%3B CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414)%3B BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G09580.1)%3B Has 3415 Blast hits to 3415 proteins in 852 species: Archae - 8%3B Bacteria - 1954%3B Metazoa - 223%3B Fungi - 33%3B Plants - 255%3B Viruses - 0%3B Other Eukaryotes - 942 (source: NCBI BLink).
Encodes molybdenum cofactor sulfurase. Involved in Moco biosynthesis. Involved in the conversion of ABA-aldehyde to ABA%2C the last step of abscisic acid (ABA) biosynthesis. %3Ci%3Esir%3C/i%3E loss-of-function mutants are resistant to sirtinol%2C a modulator of auxin signaling.N terminal domain is similar to bacterial NifS suggesting a common mechanism for sulphur mobilization and transfer. Also involved in protein import into chloroplasts.
Protein kinase superfamily protein%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein amino acid phosphorylation%2C N-terminal protein myristoylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Calcium-dependent protein kinase (InterPro:IPR020642)%2C Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Calcium-dependent protein kinase (CDPK) family protein (TAIR:AT1G49580.1)%3B Has 120241 Blast hits to 118384 proteins in 3609 species: Archae - 140%3B Bacteria - 14458%3B Metazoa - 44881%3B Fungi - 12679%3B Plants - 26503%3B Viruses - 512%3B Other Eukaryotes - 21068 (source: NCBI BLink).
Encodes an arginyl-tRNA:protein transferase (ATE1)%2C a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1%2C At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening%2C seedling sugar sensitivity%2C seedling lipid breakdown%2C and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence.
Aminotransferase-like%2C plant mobile domain family protein%3B CONTAINS InterPro DOMAIN/s: Aminotransferase-like%2C plant mobile domain (InterPro:IPR019557)%3B BEST Arabidopsis thaliana protein match is: Aminotransferase-like%2C plant mobile domain family protein (TAIR:AT1G17930.1)%3B Has 746 Blast hits to 715 proteins in 16 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 746%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Transmembrane CLPTM1 family protein%3B CONTAINS InterPro DOMAIN/s: Cleft lip and palate transmembrane 1 (InterPro:IPR008429)%3B BEST Arabidopsis thaliana protein match is: Transmembrane CLPTM1 family protein (TAIR:AT5G23575.1)%3B Has 489 Blast hits to 489 proteins in 171 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 235%3B Fungi - 77%3B Plants - 58%3B Viruses - 0%3B Other Eukaryotes - 119 (source: NCBI BLink).
RGP5 is a member of the reversably-glycosylated family of proteins. Analyses using tagged RGP5 suggest that it is present in the cytosol and in association with the Golgi apparatus. Recombinant RGP5 does not have UDP-arabinose mutase activity based on an in vitro assay even though the related RGP1%2C RGP2%2C and RGP3 proteins do have activity in the same assay. RGP5 can form complexes with RGP1 and RGP2.
glutathione S-conjugate transporting ATPase (AtMRP1) mRNA. An ABCC-type arsenite-phytochelatin transporter. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.
Protein of unknown function (DUF300)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT4G38360.2)%3B Has 852 Blast hits to 850 proteins in 193 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 289%3B Fungi - 195%3B Plants - 246%3B Viruses - 0%3B Other Eukaryotes - 122 (source: NCBI BLink).
Encodes a member of the type XI myosin protein family that binds F-actin and co-localizes with actin filaments and peroxisomes. Homozygous mutants are reported to have pleiotropic effects in growth and fertility and may also be lethal. This protein is also involved in root hair growth and organelle trafficking. This protein interacts with RabC2a and RabD1 in a GTP-dependent manner.
encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1%2C transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a%2C it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.
Encodes catalytic subunit of serine/threonine protein phosphatase 2A. It can associate with phytochromes A and B in vitro. Mutant plants display an accelerated flowering phenotype.
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1%2C RAP2.9 and RAP2.10.
Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.
Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010%2C Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.
Encodes GSL10%2C a member of the Glucan Synthase-Like (GSL) family believed to be involved in the synthesis of the cell wall component callose. GSL10 is required for male gametophyte development and plant growth. Has a role in entry of microspores into mitosis. GSL10 mutation leads to perturbation of microspore division symmetry%2C irregular callose deposition and failure of generative cell engulfment by the vegetative cell cytoplasm. Also refer to GSL8 (At2g36850).
One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex%2C a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Expressed during germination and post-germinative growth.
Encodes a protein with sucrose synthase activity (SUS3). It appears to be important for sucrose metabolism in developing seeds%2C especially during the late maturation phase%2C about 18 days after flowering.
Encodes a subunit of the dolichol phosphate mannase synthase (DPMS) complex that may serve as membrane anchors for the catalytic core%2C DPMS1%2C or provide catalytic assistance. It is localized in the ER and mediates isoprenyl-linked glycan biogenesis.