Show all genes, phenotypes and metabolites for which the QTL profile correlates with that of the query profile above the set cut-off, the query trait is in the first row.
Strongly correlating QTL profiles could indicate common regulation.
Encodes a mitogen-activated kinase kinase%2C dual specific protein kinase that is expressed in vegetative tissues and floral buds. Involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK4.In plants with both MKK5 and MKK6 levels reduced by RNAi plants%2C floral organs do not abscise suggestion a role for both proteins in mediating floral organ abscission.
Encodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870).
Copper transport protein family%3B BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G52750.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
Encodes an orphan multidrug and toxin extrusion transporter. Essential component of salicylic acid-dependent signaling for disease resistance. Member of the MATE-transporter family. Expression induced by salicylic acid. Mutants are salicylic acid-deficient.
Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1%2C another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding%2C and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling. Required for the ssi2-dependent heightened resistance to GPA.
Encodes a homolog of the protein Cas1p known to be involved in polysaccharide O-acetylation in Cryptococcus neoformans. Has high similarity to RWA2 whose mutant displays reduced acetylation. The protein is expressed in the Golgi and is involved in the acetylation of xylan during secondary wall biosynthesis.
Sec14p-like phosphatidylinositol transfer family protein%3B CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function%2C C-terminal (InterPro:IPR001251)%2C Cellular retinaldehyde-binding/triple function%2C N-terminal (InterPro:IPR008273)%2C Phosphatidylinositol transfer protein-like%2C N-terminal (InterPro:IPR011074)%3B BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G55840.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
Protein of unknown function%2C DUF538%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function%2C DUF538 (TAIR:AT1G09310.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death%2C and induces defense against pathogens by causing increased accumulation of salicylic acid.
Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G09010.1)%3B Has 119178 Blast hits to 117668 proteins in 4361 species: Archae - 113%3B Bacteria - 13232%3B Metazoa - 43958%3B Fungi - 10262%3B Plants - 33662%3B Viruses - 406%3B Other Eukaryotes - 17545 (source: NCBI BLink).
Protein of unknown function (DUF594)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF594) (TAIR:AT5G45540.1)%3B Has 1371 Blast hits to 876 proteins in 12 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1371%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: sperm cell%2C male gametophyte%2C pollen tube%3B EXPRESSED DURING: M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G19110.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
Encodes a protein with NADH pyrophosphatase activity. Although this protein was also shown to have ADP-ribose diphosphatase activity in vitro%2C mutant analyses suggest that NUDX6 is involved in NADH metabolism in vivo.
VICTR (VARIATION IN COMPOUND TRIGGERED ROOT growth response) encodes a TIR-NB-LRR (for Toll-Interleukin1 Receptor-nucleotide binding-Leucine-rich repeat) protein. VICTR is necessary for DFPM-induced root growth arrest and inhibition of abscisic acid-induced stomatal closing (DFPM is [5-(3%2C4-dichlorophenyl)furan-2-yl]-piperidine-1-ylmethanethione)(PMID:21620700). DFPM-mediated root growth arrest is accession-specific and depends on EDS1 and PAD4%3B Col-0 has a functional copy of VICTR. Induction of the VICTR gene by DFPM treatment requires functional VICTR (Col). A close homolog to VICTR%2C named VICTL (At5g46510) lies in tandem with VICTR.
secE/sec61-gamma protein transport protein%3B FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity%3B INVOLVED IN: intracellular protein transport%2C protein transport%2C protein targeting%3B LOCATED IN: membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein translocase SEC61 complex gamma subunit (InterPro:IPR008158)%2C Protein secE/sec61-gamma protein (InterPro:IPR001901)%3B BEST Arabidopsis thaliana protein match is: secE/sec61-gamma protein transport protein (TAIR:AT5G50460.1)%3B Has 578 Blast hits to 578 proteins in 210 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 242%3B Fungi - 133%3B Plants - 109%3B Viruses - 0%3B Other Eukaryotes - 92 (source: NCBI BLink).
encodes a high-affinity ammonium transporter%2C which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation%2C respectively.
Encodes a syntaxin localized at the plasma membrane (SYR1%2C Syntaxin Related Protein 1%2C also known as SYP121%2C PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling%2C vesicle traffic%2C growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid%2C suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew%2C Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance. The syp121 point mutation results in stomatal phenotypes that reduce CO2 assimilation%2C slow vegetative growth and increase water use efficiency in the whole plant%2C conditional upon high light intensities and low relative humidity.
Phytochelatin synthase gene confers tolerance to cadmium ions. Catalyzes phytochelatin (PC) synthesis from glutathione (GSH) in the presence of Cd2+%2C Zn2+%2C Cu2+ and Fe3+%2C but not by Co2+ or Ni2+.
Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Functions in resistance to necrotrophic fungi and insect herbivory. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900%2C At2g38870%2C At5g43570%2C At5g43580%2C At3g50020 and At3g46860.
The gene encodes a MYB transcription factor belons to R2R3-MYB family of transcription factors. Knock-down mutant analysis indicates its role in root hair elongation.
Protein kinase family protein with leucine-rich repeat domain%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein tyrosine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway%2C protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Leucine-rich repeat%2C typical subtype (InterPro:IPR003591)%2C Tyrosine-protein kinase%2C active site (InterPro:IPR008266)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT4G08850.1)%3B Has 304074 Blast hits to 147448 proteins in 4766 species: Archae - 178%3B Bacteria - 29187%3B Metazoa - 106993%3B Fungi - 12531%3B Plants - 120860%3B Viruses - 430%3B Other Eukaryotes - 33895 (source: NCBI BLink).
Uncharacterised protein family (UPF0497)%3B CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497%2C trans-membrane plant (InterPro:IPR006702)%2C Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (InterPro:IPR006459)%3B BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G39518.1)%3B Has 200 Blast hits to 200 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 200%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
SecY protein transport family protein%3B FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity%3B INVOLVED IN: response to salt stress%2C protein secretion%3B LOCATED IN: membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208)%2C Translocon Sec61/SecY%2C plug domain (InterPro:IPR019561)%3B BEST Arabidopsis thaliana protein match is: SecY protein transport family protein (TAIR:AT1G29310.1)%3B Has 4557 Blast hits to 4550 proteins in 2034 species: Archae - 275%3B Bacteria - 3091%3B Metazoa - 262%3B Fungi - 228%3B Plants - 170%3B Viruses - 0%3B Other Eukaryotes - 531 (source: NCBI BLink).
Encodes a mitogen-activated map kinase kinase (there are nine in Arabidopsis) involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK5. In plants with both MKK5 and MKK6 levels reduced by RNAi plants%2C floral organs do not abscise suggestion a role for both proteins in mediating floral organ abscission.
Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%3B BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT5G38210.1)%3B Has 129213 Blast hits to 127053 proteins in 4833 species: Archae - 128%3B Bacteria - 14675%3B Metazoa - 47420%3B Fungi - 11551%3B Plants - 35229%3B Viruses - 624%3B Other Eukaryotes - 19586 (source: NCBI BLink).
Receptor-like protein kinase-related family protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: anchored to plasma membrane%2C anchored to membrane%3B EXPRESSED IN: hypocotyl%2C root%2C callus%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902)%3B BEST Arabidopsis thaliana protein match is: Receptor-like protein kinase-related family protein (TAIR:AT5G41290.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
Confers resistance to Ralstonia solanacearum. Similar to NBLS-TIR resistance genes%2Cand also contains similarity to transcription factors. Interacts with pathogen effector protein AvrPop2.
Encodes a CoA pyrophosphatase%2C also has ppGpp pyrophosphohydrolase and exhibits minor activity of NADH pyrophosphatase. Most strongly expressed in embryo cotyledon and hypocotyl%2C flower%2C and phloem of vascular tissue. Over-expression mutant had a bigger plant with wider rosette.
Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain.
Encodes a plasma-membrane localized%2C copine-like protein%2C which is a member of a newly identified class of calcium-dependent%2C phospholipid binding proteins that are present in a wide range of organisms. Mutants exhibit temperature-sensitive growth defects and increased hypersensitive response where permissive conditions are low temperature (22 degrees Celsius) and low humidity. Gene is expressed at 22 but not at 28 (restrictive condition) degrees. Lethality of double mutants with BON3 can be partially suppressed by SNC1. Double mutants show defects in development that are genetically separable from hypersensitive/cell death response.
Encodes a Class I cytochrome c family member possessing a high structural homology with photosynthetic cytochrome c(6) from cyanobacteria%2C but structurally and functionally distinct through the presence of a disulfide bond.
One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
SecY protein transport family protein%3B FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity%3B INVOLVED IN: protein secretion%2C protein transport%3B LOCATED IN: membrane%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: LP.10 ten leaves visible%2C LP.02 two leaves visible%2C petal differentiation and expansion stage%2C LP.08 eight leaves visible%3B CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208)%2C Translocon Sec61/SecY%2C plug domain (InterPro:IPR019561)%3B BEST Arabidopsis thaliana protein match is: SecY protein transport family protein (TAIR:AT2G34250.2)%3B Has 4820 Blast hits to 4813 proteins in 2037 species: Archae - 276%3B Bacteria - 3174%3B Metazoa - 262%3B Fungi - 229%3B Plants - 171%3B Viruses - 0%3B Other Eukaryotes - 708 (source: NCBI BLink).
BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46260.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).
Protein of unknown function (DUF295)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT5G46130.1)%3B Has 273 Blast hits to 271 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 273%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
S2P-like putative metalloprotease%2C also contain transmembrane helices near their C-termini and many of them%2C five of seven%2C contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs%2C the previously reported NPDG motif (aa 442%E2%80%93454 in EGY1%2C Rudner et al.%2C 1999) and a newly defined GNLR motif (aa 171%E2%80%93179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.
Abscisic acid-responsive (TB2/DP1%2C HVA22) family protein%3B CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345)%3B BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
Encodes a beta-amylase-like protein present in the nucleus rather than targeted to the chloroplast. Contains BRASSINAZOLE RESISTANT1 (BZR1)-type DNA binding domains. Activates gene expression in protoplast transactivation assays.
Encodes a substrate receptor for CRL4-CDD complexes that provides substrate specificity for CRL4 by interacting with ubiquitination targets. By its interaction and regulation of levels of PYL8 through proteasomal degradation%2C it negatively regulates ABA-mediated developmental responses%2C including inhibition of seed germination%2C seedling establishment%2C and root growth
Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO)%2C the condensation product of glutathione and NO%2C that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility.
Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN2 acts as a suppressor of posttranscriptional gene silencing.
Encodes a nitrate efflux transporter NAXT1 (for NITRATE EXCRETION TRANSPORTER1). Localized to the plasma membrane. NAXT1 belongs to a subclass of seven NAXT members from the large NITRATE TRANSPORTER1/PEPTIDE TRANSPORTER family and is mainly expressed in the cortex of mature roots.
Domain of unknown function (DUF220)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863)%3B BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1)%3B Has 145 Blast hits to 132 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 145%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis.
Encodes a class II HD-ZIP protein that regulates meristematic activity in different tissues%2C and that it is necessary for the correct formation of the gynoecium.
Heavy metal transport/detoxification superfamily protein %3B FUNCTIONS IN: metal ion binding%3B INVOLVED IN: metal ion transport%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121)%3B BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT2G36950.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).
Heavy metal transport/detoxification superfamily protein %3B FUNCTIONS IN: metal ion binding%3B INVOLVED IN: metal ion transport%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121)%3B BEST Arabidopsis thaliana protein match is: farnesylated protein 3 (TAIR:AT5G63530.1)%3B Has 3627 Blast hits to 2265 proteins in 257 species: Archae - 2%3B Bacteria - 226%3B Metazoa - 530%3B Fungi - 59%3B Plants - 2104%3B Viruses - 3%3B Other Eukaryotes - 703 (source: NCBI BLink).
Protein kinase superfamily protein%3B CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G11390.1)%3B Has 9331 Blast hits to 9278 proteins in 1808 species: Archae - 122%3B Bacteria - 4378%3B Metazoa - 406%3B Fungi - 512%3B Plants - 679%3B Viruses - 16%3B Other Eukaryotes - 3218 (source: NCBI BLink).
Zinc finger C-x8-C-x5-C-x3-H type family protein%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%3B BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT1G03790.1)%3B Has 1182 Blast hits to 968 proteins in 143 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 415%3B Fungi - 15%3B Plants - 396%3B Viruses - 3%3B Other Eukaryotes - 353 (source: NCBI BLink).
Member of CYP714A. Encodes one of the two tandemly duplicated gene pair ELA1 (CYP714A1) and ELA2 (CYP714A2)%2C homologs of the rice cytochrome P450 monooxygenase gene EUI1. Double mutation of ELA1 and ELA2 results in increased biomass and enlarged organs.
Encodes a chloroplast envelope-bound plant homeodomain (PHD) transcription factor with transmembrane domains that functions in multiple retrograde signal pathways. The proteolytic cleavage of PTM occurs in response to retrograde signals and amino-terminal PTM accumulates in the nucleus%2C where it activates ABI4 transcription in a PHD-dependent manner associated with histone modifications.
Encodes NPR3%2C a paralog of NPR1. Involved in negative regulation of defense responses against bacterial and oomycete pathogens. npr3 mutants has elevated level of PR1 expression. Interacts with TGA2%2C TGA3%2C TGA5 and TGA6 in yeast two hybrid assays. NPR3 and NPR4 are receptors for the immune signal salicylic acid.
Domain of unknown function (DUF23)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166)%3B BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT4G20170.1)%3B Has 204 Blast hits to 204 proteins in 35 species: Archae - 0%3B Bacteria - 27%3B Metazoa - 39%3B Fungi - 0%3B Plants - 129%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink).
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1%2C ATERF-2%2C AND ATERF-5.
A member of ARF GTPase family. A thaliana has 21 members of this family%2C known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1%3B ARF 1 (GP:385340) %7BDrosophila melanogaster)%2C other ARFs and ARF-like proteins.
one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain.
encodes a protein with extensive homology to the largest subunit of the multicatalytic proteinase complex (proteasome). Negatively regulates thiol biosynthesis and arsenic tolerance.
Encodes a protein with ureidoglycolate amidohydrolase activity in vitro. It is 27%25 identical and 43%25 similar to the E. coli allantoate amidohydrolase (AAH)%2C but%2C in vitro assays with purified protein and allantoate as a substrate do not show any increase in ammonium concentration%2C indicating that there this enzyme has no AAH activity.
Plant protein of unknown function (DUF247)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247%2C plant (InterPro:IPR004158)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT2G28580.1)%3B Has 1401 Blast hits to 907 proteins in 17 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1401%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink).
GO
domain
Definition
P-value
salicylic acid biosynthetic process
biological_process
"The chemical reactions and pathways resulting in the formation of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid." [ISBN:0943088399]
1.50e-17
defense response
biological_process
"Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack." [GOC:go_curators]
3.41e-15
negative regulation of defense response
biological_process
"Any process that stops, prevents, or reduces the frequency, rate or extent of a defense response." [GOC:mah]
4.51e-13
systemic acquired resistance
biological_process
"The salicylic acid mediated response to a pathogen which confers broad spectrum resistance." [GOC:lr, ISBN:052143641]
6.45e-12
defense response to bacterium
biological_process
"Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism." [GOC:jl]
1.33e-10
salicylic acid mediated signaling pathway
biological_process
"A series of molecular signals mediated by salicylic acid." [GOC:jy]
3.80e-09
innate immune response
biological_process
"Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens." [GO_REF:0000022, GOC:add, GOC:ebc, GOC:mtg_15nov05, GOC:mtg_sensu]
3.80e-09
detection of biotic stimulus
biological_process
"The series of events in which a biotic stimulus, one caused or produced by a living organism, is received and converted into a molecular signal." [GOC:hb]
5.77e-09
defense response to fungus
biological_process
"Reactions triggered in response to the presence of a fungus that act to protect the cell or organism." [GOC:ai]
3.14e-08
response to external biotic stimulus
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external biotic stimulus, an external stimulus caused by, or produced by living things." [GOC:go_curators]
3.23e-08
response to other organism
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism." [GOC:ai]
3.27e-08
MAPK cascade
biological_process
"An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell." [GOC:bf, GOC:mtg_signaling_feb11, PMID:20811974, PMID:9561267]
6.86e-08
response to biotic stimulus
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism." [GOC:hb]
6.86e-08
defense response to other organism
biological_process
"Reactions triggered in response to the presence of another organism that act to protect the cell or organism from damage caused by that organism." [GOC:dos]
"The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance." [GOC:jy]
7.42e-08
response to stress
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation)." [GOC:mah]
3.10e-07
response to bacterium
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium." [GOC:hb]
5.27e-07
regulation of hydrogen peroxide metabolic process
biological_process
"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide." [PMID:14765119]
1.16e-06
regulation of innate immune response
biological_process
"Any process that modulates the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection." [GOC:ebc]
1.93e-06
defense response, incompatible interaction
biological_process
"A response of a plant to a pathogenic agent that prevents the occurrence or spread of disease." [GOC:lr]
2.26e-06
plant-type hypersensitive response
biological_process
"The rapid, localized death of plant cells in response to invasion by a pathogen." [ISBN:0582227089]
4.80e-06
response to stimulus
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." [GOC:ai, GOC:bf]
6.48e-06
response to molecule of bacterial origin
biological_process
"Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin." [GOC:rl, GOC:sm]
9.67e-06
signal transduction
biological_process
"The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell." [GOC:go_curators, GOC:mtg_signaling_feb11]
1.22e-05
regulation of defense response
biological_process
"Any process that modulates the frequency, rate or extent of a defense response." [GOC:mah]
1.25e-05
immune response
biological_process
"Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat." [GO_REF:0000022, GOC:add, GOC:mtg_15nov05]
1.25e-05
cellular response to salicylic acid stimulus
biological_process
"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus." [GOC:mah]
1.40e-05
regulation of plant-type hypersensitive response
biological_process
"Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response." [PMID:16255244]
1.90e-05
cell death
biological_process
"Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as "apoptotic bodies"); and/or (3) its corpse (or its fragments) have been engulfed by an adjacent cell in vivo." [GOC:mah, GOC:mtg_apoptosis]
2.10e-05
host programmed cell death induced by symbiont
biological_process
"Cell death in a host resulting from activation of host endogenous cellular processes after direct or indirect interaction with a symbiont (defined as the smaller of two, or more, organisms engaged in symbiosis, a close interaction encompassing mutualism through parasitism). An example of direct interaction is contact with penetrating hyphae of a fungus; an example of indirect interaction is encountering symbiont-secreted molecules." [GOC:pamgo_curators]
2.43e-05
response to salicylic acid
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus." [GOC:jl]
2.52e-05
signaling
biological_process
"The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered." [GOC:mtg_signal, GOC:mtg_signaling_feb11, GOC:signaling]
2.56e-05
immune system process
biological_process
"Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats." [GO_REF:0000022, GOC:add, GOC:mtg_15nov05]
2.73e-05
ADP binding
molecular_function
"Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate." [GOC:jl]
3.07e-05
response to chitin
biological_process
"A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus." [GOC:sm]
3.81e-05
regulation of cell death
biological_process
"Any process that modulates the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death." [GOC:dph, GOC:tb]
5.46e-05
cell communication
biological_process
"Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." [GOC:mah]
5.55e-05
protein targeting to membrane
biological_process
"The process of directing proteins towards a membrane, usually using signals contained within the protein." [GOC:curators]
8.99e-05
negative regulation of programmed cell death
biological_process
"Any process that stops, prevents, or reduces the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes." [GOC:jl]
9.09e-05
programmed cell death
biological_process
"A process which begins when a cell receives an internal or external signal and activates a series of biochemical events (signaling pathway). The process ends with the death of the cell." [GOC:lr, GOC:mtg_apoptosis]
1.09e-04
regulation of response to stress
biological_process
"Any process that modulates the frequency, rate or extent of a response to stress. Response to stress is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation)." [GOC:dhl]
1.44e-04
jasmonic acid mediated signaling pathway
biological_process
"A series of molecular signals mediated by jasmonic acid." [GOC:jy, PMID:16478936, PMID:19522558, PMID:20159850]
1.56e-04
ATP binding
molecular_function
"Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator." [ISBN:0198506732]
3.04e-04
cellular response to stimulus
biological_process
"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell." [GOC:bf, GOC:jl]
3.89e-04
detection of external stimulus
biological_process
"The series of events in which an external stimulus is received by a cell and converted into a molecular signal." [GOC:hb]
1.29e-03
protein kinase activity
molecular_function
"Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP." [MetaCyc:PROTEIN-KINASE-RXN]
3.50e-03
lipase activity
molecular_function
"Catalysis of the hydrolysis of a lipid or phospholipid." [GOC:mah]
4.44e-03
positive regulation of signal transduction
biological_process
"Any process that activates or increases the frequency, rate or extent of signal transduction." [GOC:sm]
6.65e-03
response to insect
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from an insect." [GOC:hb]
7.05e-03
positive regulation of cell communication
biological_process
"Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." [GOC:dph, GOC:tb]
8.67e-03
floral organ abscission
biological_process
"The controlled shedding of floral organs." [GOC:PO_curators, PMID:12972671, PO:0025395]
8.70e-03
regulation of multi-organism process
biological_process
"Any process that modulates the frequency, rate or extent of a multi-organism process, a process in which an organism has an effect on another organism of the same or different species." [GOC:jl]
8.91e-03
phosphorylation
biological_process
"The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide." [ISBN:0198506732]
9.27e-03
inflorescence development
biological_process
"The process whose specific outcome is the progression of an inflorescence over time, from its formation to the mature structure." [GOC:tb]
9.34e-03
transferase activity, transferring phosphorus-containing groups
molecular_function
"Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor)." [GOC:jl, ISBN:0198506732]
1.05e-02
protein phosphorylation
biological_process
"The process of introducing a phosphate group on to a protein." [GOC:hb]
1.10e-02
abscission
biological_process
"The controlled shedding of a body part." [ISBN:0140514031]
1.21e-02
positive regulation of cellular process
biological_process
"Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:jid]
1.21e-02
negative regulation of cell death
biological_process
"Any process that decreases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death." [GOC:BHF, GOC:dph, GOC:tb]
1.21e-02
positive regulation of defense response
biological_process
"Any process that activates or increases the frequency, rate or extent of a defense response." [GOC:mah]
1.67e-02
ethylene biosynthetic process
biological_process
"The chemical reactions and pathways resulting in the formation of ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator." [ISBN:0387969845]
1.84e-02
response to fungus
biological_process
"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus." [GOC:hb]
1.98e-02
regulation of programmed cell death
biological_process
"Any process that modulates the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes." [GOC:jl]
1.98e-02
salicylic acid metabolic process
biological_process
"The chemical reactions and pathways involving of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid." [ISBN:0943088399]
2.20e-02
defense response to bacterium, incompatible interaction
biological_process
"A response of an organism to a bacterium that prevents the occurrence or spread of disease." [GOC:lr]
2.77e-02
regulation of apoptotic process
biological_process
"Any process that modulates the occurrence or rate of cell death by apoptotic process." [GOC:jl, GOC:mtg_apoptosis]
3.41e-02
aromatic compound catabolic process
biological_process
"The chemical reactions and pathways resulting in the breakdown of aromatic compounds, any substance containing an aromatic carbon ring." [GOC:ai]
3.45e-02
endoplasmic reticulum unfolded protein response
biological_process
"The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation." [GOC:mah, PMID:12042763]
3.45e-02
regulation of signal transduction
biological_process
"Any process that modulates the frequency, rate or extent of signal transduction." [GOC:sm]
3.94e-02
protein autophosphorylation
biological_process
"The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation)." [ISBN:0198506732]