| Trait ID (count=40) | Type | Name | Pearson's Correlation Coefficient | Position | Description | ||
|---|---|---|---|---|---|---|---|
| AT4G04510 | gene | CRK38 | 1.00 | 4:2242072 | Encodes a cysteine-rich receptor-like protein kinase. | ||
| AT5G44990 | gene | 0.98 | 5:18163128 | Glutathione S-transferase family protein%3B CONTAINS InterPro DOMAIN/s: Glutathione S-transferase%2C predicted (InterPro:IPR016639)%2C Glutathione S-transferase%2C C-terminal-like (InterPro:IPR010987)%2C Glutathione S-transferase/chloride channel%2C C-terminal (InterPro:IPR017933)%2C Thioredoxin-like fold (InterPro:IPR012336)%3B BEST Arabidopsis thaliana protein match is: Glutathione S-transferase family protein (TAIR:AT4G19880.1)%3B Has 2474 Blast hits to 2474 proteins in 819 species: Archae - 30%3B Bacteria - 1545%3B Metazoa - 25%3B Fungi - 237%3B Plants - 128%3B Viruses - 0%3B Other Eukaryotes - 509 (source: NCBI BLink). | |||
| AT2G14610 | gene | PR1 | 0.97 | 2:6241640 | PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called 'PR-1-like'%2C the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive. | ||
| AT2G39210 | gene | 0.97 | 2:16366102 | Major facilitator superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: transmembrane transport%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658)%2C Major facilitator superfamily MFS-1 (InterPro:IPR011701)%2C Major facilitator superfamily%2C general substrate transporter (InterPro:IPR016196)%3B BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G28120.1)%3B Has 3072 Blast hits to 2927 proteins in 685 species: Archae - 32%3B Bacteria - 1223%3B Metazoa - 36%3B Fungi - 288%3B Plants - 601%3B Viruses - 0%3B Other Eukaryotes - 892 (source: NCBI BLink). | |||
| AT1G15790 | gene | 0.96 | 1:5438171 | unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1)%3B Has 170 Blast hits to 94 proteins in 14 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 170%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). | |||
| AT5G47070 | gene | 0.96 | 5:19118465 | Protein kinase superfamily protein%3B FUNCTIONS IN: protein serine/threonine kinase activity%2C protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C ATP binding site (InterPro:IPR017441)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C Serine/threonine-protein kinase%2C active site (InterPro:IPR008271)%3B BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G17660.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | |||
| AT3G28480 | gene | 0.96 | 3:10675986 | Oxoglutarate/iron-dependent oxygenase%3B FUNCTIONS IN: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors%2C oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C L-ascorbic acid binding%2C iron ion binding%3B INVOLVED IN: oxidation reduction%2C peptidyl-proline hydroxylation to 4-hydroxy-L-proline%3B LOCATED IN: Golgi apparatus%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase%2C alpha subunit (InterPro:IPR006620)%2C Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123)%2C Metridin-like ShK toxin (InterPro:IPR003582)%3B BEST Arabidopsis thaliana protein match is: Oxoglutarate/iron-dependent oxygenase (TAIR:AT3G28490.1)%3B Has 2540 Blast hits to 2497 proteins in 339 species: Archae - 0%3B Bacteria - 391%3B Metazoa - 1089%3B Fungi - 70%3B Plants - 415%3B Viruses - 17%3B Other Eukaryotes - 558 (source: NCBI BLink). | |||
| AT1G16420 | gene | MC8 | 0.95 | 1:5612150 | Encodes a metacaspase (cysteine-type endopeptidase) that is involved in promoting programmed cell death in response to hydrogen peroxide (H2O2)%2C UV light%2C and methyl viologen (MV). Transcript levels rise in response to UV-C%2C H2O2%2C and MV. In vitro assays demonstrate that this enzyme has a preference for cleaving after an arginine residue%2C and it has a pH optimum of 8.0. | ||
| AT1G51790 | gene | 0.94 | 1:19206615 | Leucine-rich repeat protein kinase family protein%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine/threonine-protein kinase domain (InterPro:IPR002290)%2C Leucine-rich repeat (InterPro:IPR001611)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Tyrosine-protein kinase%2C catalytic domain (InterPro:IPR020635)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G51800.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). | |||
| AT2G23680 | gene | 0.94 | 2:10066117 | Cold acclimation protein WCOR413 family%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to stress%3B LOCATED IN: membrane%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%2C 4 anthesis%2C LP.10 ten leaves visible%2C LP.08 eight leaves visible%3B CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892)%3B BEST Arabidopsis thaliana protein match is: Cold acclimation protein WCOR413 family (TAIR:AT4G37220.1)%3B Has 150 Blast hits to 147 proteins in 29 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 150%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). | |||
| AT1G18570 | gene | MYB51 | 0.94 | 1:6389399 | Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis. | ||
| AT1G21900 | gene | p24delta5 | 0.94 | 1:7690802 | Encodes an ER-localized p24 protein. Interacts with p24beta2 at ER export sites for ER exit and coupled transport to the Golgi apparatus. Once in the Golgi%2C p24delta5 interacts very efficiently with the COPI machinery for retrograde transport back to the ER. | ||
| AT5G27830 | gene | 0.94 | 5:9861176 | FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: response to oxidative stress%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Folate receptor%2C conserved region (InterPro:IPR018143)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | |||
| AT4G02380 | gene | SAG21 | 0.94 | 4:1046042 | Encodes AtLEA5 (late embryogenesis abundant like protein). Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21). Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses. | ||
| AT5G40780 | gene | LHT1 | 0.93 | 5:16323567 | Encodes LHT1 (lysine histidine transporter)%2C a high-affinity transporter for cellular amino acid uptake in both root epidermis and leaf mesophyll. | ||
| AT3G29240 | gene | 0.93 | 3:11191263 | Protein of unknown function (DUF179)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast thylakoid lumen%2C chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF179) (TAIR:AT1G33780.1)%3B Has 1065 Blast hits to 1065 proteins in 382 species: Archae - 0%3B Bacteria - 730%3B Metazoa - 0%3B Fungi - 0%3B Plants - 124%3B Viruses - 0%3B Other Eukaryotes - 211 (source: NCBI BLink). | |||
| AT4G26120 | gene | 0.92 | 4:13236253 | Ankyrin repeat family protein / BTB/POZ domain-containing protein%3B CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069)%2C NPR1/NIM1 like%2C C-terminal (InterPro:IPR021094)%2C BTB/POZ fold (InterPro:IPR011333)%2C Ankyrin repeat-containing domain (InterPro:IPR020683)%2C BTB/POZ-like (InterPro:IPR000210)%2C Ankyrin repeat (InterPro:IPR002110)%3B BEST Arabidopsis thaliana protein match is: regulatory protein (NPR1) (TAIR:AT1G64280.1)%3B Has 2068 Blast hits to 1653 proteins in 155 species: Archae - 0%3B Bacteria - 76%3B Metazoa - 627%3B Fungi - 31%3B Plants - 645%3B Viruses - 9%3B Other Eukaryotes - 680 (source: NCBI BLink). | |||
| AT1G70170 | gene | MMP | 0.92 | 1:26423874 | mutant has Late flowering%3B Early senescence%3B Matrix Metalloproteinase | ||
| AT5G19930 | gene | 0.92 | 5:6737512 | Protein of unknown function DUF92%2C transmembrane%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92%2C transmembrane (InterPro:IPR002794)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). | |||
| AT3G11080 | gene | RLP35 | 0.92 | 3:3470304 | receptor like protein 35 (RLP35)%3B FUNCTIONS IN: kinase activity%3B INVOLVED IN: signal transduction%2C defense response%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: stem%2C stamen%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain%2C type 2 (InterPro:IPR013210)%2C Leucine-rich repeat (InterPro:IPR001611)%3B BEST Arabidopsis thaliana protein match is: receptor like protein 34 (TAIR:AT3G11010.1)%3B Has 143109 Blast hits to 35332 proteins in 1251 species: Archae - 53%3B Bacteria - 12845%3B Metazoa - 35908%3B Fungi - 1531%3B Plants - 81557%3B Viruses - 21%3B Other Eukaryotes - 11194 (source: NCBI BLink). | ||
| AT1G23850 | gene | 0.92 | 1:8425724 | unknown protein%3B BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23840.1)%3B Has 47 Blast hits to 40 proteins in 5 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 47%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). | |||
| AT1G17610 | gene | 0.92 | 1:6054922 | Mutant accumulates steryl-esters at low temperature. | |||
| AT5G53330 | gene | 0.91 | 5:21639216 | Ubiquitin-associated/translation elongation factor EF1B protein%3B CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (InterPro:IPR015940)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). | |||
| AT1G32120 | gene | 0.91 | 1:11552426 | FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: membrane%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Aminotransferase-like%2C plant mobile domain (InterPro:IPR019557)%2C Protein of unknown function DUF716 (InterPro:IPR006904)%3B BEST Arabidopsis thaliana protein match is: Aminotransferase-like%2C plant mobile domain family protein (TAIR:AT1G51538.1)%3B Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4%3B Bacteria - 1182%3B Metazoa - 7098%3B Fungi - 2631%3B Plants - 1178%3B Viruses - 174%3B Other Eukaryotes - 4469 (source: NCBI BLink). | |||
| AT3G07370 | gene | CHIP | 0.91 | 3:2357907 | Encodes AtCHIP%2C a new class of E3 ubiquitin ligases with three tetratricopeptide repeats and a U-box domain%2C structurally similar to the animal CHIP proteins. Plays an important role in plant cellular metabolism under temperature stress conditions. Functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment. Belongs to one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010%2C Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones. | ||
| AT5G22380 | gene | NAC090 | 0.91 | 5:7408759 | NAC domain containing protein 90 (NAC090)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: multicellular organismal development%2C regulation of transcription%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441)%3B BEST Arabidopsis thaliana protein match is: NAC domain containing protein 61 (TAIR:AT3G44350.2)%3B Has 2731 Blast hits to 2726 proteins in 73 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2731%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). | ||
| AT3G09020 | gene | 0.91 | 3:2753307 | alpha 1%2C4-glycosyltransferase family protein%3B FUNCTIONS IN: transferase activity%2C transferring glycosyl groups%2C transferase activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: Golgi stack%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Alpha 1%2C4-glycosyltransferase conserved region (InterPro:IPR007652)%2C Glycosyltransferase%2C DXD sugar-binding region (InterPro:IPR007577)%3B BEST Arabidopsis thaliana protein match is: alpha 1%2C4-glycosyltransferase family protein (TAIR:AT5G01250.1)%3B Has 364 Blast hits to 360 proteins in 67 species: Archae - 2%3B Bacteria - 16%3B Metazoa - 234%3B Fungi - 0%3B Plants - 87%3B Viruses - 0%3B Other Eukaryotes - 25 (source: NCBI BLink). | |||
| AT2G02930 | gene | GSTF3 | 0.91 | 2:851156 | Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). | ||
| AT1G42990 | gene | BZIP60 | 0.91 | 1:16135723 | bZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. bZIP60 mRNA is upregulated by the addition of ER stress inducers%2C tunicamycin (inhibitor of N-linked glycosylation)%2C DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). Upon ER stress%2C bZIP60 mRNA is spliced by IRE1A and IRE1B to produce bZIP60-S%2C an active transcription factor without the transmembrane domain. bZIP60-U%2C a product of unspliced form of bZIP60 mRNA%2C is localized at the ER membrane and bZIP60-S is localized in the nucleus. | ||
| AT4G28270 | gene | RMA2 | 0.91 | 4:14007475 | Encodes a RING finger E3 ubiquitin ligase. Binds and ubiquitinates ABP1 in vivo and in vitro. | ||
| AT2G30750 | gene | CYP71A12 | 0.91 | 2:13099486 | putative cytochrome P450 | ||
| AT1G48320 | gene | DHNAT1 | 0.91 | 1:17854813 | Encodes one of the two functional DHNA-CoA (1%2C4-dihydroxy-2-naphthoyl-CoA) thioesterases found in Arabidopsis. | ||
| AT2G40270 | gene | 0.91 | 2:16821934 | Protein kinase family protein%3B FUNCTIONS IN: protein kinase activity%2C kinase activity%2C ATP binding%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245)%2C Protein kinase-like domain (InterPro:IPR011009)%3B BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT3G56050.2)%3B Has 40621 Blast hits to 40281 proteins in 1597 species: Archae - 8%3B Bacteria - 2197%3B Metazoa - 11172%3B Fungi - 1041%3B Plants - 22757%3B Viruses - 129%3B Other Eukaryotes - 3317 (source: NCBI BLink). | |||
| AT3G62780 | gene | 0.90 | 3:23221719 | Calcium-dependent lipid-binding (CaLB domain) family protein%3B CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029)%2C C2 calcium/lipid-binding domain%2C CaLB (InterPro:IPR008973)%2C C2 calcium-dependent membrane targeting (InterPro:IPR000008)%3B BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G16510.1)%3B Has 675 Blast hits to 575 proteins in 98 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 206%3B Fungi - 19%3B Plants - 326%3B Viruses - 29%3B Other Eukaryotes - 85 (source: NCBI BLink). | |||
| AT3G07870 | gene | 0.90 | 3:2510570 | F-box and associated interaction domains-containing protein%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C F-box associated domain%2C type 3 (InterPro:IPR013187)%2C F-box associated interaction domain (InterPro:IPR017451)%3B BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G23880.1)%3B Has 2008 Blast hits to 1989 proteins in 53 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 2006%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink). | |||
| AT2G34940 | gene | VSR5 | 0.90 | 2:14740348 | VACUOLAR SORTING RECEPTOR 5 (VSR5)%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: protein targeting to vacuole%3B LOCATED IN: integral to plasma membrane%2C Golgi transport complex%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137)%2C EGF-like calcium-binding%2C conserved site (InterPro:IPR018097)%2C EGF-like calcium-binding (InterPro:IPR001881)%2C Growth factor%2C receptor (InterPro:IPR009030)%3B BEST Arabidopsis thaliana protein match is: VACUOLAR SORTING RECEPTOR 6 (TAIR:AT1G30900.1)%3B Has 10681 Blast hits to 5483 proteins in 264 species: Archae - 0%3B Bacteria - 175%3B Metazoa - 9320%3B Fungi - 5%3B Plants - 378%3B Viruses - 0%3B Other Eukaryotes - 803 (source: NCBI BLink). | ||
| AT3G53780 | gene | RBL4 | 0.90 | 3:19924538 | RHOMBOID-like protein 4 (RBL4)%3B FUNCTIONS IN: serine-type endopeptidase activity%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Peptidase S54%2C rhomboid (InterPro:IPR002610)%3B BEST Arabidopsis thaliana protein match is: RHOMBOID-like 1 (TAIR:AT2G29050.1)%3B Has 6501 Blast hits to 6500 proteins in 1879 species: Archae - 139%3B Bacteria - 4229%3B Metazoa - 522%3B Fungi - 151%3B Plants - 328%3B Viruses - 0%3B Other Eukaryotes - 1132 (source: NCBI BLink). | ||
| AT5G50200 | gene | WR3 | 0.90 | 5:20436180 | Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction. | ||
| AT2G02810 | gene | UTR1 | 0.90 | 2:801527 | Encodes a multitransmembrane hydrophobic protein that functions as transporter of UDP-galactose and UDP-glucose into the Golgi. Localized in the ER. Involved in the unfolded protein response%2C a mechanism that controls proper protein folding in the ER. | ||
| AT2G02960 | gene | 0.90 | 2:862029 | RING/FYVE/PHD zinc finger superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C Zinc finger%2C RING-CH-type (InterPro:IPR011016)%3B BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G14260.2)%3B Has 1768 Blast hits to 1768 proteins in 205 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 759%3B Fungi - 135%3B Plants - 605%3B Viruses - 31%3B Other Eukaryotes - 238 (source: NCBI BLink). | |||
| GO | domain | Definition | P-value |
|---|---|---|---|
| response to stress | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation)." [GOC:mah] | 1.94e-03 |
| systemic acquired resistance, salicylic acid mediated signaling pathway | biological_process | "The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance." [GOC:jy] | 1.94e-03 |
| defense response to fungus | biological_process | "Reactions triggered in response to the presence of a fungus that act to protect the cell or organism." [GOC:ai] | 1.94e-03 |
| MAPK cascade | biological_process | "An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell." [GOC:bf, GOC:mtg_signaling_feb11, PMID:20811974, PMID:9561267] | 3.56e-03 |
| response to chitin | biological_process | "A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus." [GOC:sm] | 3.56e-03 |
| negative regulation of defense response | biological_process | "Any process that stops, prevents, or reduces the frequency, rate or extent of a defense response." [GOC:mah] | 3.56e-03 |
| regulation of hydrogen peroxide metabolic process | biological_process | "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide." [PMID:14765119] | 8.55e-03 |
| defense response to bacterium | biological_process | "Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism." [GOC:jl] | 1.08e-02 |
| salicylic acid biosynthetic process | biological_process | "The chemical reactions and pathways resulting in the formation of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid." [ISBN:0943088399] | 1.19e-02 |
| endoplasmic reticulum unfolded protein response | biological_process | "The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation." [GOC:mah, PMID:12042763] | 1.24e-02 |
| defense response to other organism | biological_process | "Reactions triggered in response to the presence of another organism that act to protect the cell or organism from damage caused by that organism." [GOC:dos] | 1.83e-02 |
| amino acid transport | biological_process | "The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] | 1.87e-02 |
| defense response | biological_process | "Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack." [GOC:go_curators] | 1.87e-02 |
| induced systemic resistance | biological_process | "A response to non-pathogenic bacteria that confers broad spectrum systemic resistance to disease that does not depend upon salicylic acid signaling." [PMID:10234273] | 1.87e-02 |
| response to endoplasmic reticulum stress | biological_process | "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stress acting at the endoplasmic reticulum. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen." [GOC:cjm, GOC:mah] | 1.87e-02 |
| amino acid import | biological_process | "The directed movement of amino acids into a cell or organelle." [GOC:jl] | 1.87e-02 |
| plasmodesma | cellular_component | "A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell." [ISBN:0198506732] | 2.30e-02 |
| detection of biotic stimulus | biological_process | "The series of events in which a biotic stimulus, one caused or produced by a living organism, is received and converted into a molecular signal." [GOC:hb] | 2.30e-02 |
| jasmonic acid mediated signaling pathway | biological_process | "A series of molecular signals mediated by jasmonic acid." [GOC:jy, PMID:16478936, PMID:19522558, PMID:20159850] | 2.51e-02 |
| regulation of plant-type hypersensitive response | biological_process | "Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response." [PMID:16255244] | 2.51e-02 |
| response to stimulus | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." [GOC:ai, GOC:bf] | 2.51e-02 |
| respiratory burst involved in defense response | biological_process | "A phase of elevated metabolic activity, during which oxygen consumption increases made as part of a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals." [GOC:add, ISBN:0781735149, PMID:12789499] | 2.79e-02 |
| endoplasmic reticulum membrane | cellular_component | "The lipid bilayer surrounding the endoplasmic reticulum." [GOC:mah] | 2.79e-02 |
| response to organonitrogen compound | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organonitrogen stimulus. An organonitrogen compound is formally a compound containing at least one carbon-nitrogen bond." [CHEBI:35352, PMID:9869419] | 2.79e-02 |
| immune system process | biological_process | "Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats." [GO_REF:0000022, GOC:add, GOC:mtg_15nov05] | 3.08e-02 |
| protein targeting to membrane | biological_process | "The process of directing proteins towards a membrane, usually using signals contained within the protein." [GOC:curators] | 3.15e-02 |
| integral component of membrane | cellular_component | "The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane." [GOC:dos, GOC:go_curators] | 3.15e-02 |
| response to external biotic stimulus | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external biotic stimulus, an external stimulus caused by, or produced by living things." [GOC:go_curators] | 3.15e-02 |
| response to other organism | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism." [GOC:ai] | 3.15e-02 |
| response to biotic stimulus | biological_process | "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism." [GOC:hb] | 3.53e-02 |